RNA–Protein interactions for RNA: ENST00000590215.1

MBD1-223, Transcript of methyl-CpG binding domain protein 1, human

TSL 5

Gene MBD1, Length 749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-223	ENST00000590215	ITGAE	P38570	1179 aa		28.52	■■■□□ 2.16
MBD1-223	ENST00000590215	RNF17	Q9BXT8	1623 aa	Known RBP	28.51	■■■□□ 2.15
MBD1-223	ENST00000590215	ESF1	Q9H501	851 aa	Known RBP	28.5	■■■□□ 2.15
MBD1-223	ENST00000590215	FAM135A	Q9P2D6	1515 aa		28.49	■■■□□ 2.15
MBD1-223	ENST00000590215	ANKRD50	Q9ULJ7	1429 aa		28.47	■■■□□ 2.15
MBD1-223	ENST00000590215	MROH1	Q8NDA8	1641 aa		28.45	■■■□□ 2.14
MBD1-223	ENST00000590215	MROH2A	A6NES4	1674 aa		28.44	■■■□□ 2.14
MBD1-223	ENST00000590215	ZMYM3	Q14202	1370 aa		28.43	■■■□□ 2.14
MBD1-223	ENST00000590215	KDM5D	Q9BY66	1539 aa		28.42	■■■□□ 2.14
MBD1-223	ENST00000590215	PRDM15	P57071	1507 aa	Predicted RBP	28.41	■■■□□ 2.14
MBD1-223	ENST00000590215	DEPDC5	O75140	1603 aa		28.4	■■■□□ 2.14
MBD1-223	ENST00000590215	CLTC	Q00610	1675 aa	Known RBP	28.4	■■■□□ 2.14
MBD1-223	ENST00000590215	CEBPA	P49715	358 aa	Predicted RBP	28.4	■■■□□ 2.14
MBD1-223	ENST00000590215	WASHC2C	Q9Y4E1	1318 aa		28.4	■■■□□ 2.14
MBD1-223	ENST00000590215	C3	P01024	1663 aa		28.38	■■■□□ 2.13
MBD1-223	ENST00000590215	ABCC3	O15438	1527 aa		28.36	■■■□□ 2.13
MBD1-223	ENST00000590215	NAIP	Q13075	1403 aa		28.35	■■■□□ 2.13
MBD1-223	ENST00000590215	VWDE	Q8N2E2	1590 aa		28.34	■■■□□ 2.13
MBD1-223	ENST00000590215	ZC3H13	Q5T200	1668 aa	Known RBP	28.34	■■■□□ 2.13
MBD1-223	ENST00000590215	HFM1	A2PYH4	1435 aa		28.34	■■■□□ 2.13
MBD1-223	ENST00000590215	PLPPR3	Q6T4P5	718 aa		28.32	■■■□□ 2.12
MBD1-223	ENST00000590215	NPAT	Q14207	1427 aa		28.32	■■■□□ 2.12
MBD1-223	ENST00000590215	KANK1	Q14678	1352 aa		28.31	■■■□□ 2.12
MBD1-223	ENST00000590215	SETD1B	Q9UPS6	1966 aa	Known RBP	28.31	■■■□□ 2.12
MBD1-223	ENST00000590215	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	28.3	■■■□□ 2.12
MBD1-223	ENST00000590215	LMTK2	Q8IWU2	1503 aa		28.29	■■■□□ 2.12
MBD1-223	ENST00000590215	PZP	P20742	1482 aa		28.29	■■■□□ 2.12
MBD1-223	ENST00000590215	UNC13B	O14795	1591 aa		28.28	■■■□□ 2.12
MBD1-223	ENST00000590215	GCC2	Q8IWJ2	1684 aa		28.27	■■■□□ 2.12
MBD1-223	ENST00000590215	ARHGAP31	Q2M1Z3	1444 aa		28.26	■■■□□ 2.11
MBD1-223	ENST00000590215	CEP152	O94986	1710 aa		28.25	■■■□□ 2.11
MBD1-223	ENST00000590215	CAMSAP1	Q5T5Y3	1602 aa		28.22	■■■□□ 2.11
MBD1-223	ENST00000590215	LMTK3	Q96Q04	1460 aa		28.21	■■■□□ 2.11
MBD1-223	ENST00000590215	FBXO31	Q5XUX0	539 aa	Predicted RBP	28.2	■■■□□ 2.1
MBD1-223	ENST00000590215	PREX1	Q8TCU6	1659 aa		28.19	■■■□□ 2.1
MBD1-223	ENST00000590215	NUP155	O75694	1391 aa		28.17	■■■□□ 2.1
MBD1-223	ENST00000590215	UHRF1BP1	Q6BDS2	1440 aa		28.17	■■■□□ 2.1
MBD1-223	ENST00000590215	IQGAP3	Q86VI3	1631 aa		28.16	■■■□□ 2.1
MBD1-223	ENST00000590215	EFCAB6	Q5THR3	1501 aa		28.15	■■■□□ 2.1
MBD1-223	ENST00000590215	SPATA31D1	Q6ZQQ2	1576 aa		28.15	■■■□□ 2.1
MBD1-223	ENST00000590215	ERVK-7	P63135	1459 aa		28.15	■■■□□ 2.1
MBD1-223	ENST00000590215	TNR	Q92752	1358 aa		28.14	■■■□□ 2.1
MBD1-223	ENST00000590215	TET3	O43151	1660 aa		28.13	■■■□□ 2.09
MBD1-223	ENST00000590215	RPRD2	Q5VT52	1461 aa	Known RBP	28.11	■■■□□ 2.09
MBD1-223	ENST00000590215	SETD5	Q9C0A6	1442 aa		28.1	■■■□□ 2.09
MBD1-223	ENST00000590215	MYO3A	Q8NEV4	1616 aa		28.08	■■■□□ 2.09
MBD1-223	ENST00000590215	NOS1	P29475	1434 aa		28.07	■■■□□ 2.08
MBD1-223	ENST00000590215	ACIN1	Q9UKV3	1341 aa	Known RBP	28.06	■■■□□ 2.08
MBD1-223	ENST00000590215	NLRP1	Q9C000	1473 aa		28.06	■■■□□ 2.08
MBD1-223	ENST00000590215	A2ML1	A8K2U0	1454 aa		28.05	■■■□□ 2.08
MBD1-223	ENST00000590215	ZNF142	P52746	1687 aa	Predicted RBP	28.05	■■■□□ 2.08
MBD1-223	ENST00000590215	CFAP65	Q6ZU64	1925 aa	Known RBP	28.04	■■■□□ 2.08
MBD1-223	ENST00000590215	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	28.03	■■■□□ 2.08
MBD1-223	ENST00000590215	HSPA2	P54652	639 aa		28.03	■■■□□ 2.08
MBD1-223	ENST00000590215		E9PCH4	1651 aa		28.01	■■■□□ 2.07
MBD1-223	ENST00000590215	TRIM52	Q96A61	297 aa		28.01	■■■□□ 2.07
MBD1-223	ENST00000590215	RAB3GAP2	Q9H2M9	1393 aa		27.99	■■■□□ 2.07
MBD1-223	ENST00000590215	HRC	P23327	699 aa		27.99	■■■□□ 2.07
MBD1-223	ENST00000590215	SYNM	O15061	1565 aa		27.97	■■■□□ 2.07
MBD1-223	ENST00000590215	SLC52A1	Q9NWF4	448 aa		27.95	■■■□□ 2.06
MBD1-223	ENST00000590215	SLC4A1AP	Q9BWU0	796 aa	Known RBP	27.93	■■■□□ 2.06
MBD1-223	ENST00000590215	PTPRT	O14522	1441 aa		27.92	■■■□□ 2.06
MBD1-223	ENST00000590215	UGGT1	Q9NYU2	1555 aa		27.92	■■■□□ 2.06
MBD1-223	ENST00000590215	PLA2R1	Q13018	1463 aa		27.92	■■■□□ 2.06
MBD1-223	ENST00000590215	IDI1	Q13907	227 aa		27.92	■■■□□ 2.06
MBD1-223	ENST00000590215	TRIM26	Q12899	539 aa	Predicted RBP	27.91	■■■□□ 2.06
MBD1-223	ENST00000590215	PKD2	Q13563	968 aa		27.91	■■■□□ 2.06
MBD1-223	ENST00000590215	THEMIS	Q8N1K5	641 aa	Predicted RBP	27.91	■■■□□ 2.06
MBD1-223	ENST00000590215	MPHOSPH9	Q99550	1183 aa		27.88	■■■□□ 2.05
MBD1-223	ENST00000590215	PIK3C2B	O00750	1634 aa		27.86	■■■□□ 2.05
MBD1-223	ENST00000590215	STRC	Q7RTU9	1775 aa		27.86	■■■□□ 2.05
MBD1-223	ENST00000590215	KDM5A	P29375	1690 aa	Known RBP	27.85	■■■□□ 2.05
MBD1-223	ENST00000590215	UBR1	Q8IWV7	1749 aa		27.85	■■■□□ 2.05
MBD1-223	ENST00000590215	SPHKAP	Q2M3C7	1700 aa		27.83	■■■□□ 2.05
MBD1-223	ENST00000590215	ADGRB3	O60242	1522 aa		27.8	■■■□□ 2.04
MBD1-223	ENST00000590215	TRPM2	O94759	1503 aa		27.8	■■■□□ 2.04
MBD1-223	ENST00000590215	ARHGAP23	Q9P227	1491 aa		27.79	■■■□□ 2.04
MBD1-223	ENST00000590215	SLIT1	O75093	1534 aa		27.78	■■■□□ 2.04
MBD1-223	ENST00000590215	DMRT2	Q9Y5R5	561 aa		27.78	■■■□□ 2.04
MBD1-223	ENST00000590215	NCKAP5L	Q9HCH0	1330 aa		27.77	■■■□□ 2.04
MBD1-223	ENST00000590215	ANKLE2	Q86XL3	938 aa		27.77	■■■□□ 2.04
MBD1-223	ENST00000590215	STAG3	Q9UJ98	1225 aa		27.77	■■■□□ 2.04
MBD1-223	ENST00000590215	TMEM2	Q9UHN6	1383 aa		27.76	■■■□□ 2.03
MBD1-223	ENST00000590215	TMEM131L	A2VDJ0	1609 aa		27.75	■■■□□ 2.03
MBD1-223	ENST00000590215	FOXD1	Q16676	465 aa		27.75	■■■□□ 2.03
MBD1-223	ENST00000590215	MED14	O60244	1454 aa		27.71	■■■□□ 2.03
MBD1-223	ENST00000590215	CLTCL1	P53675	1640 aa		27.7	■■■□□ 2.03
MBD1-223	ENST00000590215	NEURL4	Q96JN8	1562 aa		27.7	■■■□□ 2.03
MBD1-223	ENST00000590215	LTK	P29376	864 aa		27.7	■■■□□ 2.02
MBD1-223	ENST00000590215	POLR1A	O95602	1720 aa	Predicted RBP	27.69	■■■□□ 2.02
MBD1-223	ENST00000590215	SCAF11	Q99590	1463 aa	Known RBP	27.68	■■■□□ 2.02
MBD1-223	ENST00000590215	TXNDC2	Q86VQ3	553 aa		27.67	■■■□□ 2.02
MBD1-223	ENST00000590215	ZFYVE9	O95405	1425 aa		27.67	■■■□□ 2.02
MBD1-223	ENST00000590215	CHGA	P10645	457 aa	Known RBP	27.66	■■■□□ 2.02
MBD1-223	ENST00000590215	EID1	Q9Y6B2	187 aa		27.66	■■■□□ 2.02
MBD1-223	ENST00000590215	MYO5B	Q9ULV0	1848 aa		27.66	■■■□□ 2.02
MBD1-223	ENST00000590215	NPHP4	O75161	1426 aa	Predicted RBP	27.64	■■■□□ 2.02
MBD1-223	ENST00000590215	CCDC144A	A2RUR9	1427 aa		27.63	■■■□□ 2.01
MBD1-223	ENST00000590215	RIMS2	Q9UQ26	1411 aa		27.63	■■■□□ 2.01
MBD1-223	ENST00000590215	ANKRD30B	Q9BXX2	1392 aa		27.62	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 76 ms