RNA–Protein interactions for RNA: ENST00000583667.1

GGA3-217, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 4

Gene GGA3, Length 531 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-217ENST00000583667 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.24■□□□□ 0.51
GGA3-217ENST00000583667 SAMD9LQ8IVG5 1584 aa18.24■□□□□ 0.51
GGA3-217ENST00000583667 SPAG9O60271 1321 aaKnown RBP18.23■□□□□ 0.51
GGA3-217ENST00000583667 CCDC18Q5T9S5 1454 aa18.23■□□□□ 0.51
GGA3-217ENST00000583667 UPF1Q92900 1129 aaKnown RBP eCLIP18.23■□□□□ 0.51
GGA3-217ENST00000583667 NPHP4O75161 1426 aaPredicted RBP18.23■□□□□ 0.51
GGA3-217ENST00000583667 FBXO31Q5XUX0 539 aaPredicted RBP18.22■□□□□ 0.51
GGA3-217ENST00000583667 MED14O60244 1454 aa18.21■□□□□ 0.51
GGA3-217ENST00000583667 SETD1AO15047 1707 aaKnown RBP18.21■□□□□ 0.51
GGA3-217ENST00000583667 THEMISQ8N1K5 641 aaPredicted RBP18.21■□□□□ 0.51
GGA3-217ENST00000583667 PREX2Q70Z35 1606 aa18.2■□□□□ 0.5
GGA3-217ENST00000583667 RNF17Q9BXT8 1623 aaKnown RBP18.2■□□□□ 0.5
GGA3-217ENST00000583667 TNRQ92752 1358 aa18.19■□□□□ 0.5
GGA3-217ENST00000583667 A2MP01023 1474 aa18.19■□□□□ 0.5
GGA3-217ENST00000583667 PLXNC1O60486 1568 aa18.18■□□□□ 0.5
GGA3-217ENST00000583667 STRCP1A6NGW2 1772 aa18.18■□□□□ 0.5
GGA3-217ENST00000583667 HNRNPMP52272 730 aaKnown RBP eCLIP18.18■□□□□ 0.5
GGA3-217ENST00000583667 SRCAPQ6ZRS2 3230 aa18.18■□□□□ 0.5
GGA3-217ENST00000583667 ZNF777Q9ULD5 760 aaPredicted RBP18.17■□□□□ 0.5
GGA3-217ENST00000583667 RRBP1Q9P2E9 1410 aaKnown RBP18.15■□□□□ 0.5
GGA3-217ENST00000583667 DEPDC5O75140 1603 aa18.14■□□□□ 0.49
GGA3-217ENST00000583667 FAM135BQ49AJ0 1406 aa18.14■□□□□ 0.49
GGA3-217ENST00000583667 LRRIQ1Q96JM4 1722 aa18.13■□□□□ 0.49
GGA3-217ENST00000583667 ATP7AQ04656 1500 aa18.13■□□□□ 0.49
GGA3-217ENST00000583667 SYNMO15061 1565 aa18.11■□□□□ 0.49
GGA3-217ENST00000583667 IQGAP1P46940 1657 aa18.1■□□□□ 0.49
GGA3-217ENST00000583667 SYCP2Q9BX26 1530 aa18.1■□□□□ 0.49
GGA3-217ENST00000583667 MTUS2Q5JR59 1369 aa18.1■□□□□ 0.49
GGA3-217ENST00000583667 EHBP1L1Q8N3D4 1523 aa18.09■□□□□ 0.49
GGA3-217ENST00000583667 MIA2Q96PC5 1412 aa18.09■□□□□ 0.49
GGA3-217ENST00000583667 UGGT1Q9NYU2 1555 aa18.08■□□□□ 0.49
GGA3-217ENST00000583667 FAM135AQ9P2D6 1515 aa18.08■□□□□ 0.49
GGA3-217ENST00000583667 CDC42BPAQ5VT25 1732 aa18.07■□□□□ 0.48
GGA3-217ENST00000583667 INO80Q9ULG1 1556 aaPredicted RBP18.07■□□□□ 0.48
GGA3-217ENST00000583667 PZPP20742 1482 aa18.07■□□□□ 0.48
GGA3-217ENST00000583667 NLRP1Q9C000 1473 aa18.07■□□□□ 0.48
GGA3-217ENST00000583667 CCNB3Q8WWL7 1395 aa18.05■□□□□ 0.48
GGA3-217ENST00000583667 KIAA1107Q9UPP5 1409 aa18.05■□□□□ 0.48
GGA3-217ENST00000583667 TRIM52Q96A61 297 aa18.04■□□□□ 0.48
GGA3-217ENST00000583667 GPATCH8Q9UKJ3 1502 aaKnown RBP18.02■□□□□ 0.47
GGA3-217ENST00000583667 NCOA2Q15596 1464 aa18.01■□□□□ 0.47
GGA3-217ENST00000583667 WASHC2CQ9Y4E1 1318 aa18■□□□□ 0.47
GGA3-217ENST00000583667 XIRP1Q702N8 1843 aaKnown RBP18■□□□□ 0.47
GGA3-217ENST00000583667 KIF3BO15066 747 aa18■□□□□ 0.47
GGA3-217ENST00000583667 DHX29Q7Z478 1369 aaKnown RBP18■□□□□ 0.47
GGA3-217ENST00000583667 ADGBQ8N7X0 1667 aa17.99■□□□□ 0.47
GGA3-217ENST00000583667 CFDP1Q9UEE9 299 aaPredicted RBP17.98■□□□□ 0.47
GGA3-217ENST00000583667 ZC3H13Q5T200 1668 aaKnown RBP17.98■□□□□ 0.47
GGA3-217ENST00000583667 PLEKHH2Q8IVE3 1493 aa17.97■□□□□ 0.47
GGA3-217ENST00000583667 ZNF772Q68DY9 489 aaPredicted RBP17.97■□□□□ 0.47
GGA3-217ENST00000583667 KDM5DQ9BY66 1539 aa17.97■□□□□ 0.47
GGA3-217ENST00000583667 MYOM3Q5VTT5 1437 aa17.97■□□□□ 0.47
GGA3-217ENST00000583667 ROBO1Q9Y6N7 1651 aa17.96■□□□□ 0.47
GGA3-217ENST00000583667 JCADQ9P266 1359 aa17.95■□□□□ 0.46
GGA3-217ENST00000583667 FGD6Q6ZV73 1430 aa17.95■□□□□ 0.46
GGA3-217ENST00000583667 LTKP29376 864 aa17.94■□□□□ 0.46
GGA3-217ENST00000583667 TMEM94Q12767 1356 aa17.93■□□□□ 0.46
GGA3-217ENST00000583667 RXRBP28702 533 aa17.93■□□□□ 0.46
GGA3-217ENST00000583667 SCAF11Q99590 1463 aaKnown RBP17.91■□□□□ 0.46
GGA3-217ENST00000583667 TXNDC2Q86VQ3 553 aa17.91■□□□□ 0.46
GGA3-217ENST00000583667 ZNF644Q9H582 1327 aaPredicted RBP17.91■□□□□ 0.46
GGA3-217ENST00000583667 RTEL1-TNFRSF6BF6WH68 1400 aa17.9■□□□□ 0.46
GGA3-217ENST00000583667 HRCP23327 699 aa17.9■□□□□ 0.46
GGA3-217ENST00000583667 RBM33Q96EV2 1170 aaKnown RBP17.9■□□□□ 0.46
GGA3-217ENST00000583667 MEX3CQ5U5Q3 659 aaKnown RBP17.89■□□□□ 0.45
GGA3-217ENST00000583667 LRP6O75581 1613 aa17.89■□□□□ 0.45
GGA3-217ENST00000583667 PROSER2Q86WR7 435 aaPredicted RBP17.87■□□□□ 0.45
GGA3-217ENST00000583667 SLAIN2Q9P270 581 aa17.87■□□□□ 0.45
GGA3-217ENST00000583667 SPATA31A6Q5VVP1 1343 aa17.87■□□□□ 0.45
GGA3-217ENST00000583667 MBD5Q9P267 1494 aa17.87■□□□□ 0.45
GGA3-217ENST00000583667 PHLPP1O60346 1717 aa17.85■□□□□ 0.45
GGA3-217ENST00000583667 KCNA6P17658 529 aa17.85■□□□□ 0.45
GGA3-217ENST00000583667 CDK12Q9NYV4 1490 aaPredicted RBP17.85■□□□□ 0.45
GGA3-217ENST00000583667 ARHGAP23Q9P227 1491 aa17.83■□□□□ 0.45
GGA3-217ENST00000583667 ZEB1P37275 1124 aaPredicted RBP17.83■□□□□ 0.44
GGA3-217ENST00000583667 FAM50AQ14320 339 aaKnown RBP17.82■□□□□ 0.44
GGA3-217ENST00000583667 EID1Q9Y6B2 187 aa17.82■□□□□ 0.44
GGA3-217ENST00000583667 PTPN23Q9H3S7 1636 aa17.82■□□□□ 0.44
GGA3-217ENST00000583667 UBR1Q8IWV7 1749 aa17.81■□□□□ 0.44
GGA3-217ENST00000583667 SLIT1O75093 1534 aa17.81■□□□□ 0.44
GGA3-217ENST00000583667 ERVK-7P63135 1459 aa17.81■□□□□ 0.44
GGA3-217ENST00000583667 ZRANB1Q9UGI0 708 aa17.79■□□□□ 0.44
GGA3-217ENST00000583667 COL16A1Q07092 1604 aaPredicted RBP17.79■□□□□ 0.44
GGA3-217ENST00000583667 MSH6P52701 1360 aa17.78■□□□□ 0.44
GGA3-217ENST00000583667 SLC26A8Q96RN1 970 aa17.76■□□□□ 0.43
GGA3-217ENST00000583667 PRDM15P57071 1507 aaPredicted RBP17.76■□□□□ 0.43
GGA3-217ENST00000583667 ABCC3O15438 1527 aa17.75■□□□□ 0.43
GGA3-217ENST00000583667 NUTM2BA6NNL0 878 aaPredicted RBP17.74■□□□□ 0.43
GGA3-217ENST00000583667 NUTM2EB1AL46 878 aaPredicted RBP17.74■□□□□ 0.43
GGA3-217ENST00000583667 NUTM2DQ5VT03 806 aaPredicted RBP17.74■□□□□ 0.43
GGA3-217ENST00000583667 NUTM2AQ8IVF1 878 aaPredicted RBP17.74■□□□□ 0.43
GGA3-217ENST00000583667 AFF2P51816 1311 aa17.73■□□□□ 0.43
GGA3-217ENST00000583667 RGS12O14924 1447 aa17.73■□□□□ 0.43
GGA3-217ENST00000583667 SETD5Q9C0A6 1442 aa17.73■□□□□ 0.43
GGA3-217ENST00000583667 FOXD1Q16676 465 aa17.73■□□□□ 0.43
GGA3-217ENST00000583667 TMEM2Q9UHN6 1383 aa17.73■□□□□ 0.43
GGA3-217ENST00000583667 SETBP1Q9Y6X0 1596 aa17.73■□□□□ 0.43
GGA3-217ENST00000583667 CCER1Q8TC90 406 aaPredicted RBP17.71■□□□□ 0.43
GGA3-217ENST00000583667 CLSPNQ9HAW4 1339 aa17.71■□□□□ 0.42
GGA3-217ENST00000583667 ITGAEP38570 1179 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms