RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 NUP155O75694 1391 aa22.44■■□□□ 1.18
SS18-215ENST00000580642 BCORL1Q5H9F3 1711 aa22.44■■□□□ 1.18
SS18-215ENST00000580642 MPHOSPH9Q99550 1183 aa22.44■■□□□ 1.18
SS18-215ENST00000580642 YEATS2Q9ULM3 1422 aa22.42■■□□□ 1.18
SS18-215ENST00000580642 DEPDC5O75140 1603 aa22.41■■□□□ 1.18
SS18-215ENST00000580642 SLC4A1APQ9BWU0 796 aaKnown RBP22.4■■□□□ 1.18
SS18-215ENST00000580642 AGLP35573 1532 aa22.4■■□□□ 1.18
SS18-215ENST00000580642 ARHGEF40Q8TER5 1519 aa22.4■■□□□ 1.18
SS18-215ENST00000580642 PZPP20742 1482 aa22.4■■□□□ 1.18
SS18-215ENST00000580642 KANK1Q14678 1352 aa22.39■■□□□ 1.18
SS18-215ENST00000580642 KIF3BO15066 747 aa22.39■■□□□ 1.17
SS18-215ENST00000580642 PPP6R1Q9UPN7 881 aa22.37■■□□□ 1.17
SS18-215ENST00000580642 RNF17Q9BXT8 1623 aaKnown RBP22.37■■□□□ 1.17
SS18-215ENST00000580642 PRDM15P57071 1507 aaPredicted RBP22.36■■□□□ 1.17
SS18-215ENST00000580642 IQGAP3Q86VI3 1631 aa22.36■■□□□ 1.17
SS18-215ENST00000580642 FAM135AQ9P2D6 1515 aa22.35■■□□□ 1.17
SS18-215ENST00000580642 VWDEQ8N2E2 1590 aa22.34■■□□□ 1.17
SS18-215ENST00000580642 LMTK2Q8IWU2 1503 aa22.31■■□□□ 1.16
SS18-215ENST00000580642 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.3■■□□□ 1.16
SS18-215ENST00000580642 TIMELESSQ9UNS1 1208 aa22.3■■□□□ 1.16
SS18-215ENST00000580642 MROH1Q8NDA8 1641 aa22.29■■□□□ 1.16
SS18-215ENST00000580642 PKD2Q13563 968 aa22.29■■□□□ 1.16
SS18-215ENST00000580642 ANKRD30BQ9BXX2 1392 aa22.26■■□□□ 1.15
SS18-215ENST00000580642 GGT6Q6P531 493 aa22.24■■□□□ 1.15
SS18-215ENST00000580642 TET3O43151 1660 aa22.23■■□□□ 1.15
SS18-215ENST00000580642 RPRD2Q5VT52 1461 aaKnown RBP22.22■■□□□ 1.15
SS18-215ENST00000580642 ZC3H13Q5T200 1668 aaKnown RBP22.21■■□□□ 1.15
SS18-215ENST00000580642 WASHC2CQ9Y4E1 1318 aa22.21■■□□□ 1.15
SS18-215ENST00000580642 ARHGAP31Q2M1Z3 1444 aa22.2■■□□□ 1.14
SS18-215ENST00000580642 ABCC3O15438 1527 aa22.2■■□□□ 1.14
SS18-215ENST00000580642 EFCAB6Q5THR3 1501 aa22.18■■□□□ 1.14
SS18-215ENST00000580642 PTPRTO14522 1441 aa22.16■■□□□ 1.14
SS18-215ENST00000580642 FOXD1Q16676 465 aa22.14■■□□□ 1.13
SS18-215ENST00000580642 CNTLNQ9NXG0 1405 aa22.13■■□□□ 1.13
SS18-215ENST00000580642 SIN3AQ96ST3 1273 aa22.12■■□□□ 1.13
SS18-215ENST00000580642 ARID4BQ4LE39 1312 aaPredicted RBP22.11■■□□□ 1.13
SS18-215ENST00000580642 E9PCH4 1651 aa22.11■■□□□ 1.13
SS18-215ENST00000580642 PLA2R1Q13018 1463 aa22.1■■□□□ 1.13
SS18-215ENST00000580642 CCDC144AA2RUR9 1427 aa22.1■■□□□ 1.13
SS18-215ENST00000580642 NPATQ14207 1427 aa22.1■■□□□ 1.13
SS18-215ENST00000580642 SIGLEC1Q9BZZ2 1709 aa22.1■■□□□ 1.13
SS18-215ENST00000580642 TRPM2O94759 1503 aa22.1■■□□□ 1.13
SS18-215ENST00000580642 ESF1Q9H501 851 aaKnown RBP22.09■■□□□ 1.13
SS18-215ENST00000580642 CAMSAP1Q5T5Y3 1602 aa22.09■■□□□ 1.13
SS18-215ENST00000580642 NEUROD1Q13562 356 aa22.08■■□□□ 1.13
SS18-215ENST00000580642 TONSLQ96HA7 1378 aa22.08■■□□□ 1.12
SS18-215ENST00000580642 CEP152O94986 1710 aa22.08■■□□□ 1.12
SS18-215ENST00000580642 NOS1P29475 1434 aa22.06■■□□□ 1.12
SS18-215ENST00000580642 NEURL4Q96JN8 1562 aa22.04■■□□□ 1.12
SS18-215ENST00000580642 SPHKAPQ2M3C7 1700 aa22.03■■□□□ 1.12
SS18-215ENST00000580642 MLECQ14165 292 aa22.01■■□□□ 1.11
SS18-215ENST00000580642 STAC3Q96MF2 364 aa22■■□□□ 1.11
SS18-215ENST00000580642 SLC52A1Q9NWF4 448 aa22■■□□□ 1.11
SS18-215ENST00000580642 MROH2AA6NES4 1674 aa22■■□□□ 1.11
SS18-215ENST00000580642 ZMYM3Q14202 1370 aa21.99■■□□□ 1.11
SS18-215ENST00000580642 CLTCQ00610 1675 aaKnown RBP21.98■■□□□ 1.11
SS18-215ENST00000580642 PPP1R15AO75807 674 aaPredicted RBP21.97■■□□□ 1.11
SS18-215ENST00000580642 ERVK-7P63135 1459 aa21.96■■□□□ 1.11
SS18-215ENST00000580642 L3MBTL2Q969R5 705 aa21.95■■□□□ 1.1
SS18-215ENST00000580642 SPATA31D1Q6ZQQ2 1576 aa21.95■■□□□ 1.1
SS18-215ENST00000580642 SPATA31E1Q6ZUB1 1445 aa21.94■■□□□ 1.1
SS18-215ENST00000580642 PREX1Q8TCU6 1659 aa21.92■■□□□ 1.1
SS18-215ENST00000580642 CLTCL1P53675 1640 aa21.92■■□□□ 1.1
SS18-215ENST00000580642 PIK3C2BO00750 1634 aa21.91■■□□□ 1.1
SS18-215ENST00000580642 SYNMO15061 1565 aa21.89■■□□□ 1.09
SS18-215ENST00000580642 ADAMTSL3P82987 1691 aa21.88■■□□□ 1.09
SS18-215ENST00000580642 FER1L4A9Z1Z3 1794 aa21.87■■□□□ 1.09
SS18-215ENST00000580642 RPGRIP1LQ68CZ1 1315 aa21.87■■□□□ 1.09
SS18-215ENST00000580642 UHRF1BP1Q6BDS2 1440 aa21.87■■□□□ 1.09
SS18-215ENST00000580642 FBXO31Q5XUX0 539 aaPredicted RBP21.86■■□□□ 1.09
SS18-215ENST00000580642 ADGRB3O60242 1522 aa21.85■■□□□ 1.09
SS18-215ENST00000580642 IDI1Q13907 227 aa21.84■■□□□ 1.09
SS18-215ENST00000580642 TNRQ92752 1358 aa21.84■■□□□ 1.09
SS18-215ENST00000580642 KIF1BO60333 1816 aa21.83■■□□□ 1.09
SS18-215ENST00000580642 NLRP1Q9C000 1473 aa21.83■■□□□ 1.08
SS18-215ENST00000580642 UGGT1Q9NYU2 1555 aa21.82■■□□□ 1.08
SS18-215ENST00000580642 DCAF11Q8TEB1 546 aa21.81■■□□□ 1.08
SS18-215ENST00000580642 MADDQ8WXG6 1647 aa21.8■■□□□ 1.08
SS18-215ENST00000580642 RGL3Q3MIN7 710 aa21.8■■□□□ 1.08
SS18-215ENST00000580642 C3P01024 1663 aa21.79■■□□□ 1.08
SS18-215ENST00000580642 MYOM2P54296 1465 aa21.78■■□□□ 1.08
SS18-215ENST00000580642 KDM5AP29375 1690 aaKnown RBP21.78■■□□□ 1.08
SS18-215ENST00000580642 CFAP65Q6ZU64 1925 aaKnown RBP21.76■■□□□ 1.07
SS18-215ENST00000580642 ZFYVE9O95405 1425 aa21.76■■□□□ 1.07
SS18-215ENST00000580642 TMEM131LA2VDJ0 1609 aa21.76■■□□□ 1.07
SS18-215ENST00000580642 PRAG1Q86YV5 1406 aa21.75■■□□□ 1.07
SS18-215ENST00000580642 CHGAP10645 457 aaKnown RBP21.74■■□□□ 1.07
SS18-215ENST00000580642 RIMS1Q86UR5 1692 aaKnown RBP21.73■■□□□ 1.07
SS18-215ENST00000580642 VGFO15240 615 aaPredicted RBP21.73■■□□□ 1.07
SS18-215ENST00000580642 ZNF326Q5BKZ1 582 aaKnown RBP21.73■■□□□ 1.07
SS18-215ENST00000580642 STAG3Q9UJ98 1225 aa21.73■■□□□ 1.07
SS18-215ENST00000580642 CEBPAP49715 358 aaPredicted RBP21.72■■□□□ 1.07
SS18-215ENST00000580642 HDGFP51858 240 aaKnown RBP21.72■■□□□ 1.07
SS18-215ENST00000580642 NBPF8Q3BBV2 869 aa21.72■■□□□ 1.07
SS18-215ENST00000580642 A2ML1A8K2U0 1454 aa21.71■■□□□ 1.07
SS18-215ENST00000580642 RALGAPBQ86X10 1494 aa21.71■■□□□ 1.07
SS18-215ENST00000580642 NRXN1Q9ULB1 1477 aa21.71■■□□□ 1.07
SS18-215ENST00000580642 KDM2AQ9Y2K7 1162 aa21.71■■□□□ 1.07
SS18-215ENST00000580642 PTPRMP28827 1452 aa21.7■■□□□ 1.06
SS18-215ENST00000580642 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms