RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 KIF15Q9NS87 1388 aa25.63■■□□□ 1.69
SREBF1-219ENST00000580540 SHANK2Q9UPX8 1470 aa25.63■■□□□ 1.69
SREBF1-219ENST00000580540 CROCC2H7BZ55 1655 aa25.62■■□□□ 1.69
SREBF1-219ENST00000580540 NPATQ14207 1427 aa25.62■■□□□ 1.69
SREBF1-219ENST00000580540 DUOX2Q9NRD8 1548 aa25.6■■□□□ 1.69
SREBF1-219ENST00000580540 PTPRKQ15262 1439 aa25.6■■□□□ 1.69
SREBF1-219ENST00000580540 KDM5DQ9BY66 1539 aa25.58■■□□□ 1.69
SREBF1-219ENST00000580540 ANKRD30AQ9BXX3 1397 aa25.57■■□□□ 1.68
SREBF1-219ENST00000580540 FBXO31Q5XUX0 539 aaPredicted RBP25.56■■□□□ 1.68
SREBF1-219ENST00000580540 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.55■■□□□ 1.688e-7■□□□□ 10.1
SREBF1-219ENST00000580540 EIF2AK4Q9P2K8 1649 aaKnown RBP25.54■■□□□ 1.68
SREBF1-219ENST00000580540 FAM135AQ9P2D6 1515 aa25.53■■□□□ 1.68
SREBF1-219ENST00000580540 RNF17Q9BXT8 1623 aaKnown RBP25.52■■□□□ 1.68
SREBF1-219ENST00000580540 ERBINQ96RT1 1412 aa25.51■■□□□ 1.67
SREBF1-219ENST00000580540 ITGAEP38570 1179 aa25.5■■□□□ 1.67
SREBF1-219ENST00000580540 NCOA1Q15788 1441 aa25.5■■□□□ 1.67
SREBF1-219ENST00000580540 PZPP20742 1482 aa25.49■■□□□ 1.67
SREBF1-219ENST00000580540 TNRQ92752 1358 aa25.49■■□□□ 1.67
SREBF1-219ENST00000580540 DMRT2Q9Y5R5 561 aa25.49■■□□□ 1.67
SREBF1-219ENST00000580540 MYO3AQ8NEV4 1616 aa25.48■■□□□ 1.67
SREBF1-219ENST00000580540 ABCC3O15438 1527 aa25.47■■□□□ 1.67
SREBF1-219ENST00000580540 STRCQ7RTU9 1775 aa25.46■■□□□ 1.67
SREBF1-219ENST00000580540 MROH1Q8NDA8 1641 aa25.45■■□□□ 1.67
SREBF1-219ENST00000580540 ADGRL2O95490 1459 aa25.44■■□□□ 1.66
SREBF1-219ENST00000580540 CAMSAP1Q5T5Y3 1602 aa25.44■■□□□ 1.66
SREBF1-219ENST00000580540 CEP170BQ9Y4F5 1589 aaPredicted RBP25.44■■□□□ 1.66
SREBF1-219ENST00000580540 KANK1Q14678 1352 aa25.44■■□□□ 1.66
SREBF1-219ENST00000580540 CEP152O94986 1710 aa25.43■■□□□ 1.66
SREBF1-219ENST00000580540 ZC3H13Q5T200 1668 aaKnown RBP25.42■■□□□ 1.66
SREBF1-219ENST00000580540 ILDR1Q86SU0 546 aaPredicted RBP25.42■■□□□ 1.66
SREBF1-219ENST00000580540 NCKAP5LQ9HCH0 1330 aa25.41■■□□□ 1.66
SREBF1-219ENST00000580540 A2ML1A8K2U0 1454 aa25.4■■□□□ 1.66
SREBF1-219ENST00000580540 ZNF142P52746 1687 aaPredicted RBP25.39■■□□□ 1.66
SREBF1-219ENST00000580540 ANKRD50Q9ULJ7 1429 aa25.38■■□□□ 1.65
SREBF1-219ENST00000580540 PRDM15P57071 1507 aaPredicted RBP25.38■■□□□ 1.65
SREBF1-219ENST00000580540 CFAP65Q6ZU64 1925 aaKnown RBP25.38■■□□□ 1.65
SREBF1-219ENST00000580540 PTPRTO14522 1441 aa25.35■■□□□ 1.65
SREBF1-219ENST00000580540 DEPDC5O75140 1603 aa25.34■■□□□ 1.65
SREBF1-219ENST00000580540 ERVK-7P63135 1459 aa25.34■■□□□ 1.65
SREBF1-219ENST00000580540 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.33■■□□□ 1.65
SREBF1-219ENST00000580540 PKD2Q13563 968 aa25.33■■□□□ 1.65
SREBF1-219ENST00000580540 NLRP1Q9C000 1473 aa25.32■■□□□ 1.64
SREBF1-219ENST00000580540 ROCK1Q13464 1354 aa25.31■■□□□ 1.64
SREBF1-219ENST00000580540 THEMISQ8N1K5 641 aaPredicted RBP25.31■■□□□ 1.64
SREBF1-219ENST00000580540 PLA2R1Q13018 1463 aa25.31■■□□□ 1.64
SREBF1-219ENST00000580540 SPATA31D1Q6ZQQ2 1576 aa25.31■■□□□ 1.64
SREBF1-219ENST00000580540 CERKQ8TCT0 537 aa25.29■■□□□ 1.64
SREBF1-219ENST00000580540 ARHGAP31Q2M1Z3 1444 aa25.29■■□□□ 1.64
SREBF1-219ENST00000580540 UGGT1Q9NYU2 1555 aa25.28■■□□□ 1.64
SREBF1-219ENST00000580540 RRBP1Q9P2E9 1410 aaKnown RBP25.27■■□□□ 1.64
SREBF1-219ENST00000580540 FBXO41Q8TF61 875 aa25.26■■□□□ 1.63
SREBF1-219ENST00000580540 ANKLE2Q86XL3 938 aa25.25■■□□□ 1.63
SREBF1-219ENST00000580540 VWDEQ8N2E2 1590 aa25.25■■□□□ 1.63
SREBF1-219ENST00000580540 LMTK2Q8IWU2 1503 aa25.24■■□□□ 1.63
SREBF1-219ENST00000580540 STAG3Q9UJ98 1225 aa25.21■■□□□ 1.63
SREBF1-219ENST00000580540 EFCAB6Q5THR3 1501 aa25.18■■□□□ 1.62
SREBF1-219ENST00000580540 ZNF335Q9H4Z2 1342 aaPredicted RBP25.17■■□□□ 1.62
SREBF1-219ENST00000580540 NUP155O75694 1391 aa25.17■■□□□ 1.62
SREBF1-219ENST00000580540 IDI1Q13907 227 aa25.16■■□□□ 1.62
SREBF1-219ENST00000580540 POLR1AO95602 1720 aaPredicted RBP25.15■■□□□ 1.62
SREBF1-219ENST00000580540 UNC13BO14795 1591 aa25.15■■□□□ 1.62
SREBF1-219ENST00000580540 UBR1Q8IWV7 1749 aa25.13■■□□□ 1.61
SREBF1-219ENST00000580540 NEURL4Q96JN8 1562 aa25.12■■□□□ 1.61
SREBF1-219ENST00000580540 TET3O43151 1660 aa25.12■■□□□ 1.61
SREBF1-219ENST00000580540 NPHP4O75161 1426 aaPredicted RBP25.12■■□□□ 1.61
SREBF1-219ENST00000580540 NOS1P29475 1434 aa25.12■■□□□ 1.61
SREBF1-219ENST00000580540 TXNDC2Q86VQ3 553 aa25.11■■□□□ 1.61
SREBF1-219ENST00000580540 PIK3C2BO00750 1634 aa25.11■■□□□ 1.61
SREBF1-219ENST00000580540 LTBP4Q8N2S1 1624 aa25.11■■□□□ 1.61
SREBF1-219ENST00000580540 SYNMO15061 1565 aa25.1■■□□□ 1.61
SREBF1-219ENST00000580540 RPRD2Q5VT52 1461 aaKnown RBP25.09■■□□□ 1.61
SREBF1-219ENST00000580540 SLC52A1Q9NWF4 448 aa25.09■■□□□ 1.61
SREBF1-219ENST00000580540 EID1Q9Y6B2 187 aa25.09■■□□□ 1.61
SREBF1-219ENST00000580540 LTKP29376 864 aa25.07■■□□□ 1.6
SREBF1-219ENST00000580540 GCC2Q8IWJ2 1684 aa25.07■■□□□ 1.6
SREBF1-219ENST00000580540 NAIPQ13075 1403 aa25.06■■□□□ 1.6
SREBF1-219ENST00000580540 IQGAP3Q86VI3 1631 aa25.06■■□□□ 1.6
SREBF1-219ENST00000580540 MED14O60244 1454 aa25.05■■□□□ 1.6
SREBF1-219ENST00000580540 SCAF11Q99590 1463 aaKnown RBP25.04■■□□□ 1.6
SREBF1-219ENST00000580540 CHGAP10645 457 aaKnown RBP25.04■■□□□ 1.6
SREBF1-219ENST00000580540 TMEM2Q9UHN6 1383 aa25.04■■□□□ 1.6
SREBF1-219ENST00000580540 TRIM52Q96A61 297 aa25.03■■□□□ 1.6
SREBF1-219ENST00000580540 E9PCH4 1651 aa25.03■■□□□ 1.6
SREBF1-219ENST00000580540 SLIT1O75093 1534 aa25.02■■□□□ 1.6
SREBF1-219ENST00000580540 IQGAP1P46940 1657 aa25.02■■□□□ 1.6
SREBF1-219ENST00000580540 ARHGAP23Q9P227 1491 aa25.02■■□□□ 1.6
SREBF1-219ENST00000580540 ADGRB3O60242 1522 aa24.99■■□□□ 1.59
SREBF1-219ENST00000580540 HFM1A2PYH4 1435 aa24.98■■□□□ 1.59
SREBF1-219ENST00000580540 BCANQ96GW7 911 aa24.97■■□□□ 1.59
SREBF1-219ENST00000580540 SENP3Q9H4L4 574 aaPredicted RBP24.97■■□□□ 1.59
SREBF1-219ENST00000580540 KDM5AP29375 1690 aaKnown RBP24.96■■□□□ 1.59
SREBF1-219ENST00000580540 IQSEC2Q5JU85 1478 aa24.94■■□□□ 1.58
SREBF1-219ENST00000580540 UBAP1LF5GYI3 381 aa24.93■■□□□ 1.58
SREBF1-219ENST00000580540 PPP1R15AO75807 674 aaPredicted RBP24.92■■□□□ 1.58
SREBF1-219ENST00000580540 CPS1P31327 1500 aa24.91■■□□□ 1.58
SREBF1-219ENST00000580540 HDGFP51858 240 aaKnown RBP24.91■■□□□ 1.58
SREBF1-219ENST00000580540 MYO5BQ9ULV0 1848 aa24.91■■□□□ 1.58
SREBF1-219ENST00000580540 SLC26A8Q96RN1 970 aa24.9■■□□□ 1.58
SREBF1-219ENST00000580540 RIMS2Q9UQ26 1411 aa24.89■■□□□ 1.58
SREBF1-219ENST00000580540 NUTM2DQ5VT03 806 aaPredicted RBP24.89■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms