RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 CNTLNQ9NXG0 1405 aa19.59■□□□□ 0.73
VPS33B-208ENST00000574755 DCAF11Q8TEB1 546 aa19.58■□□□□ 0.73
VPS33B-208ENST00000574755 KDM2AQ9Y2K7 1162 aa19.58■□□□□ 0.73
VPS33B-208ENST00000574755 USP47Q96K76 1375 aa19.58■□□□□ 0.73
VPS33B-208ENST00000574755 ADGRL1O94910 1474 aa19.58■□□□□ 0.73
VPS33B-208ENST00000574755 RALGAPBQ86X10 1494 aa19.58■□□□□ 0.73
VPS33B-208ENST00000574755 KDM5CP41229 1560 aa19.57■□□□□ 0.72
VPS33B-208ENST00000574755 PLA2R1Q13018 1463 aa19.56■□□□□ 0.72
VPS33B-208ENST00000574755 INO80Q9ULG1 1556 aaPredicted RBP19.56■□□□□ 0.72
VPS33B-208ENST00000574755 ATP7AQ04656 1500 aa19.56■□□□□ 0.72
VPS33B-208ENST00000574755 KIF7Q2M1P5 1343 aa19.55■□□□□ 0.72
VPS33B-208ENST00000574755 SCAPERQ9BY12 1400 aa19.55■□□□□ 0.72
VPS33B-208ENST00000574755 MYT1LQ9UL68 1186 aa19.53■□□□□ 0.72
VPS33B-208ENST00000574755 CARD11Q9BXL7 1154 aa19.52■□□□□ 0.72
VPS33B-208ENST00000574755 BCORL1Q5H9F3 1711 aa19.51■□□□□ 0.71
VPS33B-208ENST00000574755 ATP10AO60312 1499 aa19.51■□□□□ 0.71
VPS33B-208ENST00000574755 RGL3Q3MIN7 710 aa19.51■□□□□ 0.71
VPS33B-208ENST00000574755 DEPDC5O75140 1603 aa19.5■□□□□ 0.71
VPS33B-208ENST00000574755 E9PCH4 1651 aa19.48■□□□□ 0.71
VPS33B-208ENST00000574755 ROCK2O75116 1388 aaKnown RBP19.47■□□□□ 0.71
VPS33B-208ENST00000574755 PRAG1Q86YV5 1406 aa19.47■□□□□ 0.71
VPS33B-208ENST00000574755 A2MP01023 1474 aa19.47■□□□□ 0.71
VPS33B-208ENST00000574755 TRPM1Q7Z4N2 1603 aa19.47■□□□□ 0.71
VPS33B-208ENST00000574755 CD109Q6YHK3 1445 aa19.46■□□□□ 0.71
VPS33B-208ENST00000574755 CFAP74Q9C0B2 1584 aa19.46■□□□□ 0.71
VPS33B-208ENST00000574755 ZNF518AQ6AHZ1 1483 aa19.45■□□□□ 0.7
VPS33B-208ENST00000574755 EIF2AK4Q9P2K8 1649 aaKnown RBP19.45■□□□□ 0.7
VPS33B-208ENST00000574755 POLR3GLQ9BT43 218 aa19.44■□□□□ 0.7
VPS33B-208ENST00000574755 KANK1Q14678 1352 aa19.44■□□□□ 0.7
VPS33B-208ENST00000574755 KIDINS220Q9ULH0 1771 aa19.44■□□□□ 0.7
VPS33B-208ENST00000574755 DHX29Q7Z478 1369 aaKnown RBP19.43■□□□□ 0.7
VPS33B-208ENST00000574755 ARID4BQ4LE39 1312 aaPredicted RBP19.43■□□□□ 0.7
VPS33B-208ENST00000574755 KIF3BO15066 747 aa19.43■□□□□ 0.7
VPS33B-208ENST00000574755 TET3O43151 1660 aa19.43■□□□□ 0.7
VPS33B-208ENST00000574755 PRKRIP1Q9H875 184 aaPredicted RBP19.43■□□□□ 0.7
VPS33B-208ENST00000574755 SPHKAPQ2M3C7 1700 aa19.43■□□□□ 0.7
VPS33B-208ENST00000574755 ST20-MTHFSA0A0A6YYL1 179 aa19.41■□□□□ 0.7
VPS33B-208ENST00000574755 TRPM2O94759 1503 aa19.41■□□□□ 0.7
VPS33B-208ENST00000574755 VWDEQ8N2E2 1590 aa19.4■□□□□ 0.7
VPS33B-208ENST00000574755 PRDM15P57071 1507 aaPredicted RBP19.4■□□□□ 0.7
VPS33B-208ENST00000574755 CEP152O94986 1710 aa19.38■□□□□ 0.69
VPS33B-208ENST00000574755 MROH1Q8NDA8 1641 aa19.38■□□□□ 0.69
VPS33B-208ENST00000574755 POGZQ7Z3K3 1410 aa19.38■□□□□ 0.69
VPS33B-208ENST00000574755 PTPRTO14522 1441 aa19.37■□□□□ 0.69
VPS33B-208ENST00000574755 NBPF1Q3BBV0 1214 aa19.36■□□□□ 0.69
VPS33B-208ENST00000574755 LAMC1P11047 1609 aa19.36■□□□□ 0.69
VPS33B-208ENST00000574755 CLTCL1P53675 1640 aa19.35■□□□□ 0.69
VPS33B-208ENST00000574755 GPRASP1Q5JY77 1395 aa19.35■□□□□ 0.69
VPS33B-208ENST00000574755 HECW2Q9P2P5 1572 aa19.34■□□□□ 0.69
VPS33B-208ENST00000574755 CCDC184Q52MB2 194 aa19.33■□□□□ 0.69
VPS33B-208ENST00000574755 MLH3Q9UHC1 1453 aa19.32■□□□□ 0.68
VPS33B-208ENST00000574755 HNRNPUQ00839 825 aaKnown RBP eCLIP19.32■□□□□ 0.68
VPS33B-208ENST00000574755 MRS2Q9HD23 443 aa19.32■□□□□ 0.68
VPS33B-208ENST00000574755 NEO1Q92859 1461 aa19.31■□□□□ 0.68
VPS33B-208ENST00000574755 EFCAB6Q5THR3 1501 aa19.3■□□□□ 0.68
VPS33B-208ENST00000574755 RNF17Q9BXT8 1623 aaKnown RBP19.3■□□□□ 0.68
VPS33B-208ENST00000574755 CYB5RLQ6IPT4 315 aa19.3■□□□□ 0.68
VPS33B-208ENST00000574755 MADDQ8WXG6 1647 aa19.3■□□□□ 0.68
VPS33B-208ENST00000574755 SUPT16HQ9Y5B9 1047 aaKnown RBP19.29■□□□□ 0.68
VPS33B-208ENST00000574755 CNGB1Q14028 1251 aaPredicted RBP19.28■□□□□ 0.68
VPS33B-208ENST00000574755 PPRC1Q5VV67 1664 aaKnown RBP19.28■□□□□ 0.68
VPS33B-208ENST00000574755 FRMPD1Q5SYB0 1578 aa19.27■□□□□ 0.68
VPS33B-208ENST00000574755 ABCA6Q8N139 1617 aa19.27■□□□□ 0.68
VPS33B-208ENST00000574755 LMTK2Q8IWU2 1503 aa19.26■□□□□ 0.67
VPS33B-208ENST00000574755 MAP3K4Q9Y6R4 1608 aa19.26■□□□□ 0.67
VPS33B-208ENST00000574755 FAM9BQ8IZU0 186 aa19.26■□□□□ 0.67
VPS33B-208ENST00000574755 RIMBP3CA6NJZ7 1639 aa19.25■□□□□ 0.67
VPS33B-208ENST00000574755 RIMBP3BA6NNM3 1639 aa19.25■□□□□ 0.67
VPS33B-208ENST00000574755 RIMBP3Q9UFD9 1639 aa19.25■□□□□ 0.67
VPS33B-208ENST00000574755 STAC3Q96MF2 364 aa19.25■□□□□ 0.67
VPS33B-208ENST00000574755 UGGT1Q9NYU2 1555 aa19.25■□□□□ 0.67
VPS33B-208ENST00000574755 RAPGEF3O95398 923 aa19.25■□□□□ 0.67
VPS33B-208ENST00000574755 KIF1BO60333 1816 aa19.24■□□□□ 0.67
VPS33B-208ENST00000574755 NEURL4Q96JN8 1562 aa19.23■□□□□ 0.67
VPS33B-208ENST00000574755 GGT6Q6P531 493 aa19.23■□□□□ 0.67
VPS33B-208ENST00000574755 COL17A1Q9UMD9 1497 aaPredicted RBP19.23■□□□□ 0.67
VPS33B-208ENST00000574755 TESK2Q96S53 571 aa19.22■□□□□ 0.67
VPS33B-208ENST00000574755 RICTORQ6R327 1708 aa19.21■□□□□ 0.67
VPS33B-208ENST00000574755 IQGAP1P46940 1657 aa19.2■□□□□ 0.66
VPS33B-208ENST00000574755 DISP3Q9P2K9 1392 aa19.2■□□□□ 0.66
VPS33B-208ENST00000574755 GLI2P10070 1586 aa19.19■□□□□ 0.66
VPS33B-208ENST00000574755 DIP2CQ9Y2E4 1556 aa19.18■□□□□ 0.66
VPS33B-208ENST00000574755 TMF1P82094 1093 aa19.18■□□□□ 0.66
VPS33B-208ENST00000574755 CFAP65Q6ZU64 1925 aaKnown RBP19.18■□□□□ 0.66
VPS33B-208ENST00000574755 MROH2AA6NES4 1674 aa19.17■□□□□ 0.66
VPS33B-208ENST00000574755 NPATQ14207 1427 aa19.17■□□□□ 0.66
VPS33B-208ENST00000574755 KIAA1210Q9ULL0 1709 aa19.17■□□□□ 0.66
VPS33B-208ENST00000574755 WASHC2CQ9Y4E1 1318 aa19.17■□□□□ 0.66
VPS33B-208ENST00000574755 IFT172Q9UG01 1749 aa19.15■□□□□ 0.66
VPS33B-208ENST00000574755 ABCC3O15438 1527 aa19.15■□□□□ 0.66
VPS33B-208ENST00000574755 MYOM2P54296 1465 aa19.15■□□□□ 0.66
VPS33B-208ENST00000574755 KTN1Q86UP2 1357 aaKnown RBP19.15■□□□□ 0.66
VPS33B-208ENST00000574755 SCAF11Q99590 1463 aaKnown RBP19.15■□□□□ 0.66
VPS33B-208ENST00000574755 NEFLP07196 543 aa19.14■□□□□ 0.66
VPS33B-208ENST00000574755 FKBP8Q14318 412 aa19.14■□□□□ 0.66
VPS33B-208ENST00000574755 CAMSAP1Q5T5Y3 1602 aa19.13■□□□□ 0.65
VPS33B-208ENST00000574755 DIP2BQ9P265 1576 aa19.13■□□□□ 0.65
VPS33B-208ENST00000574755 FAM69CQ0P6D2 419 aa19.12■□□□□ 0.65
VPS33B-208ENST00000574755 RALBP1Q15311 655 aa19.12■□□□□ 0.65
VPS33B-208ENST00000574755 ADGRB3O60242 1522 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms