RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 NISCHQ9Y2I1 1504 aa30.59■■■□□ 2.49
VPS33B-208ENST00000574755 CCDC180Q9P1Z9 1646 aa26.4■■□□□ 1.82
VPS33B-208ENST00000574755 ZCCHC6Q5VYS8 1495 aaKnown RBP25.79■■□□□ 1.72
VPS33B-208ENST00000574755 SHROOM4Q9ULL8 1493 aa25.49■■□□□ 1.67
VPS33B-208ENST00000574755 DCAF8L2P0C7V8 631 aa25.32■■□□□ 1.64
VPS33B-208ENST00000574755 DCAF1Q9Y4B6 1507 aa25.21■■□□□ 1.63
VPS33B-208ENST00000574755 SUPT5HO00267 1087 aaKnown RBP24.75■■□□□ 1.55
VPS33B-208ENST00000574755 MYO15BQ96JP2 1530 aa24.7■■□□□ 1.55
VPS33B-208ENST00000574755 ABCC9O60706 1549 aa24.69■■□□□ 1.54
VPS33B-208ENST00000574755 SCRIBQ14160 1630 aa24.49■■□□□ 1.51
VPS33B-208ENST00000574755 NACADO15069 1562 aa24.48■■□□□ 1.51
VPS33B-208ENST00000574755 RB1CC1Q8TDY2 1594 aa24.2■■□□□ 1.46
VPS33B-208ENST00000574755 RSF1Q96T23 1441 aaPredicted RBP23.94■■□□□ 1.42
VPS33B-208ENST00000574755 CHIC1Q5VXU3 224 aa23.85■■□□□ 1.41
VPS33B-208ENST00000574755 CECR2Q9BXF3 1484 aa23.8■■□□□ 1.4
VPS33B-208ENST00000574755 UNC13AQ9UPW8 1703 aa23.8■■□□□ 1.4
VPS33B-208ENST00000574755 MROH2BQ7Z745 1585 aa23.7■■□□□ 1.38
VPS33B-208ENST00000574755 BAZ1AQ9NRL2 1556 aaPredicted RBP23.59■■□□□ 1.37
VPS33B-208ENST00000574755 WIZO95785 1651 aa23.57■■□□□ 1.36
VPS33B-208ENST00000574755 BICRAQ9NZM4 1560 aa23.48■■□□□ 1.35
VPS33B-208ENST00000574755 SMARCA4P51532 1647 aa23.44■■□□□ 1.34
VPS33B-208ENST00000574755 PABPN1Q86U42 306 aaKnown RBP eCLIP23.42■■□□□ 1.34
VPS33B-208ENST00000574755 TOP2AP11388 1531 aaKnown RBP23.25■■□□□ 1.31
VPS33B-208ENST00000574755 TRIM41Q8WV44 630 aa23.18■■□□□ 1.3
VPS33B-208ENST00000574755 SMARCA2P51531 1590 aa23.08■■□□□ 1.29
VPS33B-208ENST00000574755 PEG3Q9GZU2 1588 aa23.06■■□□□ 1.28
VPS33B-208ENST00000574755 CCDC88BA6NC98 1476 aa23.06■■□□□ 1.28
VPS33B-208ENST00000574755 EIF4G1Q04637 1599 aaKnown RBP23.05■■□□□ 1.28
VPS33B-208ENST00000574755 LOC105371045A0A1W2PR82 267 aa23.04■■□□□ 1.28
VPS33B-208ENST00000574755 ATAD2BQ9ULI0 1458 aa22.92■■□□□ 1.26
VPS33B-208ENST00000574755 FAM9AQ8IZU1 332 aaPredicted RBP22.85■■□□□ 1.25
VPS33B-208ENST00000574755 BAZ1BQ9UIG0 1483 aaKnown RBP22.85■■□□□ 1.25
VPS33B-208ENST00000574755 ABCC8Q09428 1581 aa22.81■■□□□ 1.24
VPS33B-208ENST00000574755 HMGXB3Q12766 1538 aa22.61■■□□□ 1.21
VPS33B-208ENST00000574755 NCAPD3P42695 1498 aa22.6■■□□□ 1.21
VPS33B-208ENST00000574755 EHMT2Q96KQ7 1210 aa22.6■■□□□ 1.21
VPS33B-208ENST00000574755 WRNQ14191 1432 aaPredicted RBP eCLIP22.54■■□□□ 1.2
VPS33B-208ENST00000574755 PCGF6Q9BYE7 350 aa22.52■■□□□ 1.2
VPS33B-208ENST00000574755 SOGA1O94964 1423 aa22.46■■□□□ 1.19
VPS33B-208ENST00000574755 SYNJ1O43426 1573 aa22.44■■□□□ 1.18
VPS33B-208ENST00000574755 EEA1Q15075 1411 aa22.4■■□□□ 1.18
VPS33B-208ENST00000574755 RUSC2Q8N2Y8 1516 aa22.36■■□□□ 1.17
VPS33B-208ENST00000574755 CC2D2AQ9P2K1 1620 aa22.31■■□□□ 1.16
VPS33B-208ENST00000574755 CSRNP3Q8WYN3 585 aa22.31■■□□□ 1.16
VPS33B-208ENST00000574755 TRIM26Q12899 539 aaPredicted RBP22.31■■□□□ 1.16
VPS33B-208ENST00000574755 TOP2BQ02880 1626 aa22.27■■□□□ 1.16
VPS33B-208ENST00000574755 CFTRP13569 1480 aa22.26■■□□□ 1.15
VPS33B-208ENST00000574755 BIVM-ERCC5R4GMW8 1640 aa22.23■■□□□ 1.15
VPS33B-208ENST00000574755 HRCP23327 699 aa22.19■■□□□ 1.14
VPS33B-208ENST00000574755 PRDM2Q13029 1718 aa22.18■■□□□ 1.14
VPS33B-208ENST00000574755 TNIKQ9UKE5 1360 aa22.18■■□□□ 1.14
VPS33B-208ENST00000574755 GOLGA3Q08378 1498 aa22.17■■□□□ 1.14
VPS33B-208ENST00000574755 CEP162Q5TB80 1403 aa22.15■■□□□ 1.14
VPS33B-208ENST00000574755 UBTFP17480 764 aaKnown RBP22.14■■□□□ 1.14
VPS33B-208ENST00000574755 CUX1P39880 1505 aa22.12■■□□□ 1.13
VPS33B-208ENST00000574755 KIF21BO75037 1637 aa22.12■■□□□ 1.13
VPS33B-208ENST00000574755 CEP164Q9UPV0 1460 aa22.12■■□□□ 1.13
VPS33B-208ENST00000574755 CADPSQ9ULU8 1353 aa22.1■■□□□ 1.13
VPS33B-208ENST00000574755 PPARGC1BQ86YN6 1023 aaKnown RBP21.99■■□□□ 1.11
VPS33B-208ENST00000574755 RAPGEF2Q9Y4G8 1499 aa21.97■■□□□ 1.11
VPS33B-208ENST00000574755 KIF27Q86VH2 1401 aa21.91■■□□□ 1.1
VPS33B-208ENST00000574755 FANCD2Q9BXW9 1451 aa21.88■■□□□ 1.09
VPS33B-208ENST00000574755 ERICH3Q5RHP9 1530 aa21.87■■□□□ 1.09
VPS33B-208ENST00000574755 PRXQ9BXM0 1461 aa21.86■■□□□ 1.09
VPS33B-208ENST00000574755 CLIP1P30622 1438 aa21.86■■□□□ 1.09
VPS33B-208ENST00000574755 NESP48681 1621 aa21.83■■□□□ 1.08
VPS33B-208ENST00000574755 FGD5Q6ZNL6 1462 aa21.82■■□□□ 1.08
VPS33B-208ENST00000574755 CUX2O14529 1486 aa21.78■■□□□ 1.08
VPS33B-208ENST00000574755 LAMC3Q9Y6N6 1575 aa21.78■■□□□ 1.08
VPS33B-208ENST00000574755 TTBK1Q5TCY1 1321 aaPredicted RBP21.76■■□□□ 1.07
VPS33B-208ENST00000574755 DNMBPQ6XZF7 1577 aa21.74■■□□□ 1.07
VPS33B-208ENST00000574755 RANGAP1P46060 587 aaPredicted RBP21.74■■□□□ 1.07
VPS33B-208ENST00000574755 VPS8Q8N3P4 1428 aa21.72■■□□□ 1.07
VPS33B-208ENST00000574755 TOPBP1Q92547 1522 aa21.69■■□□□ 1.06
VPS33B-208ENST00000574755 DNAJC5BQ9UF47 199 aa21.68■■□□□ 1.06
VPS33B-208ENST00000574755 IGF1RP08069 1367 aa21.66■■□□□ 1.06
VPS33B-208ENST00000574755 POLA1P09884 1462 aaPredicted RBP21.63■■□□□ 1.05
VPS33B-208ENST00000574755 ZEB1P37275 1124 aaPredicted RBP21.62■■□□□ 1.05
VPS33B-208ENST00000574755 PDS5BQ9NTI5 1447 aa21.61■■□□□ 1.05
VPS33B-208ENST00000574755 RAD54L2Q9Y4B4 1467 aa21.61■■□□□ 1.05
VPS33B-208ENST00000574755 ABCA10Q8WWZ4 1543 aa21.59■■□□□ 1.05
VPS33B-208ENST00000574755 APLP2Q06481 763 aa21.58■■□□□ 1.05
VPS33B-208ENST00000574755 URB2Q14146 1524 aaKnown RBP21.58■■□□□ 1.05
VPS33B-208ENST00000574755 CARMIL1Q5VZK9 1371 aa21.58■■□□□ 1.05
VPS33B-208ENST00000574755 ARAP1Q96P48 1450 aa21.57■■□□□ 1.04
VPS33B-208ENST00000574755 KIF21AQ7Z4S6 1674 aa21.55■■□□□ 1.04
VPS33B-208ENST00000574755 WDR97A6NE52 1622 aa21.48■■□□□ 1.03
VPS33B-208ENST00000574755 ARHGAP35Q9NRY4 1499 aa21.48■■□□□ 1.03
VPS33B-208ENST00000574755 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.45■■□□□ 1.02
VPS33B-208ENST00000574755 CUL7Q14999 1698 aa21.44■■□□□ 1.02
VPS33B-208ENST00000574755 CCER1Q8TC90 406 aaPredicted RBP21.41■■□□□ 1.02
VPS33B-208ENST00000574755 ABCA5Q8WWZ7 1642 aa21.39■■□□□ 1.01
VPS33B-208ENST00000574755 TDRD9Q8NDG6 1382 aaKnown RBP21.37■■□□□ 1.01
VPS33B-208ENST00000574755 GAPVD1Q14C86 1478 aa21.34■■□□□ 1.01
VPS33B-208ENST00000574755 TARBP1Q13395 1621 aaKnown RBP21.32■■□□□ 1
VPS33B-208ENST00000574755 CTTNBP2Q8WZ74 1663 aa21.31■■□□□ 1
VPS33B-208ENST00000574755 MRC2Q9UBG0 1479 aa21.3■■□□□ 1
VPS33B-208ENST00000574755 KANK4Q5T7N3 995 aaPredicted RBP21.3■■□□□ 1
VPS33B-208ENST00000574755 HNRNPUL2Q1KMD3 747 aaKnown RBP21.28■■□□□ 1
VPS33B-208ENST00000574755 EFCAB5A4FU69 1503 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms