RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 CEP170Q5SW79 1584 aa22.86■■□□□ 1.25
VPS53-215ENST00000573028 UHRF1BP1Q6BDS2 1440 aa22.84■■□□□ 1.25
VPS53-215ENST00000573028 RCAN3Q9UKA8 241 aa22.84■■□□□ 1.25
VPS53-215ENST00000573028 RRP1P56182 461 aaKnown RBP22.84■■□□□ 1.25
VPS53-215ENST00000573028 BRD4O60885 1362 aaPredicted RBP22.83■■□□□ 1.24
VPS53-215ENST00000573028 MAGI1Q96QZ7 1491 aaPredicted RBP22.82■■□□□ 1.24
VPS53-215ENST00000573028 CDCA7LQ96GN5 454 aa22.81■■□□□ 1.24
VPS53-215ENST00000573028 ZBTB47Q9UFB7 747 aaPredicted RBP22.81■■□□□ 1.24
VPS53-215ENST00000573028 SYNJ2O15056 1496 aa22.81■■□□□ 1.24
VPS53-215ENST00000573028 ATP10BO94823 1461 aa22.8■■□□□ 1.24
VPS53-215ENST00000573028 NLRP13Q86W25 1043 aa22.8■■□□□ 1.24
VPS53-215ENST00000573028 CROCC2H7BZ55 1655 aa22.8■■□□□ 1.24
VPS53-215ENST00000573028 IPO9Q96P70 1041 aaKnown RBP22.8■■□□□ 1.24
VPS53-215ENST00000573028 KTN1Q86UP2 1357 aaKnown RBP22.8■■□□□ 1.24
VPS53-215ENST00000573028 LRPPRCP42704 1394 aaKnown RBP22.78■■□□□ 1.24
VPS53-215ENST00000573028 PLIN1O60240 522 aa22.78■■□□□ 1.24
VPS53-215ENST00000573028 CCDC144AA2RUR9 1427 aa22.76■■□□□ 1.23
VPS53-215ENST00000573028 CDC42BPAQ5VT25 1732 aa22.75■■□□□ 1.23
VPS53-215ENST00000573028 ADCY10Q96PN6 1610 aa22.74■■□□□ 1.23
VPS53-215ENST00000573028 ABCC10Q5T3U5 1492 aa22.74■■□□□ 1.23
VPS53-215ENST00000573028 ARHGEF12Q9NZN5 1544 aa22.74■■□□□ 1.23
VPS53-215ENST00000573028 MYT1LQ9UL68 1186 aa22.72■■□□□ 1.23
VPS53-215ENST00000573028 PANK3Q9H999 370 aa22.72■■□□□ 1.23
VPS53-215ENST00000573028 RTL5Q5HYW3 569 aaPredicted RBP22.71■■□□□ 1.23
VPS53-215ENST00000573028 SHANK2Q9UPX8 1470 aa22.71■■□□□ 1.23
VPS53-215ENST00000573028 SKAP1Q86WV1 359 aa22.7■■□□□ 1.22
VPS53-215ENST00000573028 PER1O15534 1290 aaPredicted RBP22.68■■□□□ 1.22
VPS53-215ENST00000573028 PTPRGP23470 1445 aa22.67■■□□□ 1.22
VPS53-215ENST00000573028 NUP160Q12769 1436 aa22.67■■□□□ 1.22
VPS53-215ENST00000573028 FAM135AQ9P2D6 1515 aa22.67■■□□□ 1.22
VPS53-215ENST00000573028 PRAG1Q86YV5 1406 aa22.67■■□□□ 1.22
VPS53-215ENST00000573028 PARD3Q8TEW0 1356 aa22.66■■□□□ 1.22
VPS53-215ENST00000573028 DISP3Q9P2K9 1392 aa22.66■■□□□ 1.22
VPS53-215ENST00000573028 PDE4AP27815 886 aa22.65■■□□□ 1.22
VPS53-215ENST00000573028 CCDC141Q6ZP82 1450 aa22.64■■□□□ 1.22
VPS53-215ENST00000573028 ABCA8O94911 1581 aa22.64■■□□□ 1.22
VPS53-215ENST00000573028 PDE3BQ13370 1112 aa22.64■■□□□ 1.22
VPS53-215ENST00000573028 LAS1LQ9Y4W2 734 aaKnown RBP22.64■■□□□ 1.21
VPS53-215ENST00000573028 TCERG1O14776 1098 aaKnown RBP22.63■■□□□ 1.21
VPS53-215ENST00000573028 TMF1P82094 1093 aa22.62■■□□□ 1.21
VPS53-215ENST00000573028 TESK2Q96S53 571 aa22.62■■□□□ 1.21
VPS53-215ENST00000573028 CRBNQ96SW2 442 aa22.62■■□□□ 1.21
VPS53-215ENST00000573028 KDM5DQ9BY66 1539 aa22.62■■□□□ 1.21
VPS53-215ENST00000573028 RSPH4AQ5TD94 716 aa22.58■■□□□ 1.21
VPS53-215ENST00000573028 A2MP01023 1474 aa22.58■■□□□ 1.2
VPS53-215ENST00000573028 ADAMTS8Q9UP79 889 aa22.57■■□□□ 1.2
VPS53-215ENST00000573028 PLA2R1Q13018 1463 aa22.57■■□□□ 1.2
VPS53-215ENST00000573028 SAMD9LQ8IVG5 1584 aa22.57■■□□□ 1.2
VPS53-215ENST00000573028 SYCP2Q9BX26 1530 aa22.56■■□□□ 1.2
VPS53-215ENST00000573028 PLEKHH2Q8IVE3 1493 aa22.56■■□□□ 1.2
VPS53-215ENST00000573028 ERBINQ96RT1 1412 aa22.56■■□□□ 1.2
VPS53-215ENST00000573028 ARHGAP5Q13017 1502 aa22.56■■□□□ 1.2
VPS53-215ENST00000573028 C20orf194Q5TEA3 1177 aa22.55■■□□□ 1.2
VPS53-215ENST00000573028 BACH2Q9BYV9 841 aa22.55■■□□□ 1.2
VPS53-215ENST00000573028 KNSTRNQ9Y448 316 aa22.54■■□□□ 1.2
VPS53-215ENST00000573028 WDR43Q15061 677 aaKnown RBP eCLIP22.53■■□□□ 1.2
VPS53-215ENST00000573028 ARHGEF5Q12774 1597 aa22.53■■□□□ 1.2
VPS53-215ENST00000573028 E9PCH4 1651 aa22.53■■□□□ 1.2
VPS53-215ENST00000573028 TRPM1Q7Z4N2 1603 aa22.53■■□□□ 1.2
VPS53-215ENST00000573028 COL17A1Q9UMD9 1497 aaPredicted RBP22.52■■□□□ 1.2
VPS53-215ENST00000573028 NEFMP07197 916 aa22.49■■□□□ 1.19
VPS53-215ENST00000573028 GPRASP1Q5JY77 1395 aa22.49■■□□□ 1.19
VPS53-215ENST00000573028 WASHC2CQ9Y4E1 1318 aa22.48■■□□□ 1.19
VPS53-215ENST00000573028 CDC42BPBQ9Y5S2 1711 aa22.48■■□□□ 1.19
VPS53-215ENST00000573028 MS4A1P11836 297 aa22.46■■□□□ 1.19
VPS53-215ENST00000573028 CCDC146Q8IYE0 955 aa22.46■■□□□ 1.19
VPS53-215ENST00000573028 PPP2R1AP30153 589 aa22.45■■□□□ 1.18
VPS53-215ENST00000573028 PREX2Q70Z35 1606 aa22.43■■□□□ 1.18
VPS53-215ENST00000573028 BLMP54132 1417 aaPredicted RBP22.43■■□□□ 1.18
VPS53-215ENST00000573028 SLC4A3P48751 1232 aa22.42■■□□□ 1.18
VPS53-215ENST00000573028 TTC37Q6PGP7 1564 aa22.41■■□□□ 1.18
VPS53-215ENST00000573028 PRDM15P57071 1507 aaPredicted RBP22.41■■□□□ 1.18
VPS53-215ENST00000573028 PLEKHH1Q9ULM0 1364 aa22.4■■□□□ 1.18
VPS53-215ENST00000573028 RGS3P49796 1198 aa22.39■■□□□ 1.17
VPS53-215ENST00000573028 GOLGA2Q08379 1002 aa22.39■■□□□ 1.17
VPS53-215ENST00000573028 DUSP27Q5VZP5 1158 aa22.38■■□□□ 1.17
VPS53-215ENST00000573028 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.37■■□□□ 1.17
VPS53-215ENST00000573028 MAGI2Q86UL8 1455 aa22.37■■□□□ 1.17
VPS53-215ENST00000573028 EFCAB2Q5VUJ9 269 aa22.37■■□□□ 1.17
VPS53-215ENST00000573028 AFAP1Q8N556 730 aa22.36■■□□□ 1.17
VPS53-215ENST00000573028 AMER1Q5JTC6 1135 aaPredicted RBP22.36■■□□□ 1.17
VPS53-215ENST00000573028 DAXXQ9UER7 740 aaPredicted RBP22.36■■□□□ 1.17
VPS53-215ENST00000573028 UNC13BO14795 1591 aa22.34■■□□□ 1.17
VPS53-215ENST00000573028 ZMYM4Q5VZL5 1548 aa22.34■■□□□ 1.17
VPS53-215ENST00000573028 APAF1O14727 1248 aa22.34■■□□□ 1.17
VPS53-215ENST00000573028 MYO5CQ9NQX4 1742 aa22.33■■□□□ 1.16
VPS53-215ENST00000573028 CDCA8Q53HL2 280 aa22.33■■□□□ 1.16
VPS53-215ENST00000573028 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.32■■□□□ 1.16
VPS53-215ENST00000573028 SPAG9O60271 1321 aaKnown RBP22.32■■□□□ 1.16
VPS53-215ENST00000573028 WDR7Q9Y4E6 1490 aa22.31■■□□□ 1.16
VPS53-215ENST00000573028 RTN4Q9NQC3 1192 aaKnown RBP22.31■■□□□ 1.16
VPS53-215ENST00000573028 EIF2AK4Q9P2K8 1649 aaKnown RBP22.31■■□□□ 1.16
VPS53-215ENST00000573028 DDRGK1Q96HY6 314 aa22.31■■□□□ 1.16
VPS53-215ENST00000573028 PPM1GO15355 546 aaPredicted RBP22.3■■□□□ 1.16
VPS53-215ENST00000573028 CENPQQ7L2Z9 268 aaPredicted RBP22.3■■□□□ 1.16
VPS53-215ENST00000573028 DUOX2Q9NRD8 1548 aa22.3■■□□□ 1.16
VPS53-215ENST00000573028 SPINK5Q9NQ38 1064 aaPredicted RBP22.3■■□□□ 1.16
VPS53-215ENST00000573028 IQGAP3Q86VI3 1631 aa22.29■■□□□ 1.16
VPS53-215ENST00000573028 TRAPPC8Q9Y2L5 1435 aa22.29■■□□□ 1.16
VPS53-215ENST00000573028 BCAR3O75815 825 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms