RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 DEPDC5O75140 1603 aa29.99■■■□□ 2.39
CLK3-227ENST00000570296 MED14O60244 1454 aa29.99■■■□□ 2.39
CLK3-227ENST00000570296 RNF17Q9BXT8 1623 aaKnown RBP29.97■■■□□ 2.39
CLK3-227ENST00000570296 RGS17Q9UGC6 210 aaPredicted RBP29.97■■■□□ 2.39
CLK3-227ENST00000570296 NPHP4O75161 1426 aaPredicted RBP29.96■■■□□ 2.39
CLK3-227ENST00000570296 SYNMO15061 1565 aa29.94■■■□□ 2.38
CLK3-227ENST00000570296 PZPP20742 1482 aa29.93■■■□□ 2.38
CLK3-227ENST00000570296 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.92■■■□□ 2.38
CLK3-227ENST00000570296 THEMISQ8N1K5 641 aaPredicted RBP29.92■■■□□ 2.38
CLK3-227ENST00000570296 IQGAP1P46940 1657 aa29.91■■■□□ 2.38
CLK3-227ENST00000570296 LRRC7Q96NW7 1537 aa29.91■■■□□ 2.38
CLK3-227ENST00000570296 FAM135AQ9P2D6 1515 aa29.91■■■□□ 2.38
CLK3-227ENST00000570296 STRCP1A6NGW2 1772 aa29.9■■■□□ 2.38
CLK3-227ENST00000570296 EHMT2Q96KQ7 1210 aa29.89■■■□□ 2.38
CLK3-227ENST00000570296 SENP3Q9H4L4 574 aaPredicted RBP29.89■■■□□ 2.38
CLK3-227ENST00000570296 NLRP1Q9C000 1473 aa29.88■■■□□ 2.37
CLK3-227ENST00000570296 FBXO31Q5XUX0 539 aaPredicted RBP29.88■■■□□ 2.37
CLK3-227ENST00000570296 CFDP1Q9UEE9 299 aaPredicted RBP29.87■■■□□ 2.37
CLK3-227ENST00000570296 KDM5DQ9BY66 1539 aa29.86■■■□□ 2.37
CLK3-227ENST00000570296 UGGT1Q9NYU2 1555 aa29.86■■■□□ 2.37
CLK3-227ENST00000570296 FYCO1Q9BQS8 1478 aa29.84■■■□□ 2.37
CLK3-227ENST00000570296 MIA2Q96PC5 1412 aa29.82■■■□□ 2.36
CLK3-227ENST00000570296 DHX29Q7Z478 1369 aaKnown RBP29.82■■■□□ 2.36
CLK3-227ENST00000570296 RTEL1-TNFRSF6BF6WH68 1400 aa29.81■■■□□ 2.36
CLK3-227ENST00000570296 CCNB3Q8WWL7 1395 aa29.79■■■□□ 2.36
CLK3-227ENST00000570296 POTEAQ6S8J7 498 aa29.75■■■□□ 2.35
CLK3-227ENST00000570296 MBD5Q9P267 1494 aa29.74■■■□□ 2.35
CLK3-227ENST00000570296 WASHC2CQ9Y4E1 1318 aa29.73■■■□□ 2.35
CLK3-227ENST00000570296 KIF3BO15066 747 aa29.73■■■□□ 2.35
CLK3-227ENST00000570296 ZC3H13Q5T200 1668 aaKnown RBP29.72■■■□□ 2.35
CLK3-227ENST00000570296 XIRP1Q702N8 1843 aaKnown RBP29.67■■■□□ 2.34
CLK3-227ENST00000570296 FAM135BQ49AJ0 1406 aa29.66■■■□□ 2.34
CLK3-227ENST00000570296 ZNF644Q9H582 1327 aaPredicted RBP29.65■■■□□ 2.34
CLK3-227ENST00000570296 SETD1AO15047 1707 aaKnown RBP29.63■■■□□ 2.33
CLK3-227ENST00000570296 TIAM1Q13009 1591 aa29.63■■■□□ 2.33
CLK3-227ENST00000570296 MTUS2Q5JR59 1369 aa29.59■■■□□ 2.33
CLK3-227ENST00000570296 SCAF11Q99590 1463 aaKnown RBP29.57■■■□□ 2.32
CLK3-227ENST00000570296 CCDC141Q6ZP82 1450 aa29.56■■■□□ 2.32
CLK3-227ENST00000570296 UBR1Q8IWV7 1749 aa29.56■■■□□ 2.32
CLK3-227ENST00000570296 ERVK-7P63135 1459 aa29.53■■■□□ 2.32
CLK3-227ENST00000570296 ABCC3O15438 1527 aa29.51■■■□□ 2.32
CLK3-227ENST00000570296 ROBO1Q9Y6N7 1651 aa29.51■■■□□ 2.31
CLK3-227ENST00000570296 SLIT1O75093 1534 aa29.49■■■□□ 2.31
CLK3-227ENST00000570296 ARHGAP23Q9P227 1491 aa29.48■■■□□ 2.31
CLK3-227ENST00000570296 RSPH4AQ5TD94 716 aa29.48■■■□□ 2.31
CLK3-227ENST00000570296 EHBP1L1Q8N3D4 1523 aa29.46■■■□□ 2.31
CLK3-227ENST00000570296 NCOA2Q15596 1464 aa29.46■■■□□ 2.31
CLK3-227ENST00000570296 LRRC9Q6ZRR7 1453 aa29.44■■■□□ 2.3
CLK3-227ENST00000570296 LTKP29376 864 aa29.44■■■□□ 2.3
CLK3-227ENST00000570296 TXNDC2Q86VQ3 553 aa29.43■■■□□ 2.3
CLK3-227ENST00000570296 CEP162Q5TB80 1403 aa29.43■■■□□ 2.3
CLK3-227ENST00000570296 CAMSAP2Q08AD1 1489 aa29.42■■■□□ 2.3
CLK3-227ENST00000570296 TMEM94Q12767 1356 aa29.41■■■□□ 2.3
CLK3-227ENST00000570296 CFAP65Q6ZU64 1925 aaKnown RBP29.41■■■□□ 2.3
CLK3-227ENST00000570296 UPF1Q92900 1129 aaKnown RBP eCLIP29.4■■■□□ 2.3
CLK3-227ENST00000570296 ARHGEF5Q12774 1597 aa29.39■■■□□ 2.29
CLK3-227ENST00000570296 EIF2AK4Q9P2K8 1649 aaKnown RBP29.38■■■□□ 2.29
CLK3-227ENST00000570296 MAP3K1Q13233 1512 aa29.37■■■□□ 2.29
CLK3-227ENST00000570296 EID1Q9Y6B2 187 aa29.37■■■□□ 2.29
CLK3-227ENST00000570296 PHLPP1O60346 1717 aa29.36■■■□□ 2.29
CLK3-227ENST00000570296 JCADQ9P266 1359 aa29.36■■■□□ 2.29
CLK3-227ENST00000570296 MROH1Q8NDA8 1641 aa29.34■■■□□ 2.29
CLK3-227ENST00000570296 CEP152O94986 1710 aa29.34■■■□□ 2.29
CLK3-227ENST00000570296 TSPY4P0CV99 314 aa29.33■■■□□ 2.29
CLK3-227ENST00000570296 TSPY10P0CW01 314 aa29.33■■■□□ 2.29
CLK3-227ENST00000570296 CHIC1Q5VXU3 224 aa29.33■■■□□ 2.29
CLK3-227ENST00000570296 KCNA6P17658 529 aa29.31■■■□□ 2.28
CLK3-227ENST00000570296 TMEM2Q9UHN6 1383 aa29.28■■■□□ 2.28
CLK3-227ENST00000570296 PRDM15P57071 1507 aaPredicted RBP29.28■■■□□ 2.28
CLK3-227ENST00000570296 MAST1Q9Y2H9 1570 aa29.27■■■□□ 2.28
CLK3-227ENST00000570296 PROSER2Q86WR7 435 aaPredicted RBP29.27■■■□□ 2.28
CLK3-227ENST00000570296 NKTRP30414 1462 aaKnown RBP29.26■■■□□ 2.27
CLK3-227ENST00000570296 ZNF772Q68DY9 489 aaPredicted RBP29.26■■■□□ 2.27
CLK3-227ENST00000570296 SRCAPQ6ZRS2 3230 aa29.26■■■□□ 2.27
CLK3-227ENST00000570296 ARHGAP31Q2M1Z3 1444 aa29.25■■■□□ 2.27
CLK3-227ENST00000570296 PIK3C2BO00750 1634 aa29.24■■■□□ 2.27
CLK3-227ENST00000570296 KDM5AP29375 1690 aaKnown RBP29.24■■■□□ 2.27
CLK3-227ENST00000570296 MSH6P52701 1360 aa29.24■■■□□ 2.27
CLK3-227ENST00000570296 COL16A1Q07092 1604 aaPredicted RBP29.23■■■□□ 2.27
CLK3-227ENST00000570296 NWD1Q149M9 1564 aa29.23■■■□□ 2.27
CLK3-227ENST00000570296 SLAIN2Q9P270 581 aa29.22■■■□□ 2.27
CLK3-227ENST00000570296 TET3O43151 1660 aa29.21■■■□□ 2.27
CLK3-227ENST00000570296 SPATA31A6Q5VVP1 1343 aa29.21■■■□□ 2.27
CLK3-227ENST00000570296 LRP6O75581 1613 aa29.21■■■□□ 2.27
CLK3-227ENST00000570296 TRIM52Q96A61 297 aa29.21■■■□□ 2.27
CLK3-227ENST00000570296 FGD6Q6ZV73 1430 aa29.2■■■□□ 2.26
CLK3-227ENST00000570296 RBM33Q96EV2 1170 aaKnown RBP29.18■■■□□ 2.26
CLK3-227ENST00000570296 EFCAB6Q5THR3 1501 aa29.17■■■□□ 2.26
CLK3-227ENST00000570296 MEX3CQ5U5Q3 659 aaKnown RBP29.16■■■□□ 2.26
CLK3-227ENST00000570296 CDK12Q9NYV4 1490 aaPredicted RBP29.16■■■□□ 2.26
CLK3-227ENST00000570296 SLC26A8Q96RN1 970 aa29.14■■■□□ 2.26
CLK3-227ENST00000570296 STAG3Q9UJ98 1225 aa29.14■■■□□ 2.26
CLK3-227ENST00000570296 SHPRHQ149N8 1683 aa29.12■■■□□ 2.25
CLK3-227ENST00000570296 DUOX2Q9NRD8 1548 aa29.12■■■□□ 2.25
CLK3-227ENST00000570296 RXRBP28702 533 aa29.12■■■□□ 2.25
CLK3-227ENST00000570296 AHDC1Q5TGY3 1603 aaPredicted RBP29.06■■■□□ 2.24
CLK3-227ENST00000570296 CHD2O14647 1828 aaKnown RBP29.04■■■□□ 2.24
CLK3-227ENST00000570296 NCOA3Q9Y6Q9 1424 aa29.02■■■□□ 2.24
CLK3-227ENST00000570296 IDI1Q13907 227 aa29.01■■■□□ 2.23
CLK3-227ENST00000570296 ERBINQ96RT1 1412 aa29■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms