RNA–Protein interactions for RNA: ENST00000570273.5

HERPUD1-219, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 1,425 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-219ENST00000570273 KDM5DQ9BY66 1539 aa22.76■■□□□ 1.23
HERPUD1-219ENST00000570273 NUP155O75694 1391 aa22.75■■□□□ 1.23
HERPUD1-219ENST00000570273 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.74■■□□□ 1.235e-8■□□□□ 9.6
HERPUD1-219ENST00000570273 DEPDC5O75140 1603 aa22.73■■□□□ 1.23
HERPUD1-219ENST00000570273 PZPP20742 1482 aa22.73■■□□□ 1.23
HERPUD1-219ENST00000570273 BCORL1Q5H9F3 1711 aa22.73■■□□□ 1.23
HERPUD1-219ENST00000570273 RNF17Q9BXT8 1623 aaKnown RBP22.72■■□□□ 1.23
HERPUD1-219ENST00000570273 PRDM15P57071 1507 aaPredicted RBP22.71■■□□□ 1.23
HERPUD1-219ENST00000570273 AGLP35573 1532 aa22.7■■□□□ 1.23
HERPUD1-219ENST00000570273 SIGLEC1Q9BZZ2 1709 aa22.7■■□□□ 1.22
HERPUD1-219ENST00000570273 MROH1Q8NDA8 1641 aa22.7■■□□□ 1.22
HERPUD1-219ENST00000570273 KANK1Q14678 1352 aa22.69■■□□□ 1.22
HERPUD1-219ENST00000570273 IQGAP3Q86VI3 1631 aa22.69■■□□□ 1.22
HERPUD1-219ENST00000570273 FAM135AQ9P2D6 1515 aa22.69■■□□□ 1.22
HERPUD1-219ENST00000570273 MPHOSPH9Q99550 1183 aa22.68■■□□□ 1.22
HERPUD1-219ENST00000570273 SLC4A1APQ9BWU0 796 aaKnown RBP22.68■■□□□ 1.22
HERPUD1-219ENST00000570273 GGT6Q6P531 493 aa22.65■■□□□ 1.22
HERPUD1-219ENST00000570273 VWDEQ8N2E2 1590 aa22.65■■□□□ 1.22
HERPUD1-219ENST00000570273 ARID4BQ4LE39 1312 aaPredicted RBP22.62■■□□□ 1.21
HERPUD1-219ENST00000570273 KDM4FA0A1W2PPD8 638 aa22.6■■□□□ 1.21
HERPUD1-219ENST00000570273 PKD2Q13563 968 aa22.6■■□□□ 1.21
HERPUD1-219ENST00000570273 CLSPNQ9HAW4 1339 aa22.6■■□□□ 1.21
HERPUD1-219ENST00000570273 ABCC3O15438 1527 aa22.58■■□□□ 1.21
HERPUD1-219ENST00000570273 LMTK2Q8IWU2 1503 aa22.58■■□□□ 1.21
HERPUD1-219ENST00000570273 TET3O43151 1660 aa22.58■■□□□ 1.2
HERPUD1-219ENST00000570273 ADAMTSL3P82987 1691 aa22.58■■□□□ 1.2
HERPUD1-219ENST00000570273 CEP152O94986 1710 aa22.57■■□□□ 1.2
HERPUD1-219ENST00000570273 MLECQ14165 292 aa22.57■■□□□ 1.2
HERPUD1-219ENST00000570273 FOXD1Q16676 465 aa22.57■■□□□ 1.2
HERPUD1-219ENST00000570273 WASHC2CQ9Y4E1 1318 aa22.56■■□□□ 1.2
HERPUD1-219ENST00000570273 ZC3H13Q5T200 1668 aaKnown RBP22.56■■□□□ 1.2
HERPUD1-219ENST00000570273 EFCAB6Q5THR3 1501 aa22.55■■□□□ 1.2
HERPUD1-219ENST00000570273 PPP6R1Q9UPN7 881 aa22.52■■□□□ 1.2
HERPUD1-219ENST00000570273 CAMSAP1Q5T5Y3 1602 aa22.51■■□□□ 1.19
HERPUD1-219ENST00000570273 E9PCH4 1651 aa22.5■■□□□ 1.19
HERPUD1-219ENST00000570273 ANKRD30BQ9BXX2 1392 aa22.5■■□□□ 1.19
HERPUD1-219ENST00000570273 MADDQ8WXG6 1647 aa22.48■■□□□ 1.19
HERPUD1-219ENST00000570273 ESF1Q9H501 851 aaKnown RBP22.47■■□□□ 1.19
HERPUD1-219ENST00000570273 CLTCQ00610 1675 aaKnown RBP22.46■■□□□ 1.19
HERPUD1-219ENST00000570273 RPRD2Q5VT52 1461 aaKnown RBP22.45■■□□□ 1.18
HERPUD1-219ENST00000570273 SIN3AQ96ST3 1273 aa22.45■■□□□ 1.18
HERPUD1-219ENST00000570273 NPATQ14207 1427 aa22.45■■□□□ 1.18
HERPUD1-219ENST00000570273 ARHGAP31Q2M1Z3 1444 aa22.44■■□□□ 1.18
HERPUD1-219ENST00000570273 CNTLNQ9NXG0 1405 aa22.43■■□□□ 1.18
HERPUD1-219ENST00000570273 NEUROD1Q13562 356 aa22.43■■□□□ 1.18
HERPUD1-219ENST00000570273 FER1L4A9Z1Z3 1794 aa22.43■■□□□ 1.18
HERPUD1-219ENST00000570273 ZEB1P37275 1124 aaPredicted RBP22.42■■□□□ 1.18
HERPUD1-219ENST00000570273 PLA2R1Q13018 1463 aa22.41■■□□□ 1.18
HERPUD1-219ENST00000570273 PTPRTO14522 1441 aa22.41■■□□□ 1.18
HERPUD1-219ENST00000570273 SPHKAPQ2M3C7 1700 aa22.41■■□□□ 1.18
HERPUD1-219ENST00000570273 TRPM2O94759 1503 aa22.4■■□□□ 1.18
HERPUD1-219ENST00000570273 RIMS1Q86UR5 1692 aaKnown RBP22.39■■□□□ 1.18
HERPUD1-219ENST00000570273 CCDC144AA2RUR9 1427 aa22.39■■□□□ 1.18
HERPUD1-219ENST00000570273 PTPRMP28827 1452 aa22.37■■□□□ 1.17
HERPUD1-219ENST00000570273 MROH2AA6NES4 1674 aa22.36■■□□□ 1.17
HERPUD1-219ENST00000570273 ERVK-7P63135 1459 aa22.34■■□□□ 1.17
HERPUD1-219ENST00000570273 NOS1P29475 1434 aa22.34■■□□□ 1.17
HERPUD1-219ENST00000570273 ZMYM3Q14202 1370 aa22.34■■□□□ 1.17
HERPUD1-219ENST00000570273 TONSLQ96HA7 1378 aa22.33■■□□□ 1.17
HERPUD1-219ENST00000570273 PREX1Q8TCU6 1659 aa22.33■■□□□ 1.17
HERPUD1-219ENST00000570273 CLTCL1P53675 1640 aa22.32■■□□□ 1.16
HERPUD1-219ENST00000570273 SYNMO15061 1565 aa22.31■■□□□ 1.16
HERPUD1-219ENST00000570273 UGGT1Q9NYU2 1555 aa22.31■■□□□ 1.16
HERPUD1-219ENST00000570273 FBXO31Q5XUX0 539 aaPredicted RBP22.3■■□□□ 1.16
HERPUD1-219ENST00000570273 AEBP2Q6ZN18 517 aaPredicted RBP22.3■■□□□ 1.16
HERPUD1-219ENST00000570273 SPATA31D1Q6ZQQ2 1576 aa22.29■■□□□ 1.16
HERPUD1-219ENST00000570273 CFAP65Q6ZU64 1925 aaKnown RBP22.28■■□□□ 1.16
HERPUD1-219ENST00000570273 TIMELESSQ9UNS1 1208 aa22.27■■□□□ 1.16
HERPUD1-219ENST00000570273 C3P01024 1663 aa22.26■■□□□ 1.15
HERPUD1-219ENST00000570273 PIK3C2BO00750 1634 aa22.24■■□□□ 1.15
HERPUD1-219ENST00000570273 TNRQ92752 1358 aa22.23■■□□□ 1.15
HERPUD1-219ENST00000570273 CEBPAP49715 358 aaPredicted RBP22.23■■□□□ 1.15
HERPUD1-219ENST00000570273 PLPPR3Q6T4P5 718 aa22.23■■□□□ 1.15
HERPUD1-219ENST00000570273 SLC52A1Q9NWF4 448 aa22.22■■□□□ 1.15
HERPUD1-219ENST00000570273 SPATA31E1Q6ZUB1 1445 aa22.22■■□□□ 1.15
HERPUD1-219ENST00000570273 L3MBTL2Q969R5 705 aa22.21■■□□□ 1.15
HERPUD1-219ENST00000570273 ADGRB3O60242 1522 aa22.2■■□□□ 1.14
HERPUD1-219ENST00000570273 CHGAP10645 457 aaKnown RBP22.19■■□□□ 1.14
HERPUD1-219ENST00000570273 KIF1BO60333 1816 aa22.18■■□□□ 1.14
HERPUD1-219ENST00000570273 RGL3Q3MIN7 710 aa22.18■■□□□ 1.14
HERPUD1-219ENST00000570273 NEURL4Q96JN8 1562 aa22.18■■□□□ 1.14
HERPUD1-219ENST00000570273 IDI1Q13907 227 aa22.17■■□□□ 1.14
HERPUD1-219ENST00000570273 SETD1BQ9UPS6 1966 aaKnown RBP22.13■■□□□ 1.13
HERPUD1-219ENST00000570273 NLRP1Q9C000 1473 aa22.13■■□□□ 1.13
HERPUD1-219ENST00000570273 PPP1R15AO75807 674 aaPredicted RBP22.13■■□□□ 1.13
HERPUD1-219ENST00000570273 ZNF326Q5BKZ1 582 aaKnown RBP22.12■■□□□ 1.13
HERPUD1-219ENST00000570273 STAG3Q9UJ98 1225 aa22.12■■□□□ 1.13
HERPUD1-219ENST00000570273 DCAF11Q8TEB1 546 aa22.11■■□□□ 1.13
HERPUD1-219ENST00000570273 TMEM131LA2VDJ0 1609 aa22.11■■□□□ 1.13
HERPUD1-219ENST00000570273 LMTK3Q96Q04 1460 aa22.1■■□□□ 1.13
HERPUD1-219ENST00000570273 MYO3AQ8NEV4 1616 aa22.09■■□□□ 1.13
HERPUD1-219ENST00000570273 KDM2AQ9Y2K7 1162 aa22.09■■□□□ 1.13
HERPUD1-219ENST00000570273 A2ML1A8K2U0 1454 aa22.07■■□□□ 1.12
HERPUD1-219ENST00000570273 RPGRIP1LQ68CZ1 1315 aa22.05■■□□□ 1.12
HERPUD1-219ENST00000570273 UHRF1BP1Q6BDS2 1440 aa22.05■■□□□ 1.12
HERPUD1-219ENST00000570273 MYOM2P54296 1465 aa22.04■■□□□ 1.12
HERPUD1-219ENST00000570273 MYO5BQ9ULV0 1848 aa22.04■■□□□ 1.12
HERPUD1-219ENST00000570273 NEXMIFQ5QGS0 1516 aa22.04■■□□□ 1.12
HERPUD1-219ENST00000570273 IFT172Q9UG01 1749 aa22.04■■□□□ 1.12
HERPUD1-219ENST00000570273 KDM5AP29375 1690 aaKnown RBP22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms