RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 MROH2AA6NES4 1674 aa22.23■■□□□ 1.15
COMMD4-225ENST00000569245 SETD1BQ9UPS6 1966 aaKnown RBP22.21■■□□□ 1.15
COMMD4-225ENST00000569245 ANKRD30AQ9BXX3 1397 aa22.2■■□□□ 1.14
COMMD4-225ENST00000569245 PTPRKQ15262 1439 aa22.2■■□□□ 1.14
COMMD4-225ENST00000569245 DUOX2Q9NRD8 1548 aa22.2■■□□□ 1.14
COMMD4-225ENST00000569245 DNMT1P26358 1616 aaKnown RBP22.19■■□□□ 1.14
COMMD4-225ENST00000569245 KDM5DQ9BY66 1539 aa22.18■■□□□ 1.14
COMMD4-225ENST00000569245 FBXO31Q5XUX0 539 aaPredicted RBP22.17■■□□□ 1.14
COMMD4-225ENST00000569245 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.16■■□□□ 1.14
COMMD4-225ENST00000569245 CROCC2H7BZ55 1655 aa22.16■■□□□ 1.14
COMMD4-225ENST00000569245 DMRT2Q9Y5R5 561 aa22.15■■□□□ 1.14
COMMD4-225ENST00000569245 FAM135AQ9P2D6 1515 aa22.14■■□□□ 1.13
COMMD4-225ENST00000569245 ERBINQ96RT1 1412 aa22.14■■□□□ 1.13
COMMD4-225ENST00000569245 NCOA1Q15788 1441 aa22.13■■□□□ 1.13
COMMD4-225ENST00000569245 EIF2AK4Q9P2K8 1649 aaKnown RBP22.13■■□□□ 1.13
COMMD4-225ENST00000569245 ITGAEP38570 1179 aa22.12■■□□□ 1.13
COMMD4-225ENST00000569245 PZPP20742 1482 aa22.11■■□□□ 1.13
COMMD4-225ENST00000569245 RNF17Q9BXT8 1623 aaKnown RBP22.11■■□□□ 1.13
COMMD4-225ENST00000569245 TNRQ92752 1358 aa22.11■■□□□ 1.13
COMMD4-225ENST00000569245 ABCC3O15438 1527 aa22.09■■□□□ 1.13
COMMD4-225ENST00000569245 KANK1Q14678 1352 aa22.08■■□□□ 1.12
COMMD4-225ENST00000569245 ADGRL2O95490 1459 aa22.06■■□□□ 1.12
COMMD4-225ENST00000569245 MYO3AQ8NEV4 1616 aa22.06■■□□□ 1.12
COMMD4-225ENST00000569245 ILDR1Q86SU0 546 aaPredicted RBP22.04■■□□□ 1.12
COMMD4-225ENST00000569245 CAMSAP1Q5T5Y3 1602 aa22.04■■□□□ 1.12
COMMD4-225ENST00000569245 NCKAP5LQ9HCH0 1330 aa22.04■■□□□ 1.12
COMMD4-225ENST00000569245 CEP170BQ9Y4F5 1589 aaPredicted RBP22.04■■□□□ 1.12
COMMD4-225ENST00000569245 MROH1Q8NDA8 1641 aa22.03■■□□□ 1.12
COMMD4-225ENST00000569245 A2ML1A8K2U0 1454 aa22.03■■□□□ 1.12
COMMD4-225ENST00000569245 ANKRD50Q9ULJ7 1429 aa22.02■■□□□ 1.12
COMMD4-225ENST00000569245 ZC3H13Q5T200 1668 aaKnown RBP22.01■■□□□ 1.11
COMMD4-225ENST00000569245 STRCQ7RTU9 1775 aa22.01■■□□□ 1.11
COMMD4-225ENST00000569245 PKD2Q13563 968 aa22■■□□□ 1.11
COMMD4-225ENST00000569245 PRDM15P57071 1507 aaPredicted RBP22■■□□□ 1.11
COMMD4-225ENST00000569245 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.99■■□□□ 1.11
COMMD4-225ENST00000569245 PTPRTO14522 1441 aa21.99■■□□□ 1.11
COMMD4-225ENST00000569245 THEMISQ8N1K5 641 aaPredicted RBP21.98■■□□□ 1.11
COMMD4-225ENST00000569245 ROCK1Q13464 1354 aa21.98■■□□□ 1.11
COMMD4-225ENST00000569245 ZNF142P52746 1687 aaPredicted RBP21.98■■□□□ 1.11
COMMD4-225ENST00000569245 NLRP1Q9C000 1473 aa21.97■■□□□ 1.11
COMMD4-225ENST00000569245 CEP152O94986 1710 aa21.97■■□□□ 1.11
COMMD4-225ENST00000569245 ERVK-7P63135 1459 aa21.96■■□□□ 1.11
COMMD4-225ENST00000569245 PLA2R1Q13018 1463 aa21.96■■□□□ 1.11
COMMD4-225ENST00000569245 CERKQ8TCT0 537 aa21.95■■□□□ 1.1
COMMD4-225ENST00000569245 ARHGAP31Q2M1Z3 1444 aa21.95■■□□□ 1.1
COMMD4-225ENST00000569245 DEPDC5O75140 1603 aa21.95■■□□□ 1.1
COMMD4-225ENST00000569245 SPATA31D1Q6ZQQ2 1576 aa21.93■■□□□ 1.1
COMMD4-225ENST00000569245 ANKLE2Q86XL3 938 aa21.93■■□□□ 1.1
COMMD4-225ENST00000569245 RRBP1Q9P2E9 1410 aaKnown RBP21.92■■□□□ 1.1
COMMD4-225ENST00000569245 FBXO41Q8TF61 875 aa21.92■■□□□ 1.1
COMMD4-225ENST00000569245 UGGT1Q9NYU2 1555 aa21.91■■□□□ 1.1
COMMD4-225ENST00000569245 LMTK2Q8IWU2 1503 aa21.9■■□□□ 1.1
COMMD4-225ENST00000569245 STAG3Q9UJ98 1225 aa21.89■■□□□ 1.09
COMMD4-225ENST00000569245 VWDEQ8N2E2 1590 aa21.88■■□□□ 1.09
COMMD4-225ENST00000569245 CFAP65Q6ZU64 1925 aaKnown RBP21.86■■□□□ 1.09
COMMD4-225ENST00000569245 NUP155O75694 1391 aa21.84■■□□□ 1.09
COMMD4-225ENST00000569245 ZNF335Q9H4Z2 1342 aaPredicted RBP21.83■■□□□ 1.09
COMMD4-225ENST00000569245 EFCAB6Q5THR3 1501 aa21.83■■□□□ 1.09
COMMD4-225ENST00000569245 IDI1Q13907 227 aa21.82■■□□□ 1.08
COMMD4-225ENST00000569245 SLC52A1Q9NWF4 448 aa21.8■■□□□ 1.08
COMMD4-225ENST00000569245 TXNDC2Q86VQ3 553 aa21.79■■□□□ 1.08
COMMD4-225ENST00000569245 EID1Q9Y6B2 187 aa21.79■■□□□ 1.08
COMMD4-225ENST00000569245 NOS1P29475 1434 aa21.79■■□□□ 1.08
COMMD4-225ENST00000569245 UNC13BO14795 1591 aa21.78■■□□□ 1.08
COMMD4-225ENST00000569245 RPRD2Q5VT52 1461 aaKnown RBP21.78■■□□□ 1.08
COMMD4-225ENST00000569245 NPHP4O75161 1426 aaPredicted RBP21.78■■□□□ 1.08
COMMD4-225ENST00000569245 NEURL4Q96JN8 1562 aa21.75■■□□□ 1.07
COMMD4-225ENST00000569245 LTKP29376 864 aa21.75■■□□□ 1.07
COMMD4-225ENST00000569245 LTBP4Q8N2S1 1624 aa21.75■■□□□ 1.07
COMMD4-225ENST00000569245 TET3O43151 1660 aa21.75■■□□□ 1.07
COMMD4-225ENST00000569245 POLR1AO95602 1720 aaPredicted RBP21.75■■□□□ 1.07
COMMD4-225ENST00000569245 UBR1Q8IWV7 1749 aa21.75■■□□□ 1.07
COMMD4-225ENST00000569245 NAIPQ13075 1403 aa21.74■■□□□ 1.07
COMMD4-225ENST00000569245 SYNMO15061 1565 aa21.74■■□□□ 1.07
COMMD4-225ENST00000569245 PIK3C2BO00750 1634 aa21.73■■□□□ 1.07
COMMD4-225ENST00000569245 MED14O60244 1454 aa21.73■■□□□ 1.07
COMMD4-225ENST00000569245 TMEM2Q9UHN6 1383 aa21.73■■□□□ 1.07
COMMD4-225ENST00000569245 SCAF11Q99590 1463 aaKnown RBP21.72■■□□□ 1.07
COMMD4-225ENST00000569245 CHGAP10645 457 aaKnown RBP21.72■■□□□ 1.07
COMMD4-225ENST00000569245 TRIM52Q96A61 297 aa21.72■■□□□ 1.07
COMMD4-225ENST00000569245 IQGAP3Q86VI3 1631 aa21.7■■□□□ 1.06
COMMD4-225ENST00000569245 ARHGAP23Q9P227 1491 aa21.7■■□□□ 1.06
COMMD4-225ENST00000569245 SLIT1O75093 1534 aa21.7■■□□□ 1.06
COMMD4-225ENST00000569245 HFM1A2PYH4 1435 aa21.69■■□□□ 1.06
COMMD4-225ENST00000569245 GCC2Q8IWJ2 1684 aa21.69■■□□□ 1.06
COMMD4-225ENST00000569245 BCANQ96GW7 911 aa21.68■■□□□ 1.06
COMMD4-225ENST00000569245 IQGAP1P46940 1657 aa21.66■■□□□ 1.06
COMMD4-225ENST00000569245 ADGRB3O60242 1522 aa21.65■■□□□ 1.06
COMMD4-225ENST00000569245 HDGFP51858 240 aaKnown RBP21.65■■□□□ 1.06
COMMD4-225ENST00000569245 TRIM26Q12899 539 aaPredicted RBP21.65■■□□□ 1.06
COMMD4-225ENST00000569245 E9PCH4 1651 aa21.65■■□□□ 1.06
COMMD4-225ENST00000569245 PPP1R15AO75807 674 aaPredicted RBP21.64■■□□□ 1.05
COMMD4-225ENST00000569245 IQSEC2Q5JU85 1478 aa21.64■■□□□ 1.05
COMMD4-225ENST00000569245 UBAP1LF5GYI3 381 aa21.63■■□□□ 1.05
COMMD4-225ENST00000569245 SENP3Q9H4L4 574 aaPredicted RBP21.63■■□□□ 1.05
COMMD4-225ENST00000569245 KDM5AP29375 1690 aaKnown RBP21.62■■□□□ 1.05
COMMD4-225ENST00000569245 CPS1P31327 1500 aa21.61■■□□□ 1.05
COMMD4-225ENST00000569245 SLC4A1APQ9BWU0 796 aaKnown RBP21.61■■□□□ 1.05
COMMD4-225ENST00000569245 SLC26A8Q96RN1 970 aa21.6■■□□□ 1.05
COMMD4-225ENST00000569245 RIMS2Q9UQ26 1411 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms