RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 TNRQ92752 1358 aa19.63■□□□□ 0.73
VPS9D1-207ENST00000568691 STRCP1A6NGW2 1772 aa19.62■□□□□ 0.73
VPS9D1-207ENST00000568691 MED14O60244 1454 aa19.62■□□□□ 0.73
VPS9D1-207ENST00000568691 CCDC18Q5T9S5 1454 aa19.62■□□□□ 0.73
VPS9D1-207ENST00000568691 LRRC7Q96NW7 1537 aa19.61■□□□□ 0.73
VPS9D1-207ENST00000568691 NPHP4O75161 1426 aaPredicted RBP19.59■□□□□ 0.73
VPS9D1-207ENST00000568691 POTEAQ6S8J7 498 aa19.58■□□□□ 0.72
VPS9D1-207ENST00000568691 ANKLE2Q86XL3 938 aa19.58■□□□□ 0.72
VPS9D1-207ENST00000568691 PZPP20742 1482 aa19.57■□□□□ 0.72
VPS9D1-207ENST00000568691 ZNF644Q9H582 1327 aaPredicted RBP19.56■□□□□ 0.72
VPS9D1-207ENST00000568691 DEPDC5O75140 1603 aa19.56■□□□□ 0.72
VPS9D1-207ENST00000568691 MBD5Q9P267 1494 aa19.55■□□□□ 0.72
VPS9D1-207ENST00000568691 ADGBQ8N7X0 1667 aa19.55■□□□□ 0.72
VPS9D1-207ENST00000568691 PLEKHH2Q8IVE3 1493 aa19.54■□□□□ 0.72
VPS9D1-207ENST00000568691 CFDP1Q9UEE9 299 aaPredicted RBP19.54■□□□□ 0.72
VPS9D1-207ENST00000568691 MIA2Q96PC5 1412 aa19.53■□□□□ 0.72
VPS9D1-207ENST00000568691 RNF17Q9BXT8 1623 aaKnown RBP19.53■□□□□ 0.72
VPS9D1-207ENST00000568691 DHX29Q7Z478 1369 aaKnown RBP19.53■□□□□ 0.72
VPS9D1-207ENST00000568691 THEMISQ8N1K5 641 aaPredicted RBP19.51■□□□□ 0.71
VPS9D1-207ENST00000568691 UGGT1Q9NYU2 1555 aa19.51■□□□□ 0.71
VPS9D1-207ENST00000568691 IQGAP1P46940 1657 aa19.5■□□□□ 0.71
VPS9D1-207ENST00000568691 KDM5DQ9BY66 1539 aa19.5■□□□□ 0.71
VPS9D1-207ENST00000568691 FYCO1Q9BQS8 1478 aa19.49■□□□□ 0.71
VPS9D1-207ENST00000568691 NLRP1Q9C000 1473 aa19.49■□□□□ 0.71
VPS9D1-207ENST00000568691 RTEL1-TNFRSF6BF6WH68 1400 aa19.48■□□□□ 0.71
VPS9D1-207ENST00000568691 SYNMO15061 1565 aa19.48■□□□□ 0.71
VPS9D1-207ENST00000568691 KIF3BO15066 747 aa19.47■□□□□ 0.71
VPS9D1-207ENST00000568691 FAM135AQ9P2D6 1515 aa19.46■□□□□ 0.71
VPS9D1-207ENST00000568691 CCNB3Q8WWL7 1395 aa19.46■□□□□ 0.71
VPS9D1-207ENST00000568691 CHIC1Q5VXU3 224 aa19.46■□□□□ 0.71
VPS9D1-207ENST00000568691 ZC3H13Q5T200 1668 aaKnown RBP19.45■□□□□ 0.7
VPS9D1-207ENST00000568691 XIRP1Q702N8 1843 aaKnown RBP19.43■□□□□ 0.7
VPS9D1-207ENST00000568691 TIAM1Q13009 1591 aa19.42■□□□□ 0.7
VPS9D1-207ENST00000568691 WASHC2CQ9Y4E1 1318 aa19.42■□□□□ 0.7
VPS9D1-207ENST00000568691 SETD1AO15047 1707 aaKnown RBP19.41■□□□□ 0.7
VPS9D1-207ENST00000568691 FAM135BQ49AJ0 1406 aa19.4■□□□□ 0.7
VPS9D1-207ENST00000568691 LTKP29376 864 aa19.38■□□□□ 0.69
VPS9D1-207ENST00000568691 NCOA2Q15596 1464 aa19.37■□□□□ 0.69
VPS9D1-207ENST00000568691 ERVK-7P63135 1459 aa19.35■□□□□ 0.69
VPS9D1-207ENST00000568691 ARHGAP23Q9P227 1491 aa19.34■□□□□ 0.69
VPS9D1-207ENST00000568691 ABCC3O15438 1527 aa19.33■□□□□ 0.68
VPS9D1-207ENST00000568691 SCAF11Q99590 1463 aaKnown RBP19.33■□□□□ 0.68
VPS9D1-207ENST00000568691 CCDC141Q6ZP82 1450 aa19.32■□□□□ 0.68
VPS9D1-207ENST00000568691 MTUS2Q5JR59 1369 aa19.32■□□□□ 0.68
VPS9D1-207ENST00000568691 UBR1Q8IWV7 1749 aa19.31■□□□□ 0.68
VPS9D1-207ENST00000568691 SLIT1O75093 1534 aa19.29■□□□□ 0.68
VPS9D1-207ENST00000568691 MAP3K1Q13233 1512 aa19.29■□□□□ 0.68
VPS9D1-207ENST00000568691 UPF1Q92900 1129 aaKnown RBP eCLIP19.28■□□□□ 0.68
VPS9D1-207ENST00000568691 TMEM94Q12767 1356 aa19.28■□□□□ 0.68
VPS9D1-207ENST00000568691 MROH1Q8NDA8 1641 aa19.28■□□□□ 0.68
VPS9D1-207ENST00000568691 ROBO1Q9Y6N7 1651 aa19.27■□□□□ 0.68
VPS9D1-207ENST00000568691 CEP162Q5TB80 1403 aa19.27■□□□□ 0.68
VPS9D1-207ENST00000568691 SRCAPQ6ZRS2 3230 aa19.26■□□□□ 0.67
VPS9D1-207ENST00000568691 TXNDC2Q86VQ3 553 aa19.26■□□□□ 0.67
VPS9D1-207ENST00000568691 RBM33Q96EV2 1170 aaKnown RBP19.26■□□□□ 0.67
VPS9D1-207ENST00000568691 CAMSAP2Q08AD1 1489 aa19.26■□□□□ 0.67
VPS9D1-207ENST00000568691 EHBP1L1Q8N3D4 1523 aa19.23■□□□□ 0.67
VPS9D1-207ENST00000568691 LRP6O75581 1613 aa19.21■□□□□ 0.67
VPS9D1-207ENST00000568691 ARHGEF5Q12774 1597 aa19.19■□□□□ 0.66
VPS9D1-207ENST00000568691 RSPH4AQ5TD94 716 aa19.18■□□□□ 0.66
VPS9D1-207ENST00000568691 TMEM2Q9UHN6 1383 aa19.18■□□□□ 0.66
VPS9D1-207ENST00000568691 KCNA6P17658 529 aa19.17■□□□□ 0.66
VPS9D1-207ENST00000568691 TET3O43151 1660 aa19.17■□□□□ 0.66
VPS9D1-207ENST00000568691 JCADQ9P266 1359 aa19.17■□□□□ 0.66
VPS9D1-207ENST00000568691 CEP152O94986 1710 aa19.17■□□□□ 0.66
VPS9D1-207ENST00000568691 CFAP65Q6ZU64 1925 aaKnown RBP19.15■□□□□ 0.66
VPS9D1-207ENST00000568691 PRDM15P57071 1507 aaPredicted RBP19.15■□□□□ 0.66
VPS9D1-207ENST00000568691 PROSER2Q86WR7 435 aaPredicted RBP19.14■□□□□ 0.65
VPS9D1-207ENST00000568691 LRRC9Q6ZRR7 1453 aa19.14■□□□□ 0.65
VPS9D1-207ENST00000568691 COL16A1Q07092 1604 aaPredicted RBP19.14■□□□□ 0.65
VPS9D1-207ENST00000568691 TRIM52Q96A61 297 aa19.13■□□□□ 0.65
VPS9D1-207ENST00000568691 SLC26A8Q96RN1 970 aa19.13■□□□□ 0.65
VPS9D1-207ENST00000568691 ARHGAP31Q2M1Z3 1444 aa19.13■□□□□ 0.65
VPS9D1-207ENST00000568691 PIK3C2BO00750 1634 aa19.13■□□□□ 0.65
VPS9D1-207ENST00000568691 EIF2AK4Q9P2K8 1649 aaKnown RBP19.13■□□□□ 0.65
VPS9D1-207ENST00000568691 PHLPP1O60346 1717 aa19.13■□□□□ 0.65
VPS9D1-207ENST00000568691 MAST1Q9Y2H9 1570 aa19.12■□□□□ 0.65
VPS9D1-207ENST00000568691 SLAIN2Q9P270 581 aa19.12■□□□□ 0.65
VPS9D1-207ENST00000568691 EID1Q9Y6B2 187 aa19.12■□□□□ 0.65
VPS9D1-207ENST00000568691 NWD1Q149M9 1564 aa19.11■□□□□ 0.65
VPS9D1-207ENST00000568691 TSPY4P0CV99 314 aa19.11■□□□□ 0.65
VPS9D1-207ENST00000568691 TSPY10P0CW01 314 aa19.11■□□□□ 0.65
VPS9D1-207ENST00000568691 NKTRP30414 1462 aaKnown RBP19.09■□□□□ 0.65
VPS9D1-207ENST00000568691 IDI1Q13907 227 aa19.06■□□□□ 0.64
VPS9D1-207ENST00000568691 MSH6P52701 1360 aa19.05■□□□□ 0.64
VPS9D1-207ENST00000568691 EFCAB6Q5THR3 1501 aa19.05■□□□□ 0.64
VPS9D1-207ENST00000568691 SPATA31A6Q5VVP1 1343 aa19.04■□□□□ 0.64
VPS9D1-207ENST00000568691 ZNF772Q68DY9 489 aaPredicted RBP19.04■□□□□ 0.64
VPS9D1-207ENST00000568691 FGD6Q6ZV73 1430 aa19.04■□□□□ 0.64
VPS9D1-207ENST00000568691 CDK12Q9NYV4 1490 aaPredicted RBP19.01■□□□□ 0.63
VPS9D1-207ENST00000568691 KDM5AP29375 1690 aaKnown RBP19.01■□□□□ 0.63
VPS9D1-207ENST00000568691 DUOX2Q9NRD8 1548 aa19■□□□□ 0.63
VPS9D1-207ENST00000568691 RXRBP28702 533 aa19■□□□□ 0.63
VPS9D1-207ENST00000568691 AHDC1Q5TGY3 1603 aaPredicted RBP18.99■□□□□ 0.63
VPS9D1-207ENST00000568691 MEX3CQ5U5Q3 659 aaKnown RBP18.98■□□□□ 0.63
VPS9D1-207ENST00000568691 SHPRHQ149N8 1683 aa18.98■□□□□ 0.63
VPS9D1-207ENST00000568691 DIP2AQ14689 1571 aa18.98■□□□□ 0.63
VPS9D1-207ENST00000568691 STAG3Q9UJ98 1225 aa18.96■□□□□ 0.63
VPS9D1-207ENST00000568691 RGS12O14924 1447 aa18.96■□□□□ 0.63
VPS9D1-207ENST00000568691 NOS1P29475 1434 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms