RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 PDS5BQ9NTI5 1447 aa13.43□□□□□ -0.26
USB1-212ENST00000566082 CCDC144AA2RUR9 1427 aa13.42□□□□□ -0.26
USB1-212ENST00000566082 GOLGA6L3A6NEY3 463 aa13.42□□□□□ -0.26
USB1-212ENST00000566082 BIVM-ERCC5R4GMW8 1640 aa13.42□□□□□ -0.26
USB1-212ENST00000566082 PRKCSHP14314 528 aaPredicted RBP13.42□□□□□ -0.26
USB1-212ENST00000566082 AQRO60306 1485 aaKnown RBP eCLIP13.42□□□□□ -0.26
USB1-212ENST00000566082 MAPK8IP3Q9UPT6 1336 aa13.41□□□□□ -0.26
USB1-212ENST00000566082 RWDD1Q9H446 243 aaPredicted RBP13.4□□□□□ -0.26
USB1-212ENST00000566082 NBPF1Q3BBV0 1214 aa13.4□□□□□ -0.26
USB1-212ENST00000566082 ANKRD30BQ9BXX2 1392 aa13.39□□□□□ -0.27
USB1-212ENST00000566082 PTPN23Q9H3S7 1636 aa13.39□□□□□ -0.27
USB1-212ENST00000566082 ANKRD50Q9ULJ7 1429 aa13.39□□□□□ -0.27
USB1-212ENST00000566082 PMFBP1Q8TBY8 1022 aa13.39□□□□□ -0.27
USB1-212ENST00000566082 EHBP1L1Q8N3D4 1523 aa13.38□□□□□ -0.27
USB1-212ENST00000566082 U2AF1L5P0DN76 240 aaPredicted RBP13.38□□□□□ -0.27
USB1-212ENST00000566082 U2AF1Q01081 240 aaKnown RBP eCLIP13.38□□□□□ -0.27
USB1-212ENST00000566082 RSPH6AQ9H0K4 717 aa13.38□□□□□ -0.27
USB1-212ENST00000566082 STAG3Q9UJ98 1225 aa13.38□□□□□ -0.27
USB1-212ENST00000566082 TPRNQ4KMQ1 711 aa13.37□□□□□ -0.27
USB1-212ENST00000566082 ITPRIPQ8IWB1 547 aa13.37□□□□□ -0.27
USB1-212ENST00000566082 SAFB2Q14151 953 aaKnown RBP eCLIP13.37□□□□□ -0.27
USB1-212ENST00000566082 C20orf194Q5TEA3 1177 aa13.37□□□□□ -0.27
USB1-212ENST00000566082 POLA1P09884 1462 aaPredicted RBP13.36□□□□□ -0.27
USB1-212ENST00000566082 CARMIL2Q6F5E8 1435 aa13.36□□□□□ -0.27
USB1-212ENST00000566082 FOXD4L1Q9NU39 408 aa13.36□□□□□ -0.27
USB1-212ENST00000566082 CGNL1Q0VF96 1302 aa13.35□□□□□ -0.27
USB1-212ENST00000566082 E9PSI1 815 aa13.35□□□□□ -0.27
USB1-212ENST00000566082 PANK1Q8TE04 598 aa13.35□□□□□ -0.27
USB1-212ENST00000566082 JPH4Q96JJ6 628 aa13.35□□□□□ -0.27
USB1-212ENST00000566082 KIAA1107Q9UPP5 1409 aa13.35□□□□□ -0.27
USB1-212ENST00000566082 MIA2Q96PC5 1412 aa13.35□□□□□ -0.27
USB1-212ENST00000566082 SUPT6HQ7KZ85 1726 aaKnown RBP13.34□□□□□ -0.27
USB1-212ENST00000566082 DAPK1P53355 1430 aa13.34□□□□□ -0.27
USB1-212ENST00000566082 SMC4Q9NTJ3 1288 aa13.34□□□□□ -0.27
USB1-212ENST00000566082 PTMAP06454 111 aaKnown RBP13.33□□□□□ -0.28
USB1-212ENST00000566082 NESP48681 1621 aa13.33□□□□□ -0.28
USB1-212ENST00000566082 BCAR3O75815 825 aa13.32□□□□□ -0.28
USB1-212ENST00000566082 CDK13Q14004 1512 aaKnown RBP13.32□□□□□ -0.28
USB1-212ENST00000566082 TOPBP1Q92547 1522 aa13.31□□□□□ -0.28
USB1-212ENST00000566082 RPRD2Q5VT52 1461 aaKnown RBP13.31□□□□□ -0.28
USB1-212ENST00000566082 DNMBPQ6XZF7 1577 aa13.31□□□□□ -0.28
USB1-212ENST00000566082 GBP4Q96PP9 640 aa13.31□□□□□ -0.28
USB1-212ENST00000566082 DNTTIP2Q5QJE6 756 aaKnown RBP13.31□□□□□ -0.28
USB1-212ENST00000566082 MSNP26038 577 aaKnown RBP13.3□□□□□ -0.28
USB1-212ENST00000566082 PPP2R1AP30153 589 aa13.3□□□□□ -0.28
USB1-212ENST00000566082 ARID3AQ99856 593 aa13.28□□□□□ -0.28
USB1-212ENST00000566082 PRG4Q92954 1404 aaPredicted RBP13.28□□□□□ -0.28
USB1-212ENST00000566082 APBB1O00213 710 aa13.28□□□□□ -0.28
USB1-212ENST00000566082 EPRSP07814 1512 aaKnown RBP13.28□□□□□ -0.28
USB1-212ENST00000566082 ZBTB7CA1YPR0 619 aa13.28□□□□□ -0.28
USB1-212ENST00000566082 SRPK2P78362 688 aaKnown RBP13.28□□□□□ -0.28
USB1-212ENST00000566082 HSP90AA2PQ14568 343 aaPredicted RBP13.28□□□□□ -0.28
USB1-212ENST00000566082 RSPH4AQ5TD94 716 aa13.28□□□□□ -0.28
USB1-212ENST00000566082 DNAJC5BQ9UF47 199 aa13.27□□□□□ -0.29
USB1-212ENST00000566082 TRAK1Q9UPV9 953 aa13.27□□□□□ -0.29
USB1-212ENST00000566082 VSIG10Q8N0Z9 540 aa13.26□□□□□ -0.29
USB1-212ENST00000566082 ABCC5O15440 1437 aa13.26□□□□□ -0.29
USB1-212ENST00000566082 ROCK1Q13464 1354 aa13.25□□□□□ -0.29
USB1-212ENST00000566082 EIF3AQ14152 1382 aaKnown RBP13.25□□□□□ -0.29
USB1-212ENST00000566082 IPO8O15397 1037 aaKnown RBP13.25□□□□□ -0.29
USB1-212ENST00000566082 POGKQ9P215 609 aa13.25□□□□□ -0.29
USB1-212ENST00000566082 ABCA10Q8WWZ4 1543 aa13.25□□□□□ -0.29
USB1-212ENST00000566082 KIF3BO15066 747 aa13.25□□□□□ -0.29
USB1-212ENST00000566082 NPM1P06748 294 aaKnown RBP eCLIP13.25□□□□□ -0.29
USB1-212ENST00000566082 CASC1Q6TDU7 716 aa13.25□□□□□ -0.29
USB1-212ENST00000566082 STK26Q9P289 416 aa13.25□□□□□ -0.29
USB1-212ENST00000566082 KANK1Q14678 1352 aa13.25□□□□□ -0.29
USB1-212ENST00000566082 PLCB2Q00722 1185 aa13.25□□□□□ -0.29
USB1-212ENST00000566082 EFCAB2Q5VUJ9 269 aa13.25□□□□□ -0.29
USB1-212ENST00000566082 ERCC6Q03468 1493 aa13.25□□□□□ -0.29
USB1-212ENST00000566082 WASHC2CQ9Y4E1 1318 aa13.24□□□□□ -0.29
USB1-212ENST00000566082 ZKSCAN2Q63HK3 967 aa13.24□□□□□ -0.29
USB1-212ENST00000566082 CHMP5Q9NZZ3 219 aa13.24□□□□□ -0.29
USB1-212ENST00000566082 DDX11L8A8MPP1 907 aa13.23□□□□□ -0.29
USB1-212ENST00000566082 GGT6Q6P531 493 aa13.22□□□□□ -0.29
USB1-212ENST00000566082 FAM43AQ8N2R8 423 aa13.22□□□□□ -0.29
USB1-212ENST00000566082 C22orf23Q9BZE7 217 aa13.22□□□□□ -0.29
USB1-212ENST00000566082 NUTM2DQ5VT03 806 aaPredicted RBP13.22□□□□□ -0.29
USB1-212ENST00000566082 CHMP4BQ9H444 224 aaKnown RBP13.22□□□□□ -0.29
USB1-212ENST00000566082 HECW1Q76N89 1606 aa13.21□□□□□ -0.29
USB1-212ENST00000566082 PDZRN3Q9UPQ7 1066 aa13.21□□□□□ -0.3
USB1-212ENST00000566082 SPAG9O60271 1321 aaKnown RBP13.2□□□□□ -0.3
USB1-212ENST00000566082 DHX29Q7Z478 1369 aaKnown RBP13.2□□□□□ -0.3
USB1-212ENST00000566082 C9orf84Q5VXU9 1444 aa13.2□□□□□ -0.3
USB1-212ENST00000566082 DZIP1LQ8IYY4 767 aaKnown RBP13.2□□□□□ -0.3
USB1-212ENST00000566082 ELL2O00472 640 aaPredicted RBP13.19□□□□□ -0.3
USB1-212ENST00000566082 MRC2Q9UBG0 1479 aa13.19□□□□□ -0.3
USB1-212ENST00000566082 TRAK2O60296 914 aa13.19□□□□□ -0.3
USB1-212ENST00000566082 DDX49Q9Y6V7 483 aaKnown RBP13.19□□□□□ -0.3
USB1-212ENST00000566082 ANKRD45Q5TZF3 282 aa13.19□□□□□ -0.3
USB1-212ENST00000566082 CALD1Q05682 793 aaKnown RBP13.18□□□□□ -0.3
USB1-212ENST00000566082 SLFN5Q08AF3 891 aa13.18□□□□□ -0.3
USB1-212ENST00000566082 TCP11L2Q8N4U5 519 aa13.18□□□□□ -0.3
USB1-212ENST00000566082 LNPKQ9C0E8 428 aa13.18□□□□□ -0.3
USB1-212ENST00000566082 TROQ12816 1431 aaPredicted RBP13.18□□□□□ -0.3
USB1-212ENST00000566082 PDE3AQ14432 1141 aa13.18□□□□□ -0.3
USB1-212ENST00000566082 DUSP27Q5VZP5 1158 aa13.18□□□□□ -0.3
USB1-212ENST00000566082 CFAP43Q8NDM7 1665 aa13.18□□□□□ -0.3
USB1-212ENST00000566082 RUNDC1Q96C34 613 aa13.17□□□□□ -0.3
USB1-212ENST00000566082 URB2Q14146 1524 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms