RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 DUOX2Q9NRD8 1548 aa14.21□□□□□ -0.13
VPS35-206ENST00000565228 KIF3BO15066 747 aa14.21□□□□□ -0.13
VPS35-206ENST00000565228 GGT6Q6P531 493 aa14.21□□□□□ -0.13
VPS35-206ENST00000565228 PLPPR3Q6T4P5 718 aa14.21□□□□□ -0.13
VPS35-206ENST00000565228 RNF17Q9BXT8 1623 aaKnown RBP14.21□□□□□ -0.13
VPS35-206ENST00000565228 ITGAEP38570 1179 aa14.2□□□□□ -0.14
VPS35-206ENST00000565228 LMTK3Q96Q04 1460 aa14.19□□□□□ -0.14
VPS35-206ENST00000565228 EIF2AK4Q9P2K8 1649 aaKnown RBP14.19□□□□□ -0.14
VPS35-206ENST00000565228 DEPDC5O75140 1603 aa14.17□□□□□ -0.14
VPS35-206ENST00000565228 ANKRD30AQ9BXX3 1397 aa14.17□□□□□ -0.14
VPS35-206ENST00000565228 ERBINQ96RT1 1412 aa14.16□□□□□ -0.14
VPS35-206ENST00000565228 CEP152O94986 1710 aa14.16□□□□□ -0.14
VPS35-206ENST00000565228 ZMYM3Q14202 1370 aa14.16□□□□□ -0.14
VPS35-206ENST00000565228 MROH2AA6NES4 1674 aa14.16□□□□□ -0.14
VPS35-206ENST00000565228 ABCC3O15438 1527 aa14.15□□□□□ -0.14
VPS35-206ENST00000565228 ROCK1Q13464 1354 aa14.15□□□□□ -0.14
VPS35-206ENST00000565228 VWDEQ8N2E2 1590 aa14.14□□□□□ -0.15
VPS35-206ENST00000565228 PRDM15P57071 1507 aaPredicted RBP14.14□□□□□ -0.15
VPS35-206ENST00000565228 FBXO31Q5XUX0 539 aaPredicted RBP14.13□□□□□ -0.15
VPS35-206ENST00000565228 KDM5DQ9BY66 1539 aa14.13□□□□□ -0.15
VPS35-206ENST00000565228 CNTLNQ9NXG0 1405 aa14.12□□□□□ -0.15
VPS35-206ENST00000565228 ANKRD50Q9ULJ7 1429 aa14.12□□□□□ -0.15
VPS35-206ENST00000565228 CFAP65Q6ZU64 1925 aaKnown RBP14.11□□□□□ -0.15
VPS35-206ENST00000565228 NAIPQ13075 1403 aa14.1□□□□□ -0.15
VPS35-206ENST00000565228 SETD1BQ9UPS6 1966 aaKnown RBP14.09□□□□□ -0.15
VPS35-206ENST00000565228 CAMSAP1Q5T5Y3 1602 aa14.09□□□□□ -0.15
VPS35-206ENST00000565228 PPP6R1Q9UPN7 881 aa14.09□□□□□ -0.15
VPS35-206ENST00000565228 UNC13BO14795 1591 aa14.09□□□□□ -0.15
VPS35-206ENST00000565228 HSPA2P54652 639 aa14.08□□□□□ -0.16
VPS35-206ENST00000565228 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.08□□□□□ -0.16
VPS35-206ENST00000565228 WASHC2CQ9Y4E1 1318 aa14.08□□□□□ -0.16
VPS35-206ENST00000565228 ZC3H13Q5T200 1668 aaKnown RBP14.07□□□□□ -0.16
VPS35-206ENST00000565228 GCC2Q8IWJ2 1684 aa14.07□□□□□ -0.16
VPS35-206ENST00000565228 PZPP20742 1482 aa14.07□□□□□ -0.16
VPS35-206ENST00000565228 FAM135AQ9P2D6 1515 aa14.07□□□□□ -0.16
VPS35-206ENST00000565228 SOCS7O14512 581 aa14.07□□□□□ -0.16
VPS35-206ENST00000565228 ILDR2Q71H61 639 aa14.07□□□□□ -0.16
VPS35-206ENST00000565228 PREX1Q8TCU6 1659 aa14.07□□□□□ -0.16
VPS35-206ENST00000565228 LMTK2Q8IWU2 1503 aa14.06□□□□□ -0.16
VPS35-206ENST00000565228 HFM1A2PYH4 1435 aa14.05□□□□□ -0.16
VPS35-206ENST00000565228 NPATQ14207 1427 aa14.05□□□□□ -0.16
VPS35-206ENST00000565228 MYO3AQ8NEV4 1616 aa14.04□□□□□ -0.16
VPS35-206ENST00000565228 ESF1Q9H501 851 aaKnown RBP14.04□□□□□ -0.16
VPS35-206ENST00000565228 SPATA31D1Q6ZQQ2 1576 aa14.04□□□□□ -0.16
VPS35-206ENST00000565228 ERVK-7P63135 1459 aa14.03□□□□□ -0.16
VPS35-206ENST00000565228 STRCQ7RTU9 1775 aa14.02□□□□□ -0.16
VPS35-206ENST00000565228 EFCAB6Q5THR3 1501 aa14.02□□□□□ -0.16
VPS35-206ENST00000565228 ARHGAP31Q2M1Z3 1444 aa14.02□□□□□ -0.16
VPS35-206ENST00000565228 IQGAP3Q86VI3 1631 aa14.01□□□□□ -0.17
VPS35-206ENST00000565228 E9PCH4 1651 aa14.01□□□□□ -0.17
VPS35-206ENST00000565228 ZNF142P52746 1687 aaPredicted RBP14.01□□□□□ -0.17
VPS35-206ENST00000565228 SYNMO15061 1565 aa14□□□□□ -0.17
VPS35-206ENST00000565228 TET3O43151 1660 aa14□□□□□ -0.17
VPS35-206ENST00000565228 UHRF1BP1Q6BDS2 1440 aa13.99□□□□□ -0.17
VPS35-206ENST00000565228 TNRQ92752 1358 aa13.99□□□□□ -0.17
VPS35-206ENST00000565228 CEP170BQ9Y4F5 1589 aaPredicted RBP13.99□□□□□ -0.17
VPS35-206ENST00000565228 NOS1P29475 1434 aa13.98□□□□□ -0.17
VPS35-206ENST00000565228 NUP155O75694 1391 aa13.97□□□□□ -0.17
VPS35-206ENST00000565228 A2ML1A8K2U0 1454 aa13.96□□□□□ -0.17
VPS35-206ENST00000565228 UGGT1Q9NYU2 1555 aa13.96□□□□□ -0.18
VPS35-206ENST00000565228 KANK1Q14678 1352 aa13.96□□□□□ -0.18
VPS35-206ENST00000565228 DISP3Q9P2K9 1392 aa13.94□□□□□ -0.18
VPS35-206ENST00000565228 PIK3C2BO00750 1634 aa13.93□□□□□ -0.18
VPS35-206ENST00000565228 UBR1Q8IWV7 1749 aa13.93□□□□□ -0.18
VPS35-206ENST00000565228 PLA2R1Q13018 1463 aa13.93□□□□□ -0.18
VPS35-206ENST00000565228 SETD5Q9C0A6 1442 aa13.92□□□□□ -0.18
VPS35-206ENST00000565228 IDI1Q13907 227 aa13.92□□□□□ -0.18
VPS35-206ENST00000565228 MYO5BQ9ULV0 1848 aa13.92□□□□□ -0.18
VPS35-206ENST00000565228 RAB3GAP2Q9H2M9 1393 aa13.91□□□□□ -0.18
VPS35-206ENST00000565228 RPRD2Q5VT52 1461 aaKnown RBP13.91□□□□□ -0.18
VPS35-206ENST00000565228 NLRP1Q9C000 1473 aa13.91□□□□□ -0.18
VPS35-206ENST00000565228 NCKAP5LQ9HCH0 1330 aa13.9□□□□□ -0.18
VPS35-206ENST00000565228 NEURL4Q96JN8 1562 aa13.9□□□□□ -0.18
VPS35-206ENST00000565228 PTPRTO14522 1441 aa13.89□□□□□ -0.19
VPS35-206ENST00000565228 SPHKAPQ2M3C7 1700 aa13.87□□□□□ -0.19
VPS35-206ENST00000565228 TRIM52Q96A61 297 aa13.87□□□□□ -0.19
VPS35-206ENST00000565228 MSH5O43196 834 aa13.86□□□□□ -0.19
VPS35-206ENST00000565228 CERKQ8TCT0 537 aa13.86□□□□□ -0.19
VPS35-206ENST00000565228 ARHGAP23Q9P227 1491 aa13.86□□□□□ -0.19
VPS35-206ENST00000565228 TMEM131LA2VDJ0 1609 aa13.86□□□□□ -0.19
VPS35-206ENST00000565228 CLTCL1P53675 1640 aa13.86□□□□□ -0.19
VPS35-206ENST00000565228 LTKP29376 864 aa13.85□□□□□ -0.19
VPS35-206ENST00000565228 PKD2Q13563 968 aa13.85□□□□□ -0.19
VPS35-206ENST00000565228 POLR1AO95602 1720 aaPredicted RBP13.84□□□□□ -0.19
VPS35-206ENST00000565228 ADGRB3O60242 1522 aa13.84□□□□□ -0.19
VPS35-206ENST00000565228 PIAS4Q8N2W9 510 aaPredicted RBP13.83□□□□□ -0.2
VPS35-206ENST00000565228 MPHOSPH9Q99550 1183 aa13.83□□□□□ -0.2
VPS35-206ENST00000565228 SLIT1O75093 1534 aa13.83□□□□□ -0.2
VPS35-206ENST00000565228 KDM5AP29375 1690 aaKnown RBP13.82□□□□□ -0.2
VPS35-206ENST00000565228 TRPM2O94759 1503 aa13.82□□□□□ -0.2
VPS35-206ENST00000565228 SLC4A1APQ9BWU0 796 aaKnown RBP13.82□□□□□ -0.2
VPS35-206ENST00000565228 ZFYVE9O95405 1425 aa13.81□□□□□ -0.2
VPS35-206ENST00000565228 SLC52A1Q9NWF4 448 aa13.8□□□□□ -0.2
VPS35-206ENST00000565228 TMEM2Q9UHN6 1383 aa13.8□□□□□ -0.2
VPS35-206ENST00000565228 MED14O60244 1454 aa13.8□□□□□ -0.2
VPS35-206ENST00000565228 ADRA2BP18089 450 aa13.79□□□□□ -0.2
VPS35-206ENST00000565228 THEMISQ8N1K5 641 aaPredicted RBP13.79□□□□□ -0.2
VPS35-206ENST00000565228 LTBP4Q8N2S1 1624 aa13.79□□□□□ -0.2
VPS35-206ENST00000565228 STRCP1A6NGW2 1772 aa13.78□□□□□ -0.2
VPS35-206ENST00000565228 NUTM2DQ5VT03 806 aaPredicted RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms