RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 CEBPAP49715 358 aaPredicted RBP21.72■■□□□ 1.07
USP3-221ENST00000561442 ANKRD50Q9ULJ7 1429 aa21.71■■□□□ 1.07
USP3-221ENST00000561442 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.7■■□□□ 1.06
USP3-221ENST00000561442 PPP6R1Q9UPN7 881 aa21.69■■□□□ 1.06
USP3-221ENST00000561442 CNTLNQ9NXG0 1405 aa21.69■■□□□ 1.06
USP3-221ENST00000561442 EIF2AK4Q9P2K8 1649 aaKnown RBP21.69■■□□□ 1.06
USP3-221ENST00000561442 WASHC2CQ9Y4E1 1318 aa21.68■■□□□ 1.06
USP3-221ENST00000561442 RNF17Q9BXT8 1623 aaKnown RBP21.66■■□□□ 1.06
USP3-221ENST00000561442 ZMYM3Q14202 1370 aa21.64■■□□□ 1.06
USP3-221ENST00000561442 KDM5DQ9BY66 1539 aa21.64■■□□□ 1.05
USP3-221ENST00000561442 CLTCQ00610 1675 aaKnown RBP21.63■■□□□ 1.05
USP3-221ENST00000561442 MROH1Q8NDA8 1641 aa21.63■■□□□ 1.05
USP3-221ENST00000561442 NAIPQ13075 1403 aa21.61■■□□□ 1.05
USP3-221ENST00000561442 ABCC3O15438 1527 aa21.6■■□□□ 1.05
USP3-221ENST00000561442 KANK1Q14678 1352 aa21.6■■□□□ 1.05
USP3-221ENST00000561442 PRDM15P57071 1507 aaPredicted RBP21.6■■□□□ 1.05
USP3-221ENST00000561442 HFM1A2PYH4 1435 aa21.58■■□□□ 1.05
USP3-221ENST00000561442 FAM135AQ9P2D6 1515 aa21.58■■□□□ 1.04
USP3-221ENST00000561442 C3P01024 1663 aa21.57■■□□□ 1.04
USP3-221ENST00000561442 DEPDC5O75140 1603 aa21.57■■□□□ 1.04
USP3-221ENST00000561442 MROH2AA6NES4 1674 aa21.56■■□□□ 1.04
USP3-221ENST00000561442 FBXO31Q5XUX0 539 aaPredicted RBP21.55■■□□□ 1.04
USP3-221ENST00000561442 PZPP20742 1482 aa21.52■■□□□ 1.04
USP3-221ENST00000561442 CEP152O94986 1710 aa21.52■■□□□ 1.03
USP3-221ENST00000561442 NUP155O75694 1391 aa21.51■■□□□ 1.03
USP3-221ENST00000561442 ZC3H13Q5T200 1668 aaKnown RBP21.51■■□□□ 1.03
USP3-221ENST00000561442 GCC2Q8IWJ2 1684 aa21.51■■□□□ 1.03
USP3-221ENST00000561442 UNC13BO14795 1591 aa21.51■■□□□ 1.03
USP3-221ENST00000561442 VWDEQ8N2E2 1590 aa21.51■■□□□ 1.03
USP3-221ENST00000561442 NPATQ14207 1427 aa21.5■■□□□ 1.03
USP3-221ENST00000561442 LMTK2Q8IWU2 1503 aa21.48■■□□□ 1.03
USP3-221ENST00000561442 CAMSAP1Q5T5Y3 1602 aa21.47■■□□□ 1.03
USP3-221ENST00000561442 UHRF1BP1Q6BDS2 1440 aa21.47■■□□□ 1.03
USP3-221ENST00000561442 TRIM52Q96A61 297 aa21.47■■□□□ 1.03
USP3-221ENST00000561442 TNRQ92752 1358 aa21.47■■□□□ 1.03
USP3-221ENST00000561442 LMTK3Q96Q04 1460 aa21.46■■□□□ 1.03
USP3-221ENST00000561442 HSPA2P54652 639 aa21.45■■□□□ 1.02
USP3-221ENST00000561442 ARHGAP31Q2M1Z3 1444 aa21.45■■□□□ 1.02
USP3-221ENST00000561442 SETD5Q9C0A6 1442 aa21.45■■□□□ 1.02
USP3-221ENST00000561442 ERVK-7P63135 1459 aa21.44■■□□□ 1.02
USP3-221ENST00000561442 EFCAB6Q5THR3 1501 aa21.44■■□□□ 1.02
USP3-221ENST00000561442 IQGAP3Q86VI3 1631 aa21.41■■□□□ 1.02
USP3-221ENST00000561442 PREX1Q8TCU6 1659 aa21.4■■□□□ 1.02
USP3-221ENST00000561442 RAB3GAP2Q9H2M9 1393 aa21.4■■□□□ 1.02
USP3-221ENST00000561442 SPATA31D1Q6ZQQ2 1576 aa21.4■■□□□ 1.02
USP3-221ENST00000561442 TET3O43151 1660 aa21.38■■□□□ 1.01
USP3-221ENST00000561442 MYO3AQ8NEV4 1616 aa21.37■■□□□ 1.01
USP3-221ENST00000561442 RPRD2Q5VT52 1461 aaKnown RBP21.35■■□□□ 1.01
USP3-221ENST00000561442 TRIM26Q12899 539 aaPredicted RBP21.35■■□□□ 1.01
USP3-221ENST00000561442 SLC4A1APQ9BWU0 796 aaKnown RBP21.35■■□□□ 1.01
USP3-221ENST00000561442 SETD1BQ9UPS6 1966 aaKnown RBP21.34■■□□□ 1.01
USP3-221ENST00000561442 A2ML1A8K2U0 1454 aa21.34■■□□□ 1.01
USP3-221ENST00000561442 NOS1P29475 1434 aa21.34■■□□□ 1.01
USP3-221ENST00000561442 CEP170BQ9Y4F5 1589 aaPredicted RBP21.34■■□□□ 1.01
USP3-221ENST00000561442 NLRP1Q9C000 1473 aa21.33■■□□□ 1.01
USP3-221ENST00000561442 PKD2Q13563 968 aa21.32■■□□□ 1
USP3-221ENST00000561442 E9PCH4 1651 aa21.31■■□□□ 1
USP3-221ENST00000561442 CFAP65Q6ZU64 1925 aaKnown RBP21.3■■□□□ 1
USP3-221ENST00000561442 SYNMO15061 1565 aa21.3■■□□□ 1
USP3-221ENST00000561442 IDI1Q13907 227 aa21.29■■□□□ 1
USP3-221ENST00000561442 FOXD1Q16676 465 aa21.28■■□□□ 1
USP3-221ENST00000561442 MPHOSPH9Q99550 1183 aa21.28■■□□□ 1
USP3-221ENST00000561442 ZNF142P52746 1687 aaPredicted RBP21.28■■□□□ 1
USP3-221ENST00000561442 UGGT1Q9NYU2 1555 aa21.27■□□□□ 0.99
USP3-221ENST00000561442 SLC52A1Q9NWF4 448 aa21.26■□□□□ 0.99
USP3-221ENST00000561442 STAG3Q9UJ98 1225 aa21.26■□□□□ 0.99
USP3-221ENST00000561442 ACIN1Q9UKV3 1341 aaKnown RBP21.26■□□□□ 0.99
USP3-221ENST00000561442 THEMISQ8N1K5 641 aaPredicted RBP21.24■□□□□ 0.99
USP3-221ENST00000561442 PTPRTO14522 1441 aa21.23■□□□□ 0.99
USP3-221ENST00000561442 HRCP23327 699 aa21.23■□□□□ 0.99
USP3-221ENST00000561442 NCKAP5LQ9HCH0 1330 aa21.23■□□□□ 0.99
USP3-221ENST00000561442 CHGAP10645 457 aaKnown RBP21.22■□□□□ 0.99
USP3-221ENST00000561442 PIK3C2BO00750 1634 aa21.21■□□□□ 0.99
USP3-221ENST00000561442 PLA2R1Q13018 1463 aa21.2■□□□□ 0.98
USP3-221ENST00000561442 ADGRB3O60242 1522 aa21.18■□□□□ 0.98
USP3-221ENST00000561442 TRPM2O94759 1503 aa21.17■□□□□ 0.98
USP3-221ENST00000561442 SPHKAPQ2M3C7 1700 aa21.17■□□□□ 0.98
USP3-221ENST00000561442 UBR1Q8IWV7 1749 aa21.16■□□□□ 0.98
USP3-221ENST00000561442 ANKLE2Q86XL3 938 aa21.16■□□□□ 0.98
USP3-221ENST00000561442 TMEM2Q9UHN6 1383 aa21.14■□□□□ 0.98
USP3-221ENST00000561442 STRCQ7RTU9 1775 aa21.13■□□□□ 0.97
USP3-221ENST00000561442 CLTCL1P53675 1640 aa21.12■□□□□ 0.97
USP3-221ENST00000561442 LTKP29376 864 aa21.12■□□□□ 0.97
USP3-221ENST00000561442 TXNDC2Q86VQ3 553 aa21.12■□□□□ 0.97
USP3-221ENST00000561442 PCGF6Q9BYE7 350 aa21.12■□□□□ 0.97
USP3-221ENST00000561442 DMRT2Q9Y5R5 561 aa21.12■□□□□ 0.97
USP3-221ENST00000561442 EID1Q9Y6B2 187 aa21.11■□□□□ 0.97
USP3-221ENST00000561442 ARHGAP23Q9P227 1491 aa21.11■□□□□ 0.97
USP3-221ENST00000561442 SLIT1O75093 1534 aa21.1■□□□□ 0.97
USP3-221ENST00000561442 TMEM131LA2VDJ0 1609 aa21.1■□□□□ 0.97
USP3-221ENST00000561442 SCAF11Q99590 1463 aaKnown RBP21.09■□□□□ 0.97
USP3-221ENST00000561442 ZNF326Q5BKZ1 582 aaKnown RBP21.09■□□□□ 0.97
USP3-221ENST00000561442 CCDC144AA2RUR9 1427 aa21.09■□□□□ 0.97
USP3-221ENST00000561442 NUTM2DQ5VT03 806 aaPredicted RBP21.08■□□□□ 0.97
USP3-221ENST00000561442 SENP3Q9H4L4 574 aaPredicted RBP21.08■□□□□ 0.97
USP3-221ENST00000561442 RIMS2Q9UQ26 1411 aa21.08■□□□□ 0.97
USP3-221ENST00000561442 NEURL4Q96JN8 1562 aa21.07■□□□□ 0.96
USP3-221ENST00000561442 KDM5AP29375 1690 aaKnown RBP21.07■□□□□ 0.96
USP3-221ENST00000561442 NPHP4O75161 1426 aaPredicted RBP21.06■□□□□ 0.96
USP3-221ENST00000561442 PPP1R15AO75807 674 aaPredicted RBP21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms