RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 MINK1Q8N4C8 1332 aaPredicted RBP7.43□□□□□ -1.22
VPS13C-209ENST00000560637 ABCC5O15440 1437 aa7.43□□□□□ -1.22
VPS13C-209ENST00000560637 TRAPPC8Q9Y2L5 1435 aa7.43□□□□□ -1.22
VPS13C-209ENST00000560637 CAMSAP2Q08AD1 1489 aa7.43□□□□□ -1.22
VPS13C-209ENST00000560637 MAGI3Q5TCQ9 1506 aa7.43□□□□□ -1.22
VPS13C-209ENST00000560637 ST20-MTHFSA0A0A6YYL1 179 aa7.43□□□□□ -1.22
VPS13C-209ENST00000560637 CFAP70Q5T0N1 1121 aa7.43□□□□□ -1.22
VPS13C-209ENST00000560637 AKNAQ7Z591 1439 aa7.43□□□□□ -1.22
VPS13C-209ENST00000560637 WDR7Q9Y4E6 1490 aa7.43□□□□□ -1.22
VPS13C-209ENST00000560637 RRBP1Q9P2E9 1410 aaKnown RBP7.43□□□□□ -1.22
VPS13C-209ENST00000560637 HDGFP51858 240 aaKnown RBP7.43□□□□□ -1.22
VPS13C-209ENST00000560637 PTPRKQ15262 1439 aa7.43□□□□□ -1.22
VPS13C-209ENST00000560637 MRS2Q9HD23 443 aa7.42□□□□□ -1.22
VPS13C-209ENST00000560637 TXNDC2Q86VQ3 553 aa7.42□□□□□ -1.22
VPS13C-209ENST00000560637 ZCCHC11Q5TAX3 1644 aaKnown RBP7.42□□□□□ -1.22
VPS13C-209ENST00000560637 HSPA2P54652 639 aa7.42□□□□□ -1.22
VPS13C-209ENST00000560637 NBPF1Q3BBV0 1214 aa7.42□□□□□ -1.22
VPS13C-209ENST00000560637 ABCA8O94911 1581 aa7.42□□□□□ -1.22
VPS13C-209ENST00000560637 NEFLP07196 543 aa7.41□□□□□ -1.22
VPS13C-209ENST00000560637 PLEKHH2Q8IVE3 1493 aa7.41□□□□□ -1.22
VPS13C-209ENST00000560637 MIA2Q96PC5 1412 aa7.41□□□□□ -1.22
VPS13C-209ENST00000560637 NEUROD2Q15784 382 aa7.41□□□□□ -1.22
VPS13C-209ENST00000560637 HNRNPUQ00839 825 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS13C-209ENST00000560637 SUPT6HQ7KZ85 1726 aaKnown RBP7.41□□□□□ -1.22
VPS13C-209ENST00000560637 DENND4BO75064 1496 aaPredicted RBP7.4□□□□□ -1.22
VPS13C-209ENST00000560637 KIF14Q15058 1648 aa7.4□□□□□ -1.22
VPS13C-209ENST00000560637 KNSTRNQ9Y448 316 aa7.4□□□□□ -1.22
VPS13C-209ENST00000560637 NAIPQ13075 1403 aa7.4□□□□□ -1.22
VPS13C-209ENST00000560637 CFAP74Q9C0B2 1584 aa7.4□□□□□ -1.23
VPS13C-209ENST00000560637 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.4□□□□□ -1.23
VPS13C-209ENST00000560637 CCDC141Q6ZP82 1450 aa7.4□□□□□ -1.23
VPS13C-209ENST00000560637 PPRC1Q5VV67 1664 aaKnown RBP7.39□□□□□ -1.23
VPS13C-209ENST00000560637 PLCH2O75038 1416 aa7.39□□□□□ -1.23
VPS13C-209ENST00000560637 VGFO15240 615 aaPredicted RBP7.39□□□□□ -1.23
VPS13C-209ENST00000560637 MYT1Q01538 1121 aa7.39□□□□□ -1.23
VPS13C-209ENST00000560637 IDI1Q13907 227 aa7.39□□□□□ -1.23
VPS13C-209ENST00000560637 TMF1P82094 1093 aa7.39□□□□□ -1.23
VPS13C-209ENST00000560637 SYCP2Q9BX26 1530 aa7.38□□□□□ -1.23
VPS13C-209ENST00000560637 NCOA1Q15788 1441 aa7.38□□□□□ -1.23
VPS13C-209ENST00000560637 NEFMP07197 916 aa7.38□□□□□ -1.23
VPS13C-209ENST00000560637 NBPF8Q3BBV2 869 aa7.38□□□□□ -1.23
VPS13C-209ENST00000560637 NUTM2GQ5VZR2 741 aa7.37□□□□□ -1.23
VPS13C-209ENST00000560637 SAMD9Q5K651 1589 aa7.37□□□□□ -1.23
VPS13C-209ENST00000560637 NGDNQ8NEJ9 315 aaKnown RBP7.37□□□□□ -1.23
VPS13C-209ENST00000560637 PTPN23Q9H3S7 1636 aa7.37□□□□□ -1.23
VPS13C-209ENST00000560637 NEO1Q92859 1461 aa7.37□□□□□ -1.23
VPS13C-209ENST00000560637 ARAP3Q8WWN8 1544 aa7.36□□□□□ -1.23
VPS13C-209ENST00000560637 CLSPNQ9HAW4 1339 aa7.36□□□□□ -1.23
VPS13C-209ENST00000560637 HFM1A2PYH4 1435 aa7.36□□□□□ -1.23
VPS13C-209ENST00000560637 U2SURPO15042 1029 aaKnown RBP7.36□□□□□ -1.23
VPS13C-209ENST00000560637 DAXXQ9UER7 740 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-209ENST00000560637 WDR43Q15061 677 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS13C-209ENST00000560637 LTV1Q96GA3 475 aaPredicted RBP7.35□□□□□ -1.23
VPS13C-209ENST00000560637 ABCA9Q8IUA7 1624 aa7.35□□□□□ -1.23
VPS13C-209ENST00000560637 TSPOAP1O95153 1857 aa7.35□□□□□ -1.23
VPS13C-209ENST00000560637 CABP2Q9NPB3 220 aa7.35□□□□□ -1.23
VPS13C-209ENST00000560637 ACIN1Q9UKV3 1341 aaKnown RBP7.35□□□□□ -1.23
VPS13C-209ENST00000560637 XPCQ01831 940 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-209ENST00000560637 PMFBP1Q8TBY8 1022 aa7.34□□□□□ -1.23
VPS13C-209ENST00000560637 CDCA8Q53HL2 280 aa7.33□□□□□ -1.24
VPS13C-209ENST00000560637 WAPLQ7Z5K2 1190 aa7.33□□□□□ -1.24
VPS13C-209ENST00000560637 YEATS2Q9ULM3 1422 aa7.33□□□□□ -1.24
VPS13C-209ENST00000560637 THEMISQ8N1K5 641 aaPredicted RBP7.33□□□□□ -1.24
VPS13C-209ENST00000560637 PRAM1Q96QH2 718 aa7.33□□□□□ -1.24
VPS13C-209ENST00000560637 DHX29Q7Z478 1369 aaKnown RBP7.33□□□□□ -1.24
VPS13C-209ENST00000560637 PROSER2Q86WR7 435 aaPredicted RBP7.33□□□□□ -1.24
VPS13C-209ENST00000560637 PIP4K2BP78356 416 aa7.32□□□□□ -1.24
VPS13C-209ENST00000560637 IRX6P78412 446 aaPredicted RBP7.32□□□□□ -1.24
VPS13C-209ENST00000560637 ADGRF5Q8IZF2 1346 aa7.32□□□□□ -1.24
VPS13C-209ENST00000560637 MORC1Q86VD1 984 aa7.32□□□□□ -1.24
VPS13C-209ENST00000560637 USP47Q96K76 1375 aa7.32□□□□□ -1.24
VPS13C-209ENST00000560637 NPM3O75607 178 aaKnown RBP7.31□□□□□ -1.24
VPS13C-209ENST00000560637 PANK3Q9H999 370 aa7.31□□□□□ -1.24
VPS13C-209ENST00000560637 POGZQ7Z3K3 1410 aa7.31□□□□□ -1.24
VPS13C-209ENST00000560637 KIAA1107Q9UPP5 1409 aa7.31□□□□□ -1.24
VPS13C-209ENST00000560637 ANKLE2Q86XL3 938 aa7.31□□□□□ -1.24
VPS13C-209ENST00000560637 SLC52A1Q9NWF4 448 aa7.31□□□□□ -1.24
VPS13C-209ENST00000560637 TIMELESSQ9UNS1 1208 aa7.31□□□□□ -1.24
VPS13C-209ENST00000560637 CCDC9Q9Y3X0 531 aaKnown RBP7.31□□□□□ -1.24
VPS13C-209ENST00000560637 LAS1LQ9Y4W2 734 aaKnown RBP7.31□□□□□ -1.24
VPS13C-209ENST00000560637 ERBINQ96RT1 1412 aa7.31□□□□□ -1.24
VPS13C-209ENST00000560637 CANXP27824 592 aaKnown RBP7.31□□□□□ -1.24
VPS13C-209ENST00000560637 ARXQ96QS3 562 aa7.3□□□□□ -1.24
VPS13C-209ENST00000560637 HDGFL2Q7Z4V5 671 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-209ENST00000560637 MAGI2Q86UL8 1455 aa7.3□□□□□ -1.24
VPS13C-209ENST00000560637 A2MP01023 1474 aa7.3□□□□□ -1.24
VPS13C-209ENST00000560637 ZNF518AQ6AHZ1 1483 aa7.29□□□□□ -1.24
VPS13C-209ENST00000560637 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS13C-209ENST00000560637 CSB-PGBD3P0DP91 1061 aa7.29□□□□□ -1.24
VPS13C-209ENST00000560637 TAOK2Q9UL54 1235 aa7.29□□□□□ -1.24
VPS13C-209ENST00000560637 CENPJQ9HC77 1338 aaPredicted RBP7.29□□□□□ -1.24
VPS13C-209ENST00000560637 CFAP65Q6ZU64 1925 aaKnown RBP7.29□□□□□ -1.24
VPS13C-209ENST00000560637 MAP3K1Q13233 1512 aa7.29□□□□□ -1.24
VPS13C-209ENST00000560637 ESCO1Q5FWF5 840 aa7.29□□□□□ -1.24
VPS13C-209ENST00000560637 SLC12A5Q9H2X9 1139 aa7.29□□□□□ -1.24
VPS13C-209ENST00000560637 ROCK1Q13464 1354 aa7.28□□□□□ -1.24
VPS13C-209ENST00000560637 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS13C-209ENST00000560637 GGNBP2Q9H3C7 697 aa7.28□□□□□ -1.24
VPS13C-209ENST00000560637 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS13C-209ENST00000560637 ATF3P18847 181 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms