RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 NISCHQ9Y2I1 1504 aa10.98□□□□□ -0.65
VPS13C-209ENST00000560637 DCAF8L2P0C7V8 631 aa10.59□□□□□ -0.71
VPS13C-209ENST00000560637 CCDC180Q9P1Z9 1646 aa9.99□□□□□ -0.81
VPS13C-209ENST00000560637 SHROOM4Q9ULL8 1493 aa9.98□□□□□ -0.81
VPS13C-209ENST00000560637 SUPT5HO00267 1087 aaKnown RBP9.76□□□□□ -0.85
VPS13C-209ENST00000560637 ABCC9O60706 1549 aa9.7□□□□□ -0.86
VPS13C-209ENST00000560637 CHIC1Q5VXU3 224 aa9.56□□□□□ -0.88
VPS13C-209ENST00000560637 PABPN1Q86U42 306 aaKnown RBP eCLIP9.47□□□□□ -0.89
VPS13C-209ENST00000560637 RB1CC1Q8TDY2 1594 aa9.45□□□□□ -0.9
VPS13C-209ENST00000560637 NACADO15069 1562 aa9.41□□□□□ -0.9
VPS13C-209ENST00000560637 EHMT2Q96KQ7 1210 aa9.38□□□□□ -0.91
VPS13C-209ENST00000560637 MYO15BQ96JP2 1530 aa9.38□□□□□ -0.91
VPS13C-209ENST00000560637 AEBP2Q6ZN18 517 aaPredicted RBP9.24□□□□□ -0.93
VPS13C-209ENST00000560637 DCAF1Q9Y4B6 1507 aa9.21□□□□□ -0.93
VPS13C-209ENST00000560637 FAM9AQ8IZU1 332 aaPredicted RBP9.18□□□□□ -0.94
VPS13C-209ENST00000560637 ZCCHC6Q5VYS8 1495 aaKnown RBP9.09□□□□□ -0.95
VPS13C-209ENST00000560637 SCRIBQ14160 1630 aa9.09□□□□□ -0.95
VPS13C-209ENST00000560637 UNC13AQ9UPW8 1703 aa9.06□□□□□ -0.96
VPS13C-209ENST00000560637 RANGAP1P46060 587 aaPredicted RBP9.04□□□□□ -0.96
VPS13C-209ENST00000560637 BICRAQ9NZM4 1560 aa9□□□□□ -0.97
VPS13C-209ENST00000560637 TRIM41Q8WV44 630 aa8.96□□□□□ -0.97
VPS13C-209ENST00000560637 TTBK1Q5TCY1 1321 aaPredicted RBP8.92□□□□□ -0.98
VPS13C-209ENST00000560637 DNAJC5BQ9UF47 199 aa8.88□□□□□ -0.99
VPS13C-209ENST00000560637 EIF4G1Q04637 1599 aaKnown RBP8.83□□□□□ -1
VPS13C-209ENST00000560637 CC2D2AQ9P2K1 1620 aa8.81□□□□□ -1
VPS13C-209ENST00000560637 CECR2Q9BXF3 1484 aa8.79□□□□□ -1
VPS13C-209ENST00000560637 UBTFP17480 764 aaKnown RBP8.78□□□□□ -1
VPS13C-209ENST00000560637 ATP1B4Q9UN42 357 aaPredicted RBP8.78□□□□□ -1
VPS13C-209ENST00000560637 LOC105371045A0A1W2PR82 267 aa8.76□□□□□ -1.01
VPS13C-209ENST00000560637 PPARGC1BQ86YN6 1023 aaKnown RBP8.75□□□□□ -1.01
VPS13C-209ENST00000560637 FBLN2P98095 1184 aa8.7□□□□□ -1.02
VPS13C-209ENST00000560637 RSF1Q96T23 1441 aaPredicted RBP8.68□□□□□ -1.02
VPS13C-209ENST00000560637 PHF23Q9BUL5 403 aaPredicted RBP8.67□□□□□ -1.02
VPS13C-209ENST00000560637 APLP2Q06481 763 aa8.64□□□□□ -1.03
VPS13C-209ENST00000560637 SMARCA2P51531 1590 aa8.62□□□□□ -1.03
VPS13C-209ENST00000560637 NCAPD3P42695 1498 aa8.61□□□□□ -1.03
VPS13C-209ENST00000560637 HMGXB3Q12766 1538 aa8.61□□□□□ -1.03
VPS13C-209ENST00000560637 MROH2BQ7Z745 1585 aa8.6□□□□□ -1.03
VPS13C-209ENST00000560637 CUX2O14529 1486 aa8.59□□□□□ -1.03
VPS13C-209ENST00000560637 BAZ1BQ9UIG0 1483 aaKnown RBP8.58□□□□□ -1.04
VPS13C-209ENST00000560637 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.57□□□□□ -1.04
VPS13C-209ENST00000560637 HNRNPUL2Q1KMD3 747 aaKnown RBP8.57□□□□□ -1.04
VPS13C-209ENST00000560637 ARID3CA6NKF2 412 aa8.56□□□□□ -1.04
VPS13C-209ENST00000560637 BAZ1AQ9NRL2 1556 aaPredicted RBP8.55□□□□□ -1.04
VPS13C-209ENST00000560637 PEG3Q9GZU2 1588 aa8.55□□□□□ -1.04
VPS13C-209ENST00000560637 P3H3Q8IVL6 736 aa8.55□□□□□ -1.04
VPS13C-209ENST00000560637 SMARCA4P51532 1647 aa8.53□□□□□ -1.04
VPS13C-209ENST00000560637 PCGF6Q9BYE7 350 aa8.52□□□□□ -1.05
VPS13C-209ENST00000560637 SLC24A1O60721 1099 aa8.51□□□□□ -1.05
VPS13C-209ENST00000560637 ATAD2BQ9ULI0 1458 aa8.51□□□□□ -1.05
VPS13C-209ENST00000560637 ITGAEP38570 1179 aa8.48□□□□□ -1.05
VPS13C-209ENST00000560637 WIZO95785 1651 aa8.47□□□□□ -1.05
VPS13C-209ENST00000560637 LAMC3Q9Y6N6 1575 aa8.47□□□□□ -1.05
VPS13C-209ENST00000560637 ERCC6Q03468 1493 aa8.45□□□□□ -1.06
VPS13C-209ENST00000560637 CSRNP3Q8WYN3 585 aa8.44□□□□□ -1.06
VPS13C-209ENST00000560637 CCDC88BA6NC98 1476 aa8.42□□□□□ -1.06
VPS13C-209ENST00000560637 MYT1LQ9UL68 1186 aa8.4□□□□□ -1.07
VPS13C-209ENST00000560637 PDS5BQ9NTI5 1447 aa8.39□□□□□ -1.07
VPS13C-209ENST00000560637 DNAJC5Q9H3Z4 198 aa8.39□□□□□ -1.07
VPS13C-209ENST00000560637 CHMP7Q8WUX9 453 aaPredicted RBP8.38□□□□□ -1.07
VPS13C-209ENST00000560637 WRNQ14191 1432 aaPredicted RBP eCLIP8.36□□□□□ -1.07
VPS13C-209ENST00000560637 ABCC8Q09428 1581 aa8.35□□□□□ -1.07
VPS13C-209ENST00000560637 THOC2Q8NI27 1593 aaKnown RBP8.34□□□□□ -1.07
VPS13C-209ENST00000560637 TDRD9Q8NDG6 1382 aaKnown RBP8.33□□□□□ -1.08
VPS13C-209ENST00000560637 CADPSQ9ULU8 1353 aa8.32□□□□□ -1.08
VPS13C-209ENST00000560637 NESP48681 1621 aa8.32□□□□□ -1.08
VPS13C-209ENST00000560637 MRC2Q9UBG0 1479 aa8.3□□□□□ -1.08
VPS13C-209ENST00000560637 SOGA1O94964 1423 aa8.29□□□□□ -1.08
VPS13C-209ENST00000560637 WDR62O43379 1518 aa8.28□□□□□ -1.08
VPS13C-209ENST00000560637 TOP2AP11388 1531 aaKnown RBP8.28□□□□□ -1.08
VPS13C-209ENST00000560637 FAM50AQ14320 339 aaKnown RBP8.27□□□□□ -1.08
VPS13C-209ENST00000560637 PRDM2Q13029 1718 aa8.26□□□□□ -1.09
VPS13C-209ENST00000560637 CCER1Q8TC90 406 aaPredicted RBP8.25□□□□□ -1.09
VPS13C-209ENST00000560637 KIF21AQ7Z4S6 1674 aa8.25□□□□□ -1.09
VPS13C-209ENST00000560637 CEP164Q9UPV0 1460 aa8.24□□□□□ -1.09
VPS13C-209ENST00000560637 ZNF777Q9ULD5 760 aaPredicted RBP8.24□□□□□ -1.09
VPS13C-209ENST00000560637 FANCD2Q9BXW9 1451 aa8.23□□□□□ -1.09
VPS13C-209ENST00000560637 PLPPR3Q6T4P5 718 aa8.22□□□□□ -1.09
VPS13C-209ENST00000560637 CFTRP13569 1480 aa8.21□□□□□ -1.09
VPS13C-209ENST00000560637 KCNH8Q96L42 1107 aa8.21□□□□□ -1.1
VPS13C-209ENST00000560637 KIF27Q86VH2 1401 aa8.2□□□□□ -1.1
VPS13C-209ENST00000560637 RUSC2Q8N2Y8 1516 aa8.19□□□□□ -1.1
VPS13C-209ENST00000560637 RAD54L2Q9Y4B4 1467 aa8.18□□□□□ -1.1
VPS13C-209ENST00000560637 TRIM26Q12899 539 aaPredicted RBP8.17□□□□□ -1.1
VPS13C-209ENST00000560637 CARMIL1Q5VZK9 1371 aa8.16□□□□□ -1.1
VPS13C-209ENST00000560637 WDR97A6NE52 1622 aa8.16□□□□□ -1.1
VPS13C-209ENST00000560637 NPM1P06748 294 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS13C-209ENST00000560637 AQRO60306 1485 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS13C-209ENST00000560637 IFT140Q96RY7 1462 aa8.13□□□□□ -1.11
VPS13C-209ENST00000560637 KCNA4P22459 653 aa8.12□□□□□ -1.11
VPS13C-209ENST00000560637 CHIC2Q9UKJ5 165 aa8.12□□□□□ -1.11
VPS13C-209ENST00000560637 CLIP1P30622 1438 aa8.12□□□□□ -1.11
VPS13C-209ENST00000560637 TRIM52Q96A61 297 aa8.11□□□□□ -1.11
VPS13C-209ENST00000560637 FGD5Q6ZNL6 1462 aa8.1□□□□□ -1.11
VPS13C-209ENST00000560637 TRHP20396 242 aaPredicted RBP8.1□□□□□ -1.11
VPS13C-209ENST00000560637 CYB5RLQ6IPT4 315 aa8.09□□□□□ -1.11
VPS13C-209ENST00000560637 CNGB1Q14028 1251 aaPredicted RBP8.09□□□□□ -1.11
VPS13C-209ENST00000560637 SENP3Q9H4L4 574 aaPredicted RBP8.08□□□□□ -1.12
VPS13C-209ENST00000560637 CEP162Q5TB80 1403 aa8.08□□□□□ -1.12
VPS13C-209ENST00000560637 DNMBPQ6XZF7 1577 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms