RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ANKRD30AQ9BXX3 1397 aa14.37□□□□□ -0.11
LDLR-211ENST00000560173 KIF3BO15066 747 aa14.37□□□□□ -0.11
LDLR-211ENST00000560173 EIF2AK4Q9P2K8 1649 aaKnown RBP14.37□□□□□ -0.11
LDLR-211ENST00000560173 STRCQ7RTU9 1775 aa14.37□□□□□ -0.11
LDLR-211ENST00000560173 PTPRKQ15262 1439 aa14.36□□□□□ -0.11
LDLR-211ENST00000560173 NCOA1Q15788 1441 aa14.36□□□□□ -0.11
LDLR-211ENST00000560173 GGT6Q6P531 493 aa14.36□□□□□ -0.11
LDLR-211ENST00000560173 CHIC2Q9UKJ5 165 aa14.36□□□□□ -0.11
LDLR-211ENST00000560173 RNF17Q9BXT8 1623 aaKnown RBP14.36□□□□□ -0.11
LDLR-211ENST00000560173 ERBINQ96RT1 1412 aa14.35□□□□□ -0.11
LDLR-211ENST00000560173 ESF1Q9H501 851 aaKnown RBP14.35□□□□□ -0.11
LDLR-211ENST00000560173 RRP7BPQ9NSQ0 103 aa14.35□□□□□ -0.11
LDLR-211ENST00000560173 PPP6R1Q9UPN7 881 aa14.35□□□□□ -0.11
LDLR-211ENST00000560173 FAM135AQ9P2D6 1515 aa14.35□□□□□ -0.11
LDLR-211ENST00000560173 MROH2AA6NES4 1674 aa14.34□□□□□ -0.11
LDLR-211ENST00000560173 CLTCQ00610 1675 aaKnown RBP14.33□□□□□ -0.11
LDLR-211ENST00000560173 CEBPAP49715 358 aaPredicted RBP14.33□□□□□ -0.12
LDLR-211ENST00000560173 MROH1Q8NDA8 1641 aa14.33□□□□□ -0.12
LDLR-211ENST00000560173 C3P01024 1663 aa14.33□□□□□ -0.12
LDLR-211ENST00000560173 KDM5DQ9BY66 1539 aa14.32□□□□□ -0.12
LDLR-211ENST00000560173 ROCK1Q13464 1354 aa14.32□□□□□ -0.12
LDLR-211ENST00000560173 ZMYM3Q14202 1370 aa14.31□□□□□ -0.12
LDLR-211ENST00000560173 ABCC3O15438 1527 aa14.29□□□□□ -0.12
LDLR-211ENST00000560173 PRDM15P57071 1507 aaPredicted RBP14.29□□□□□ -0.12
LDLR-211ENST00000560173 DEPDC5O75140 1603 aa14.28□□□□□ -0.12
LDLR-211ENST00000560173 ITGAEP38570 1179 aa14.28□□□□□ -0.12
LDLR-211ENST00000560173 NPATQ14207 1427 aa14.28□□□□□ -0.12
LDLR-211ENST00000560173 ANKRD50Q9ULJ7 1429 aa14.28□□□□□ -0.12
LDLR-211ENST00000560173 WASHC2CQ9Y4E1 1318 aa14.27□□□□□ -0.12
LDLR-211ENST00000560173 ZC3H13Q5T200 1668 aaKnown RBP14.26□□□□□ -0.13
LDLR-211ENST00000560173 PZPP20742 1482 aa14.25□□□□□ -0.13
LDLR-211ENST00000560173 DMRT2Q9Y5R5 561 aa14.25□□□□□ -0.13
LDLR-211ENST00000560173 SETD1BQ9UPS6 1966 aaKnown RBP14.25□□□□□ -0.13
LDLR-211ENST00000560173 VWDEQ8N2E2 1590 aa14.24□□□□□ -0.13
LDLR-211ENST00000560173 UHRF1BP1Q6BDS2 1440 aa14.24□□□□□ -0.13
LDLR-211ENST00000560173 CEP152O94986 1710 aa14.23□□□□□ -0.13
LDLR-211ENST00000560173 CAMSAP1Q5T5Y3 1602 aa14.22□□□□□ -0.13
LDLR-211ENST00000560173 KANK1Q14678 1352 aa14.22□□□□□ -0.13
LDLR-211ENST00000560173 LMTK2Q8IWU2 1503 aa14.21□□□□□ -0.13
LDLR-211ENST00000560173 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.21□□□□□ -0.138e-6■□□□□ 8.2
LDLR-211ENST00000560173 LTBP4Q8N2S1 1624 aa14.21□□□□□ -0.13
LDLR-211ENST00000560173 UNC13BO14795 1591 aa14.21□□□□□ -0.14
LDLR-211ENST00000560173 ARHGAP31Q2M1Z3 1444 aa14.2□□□□□ -0.14
LDLR-211ENST00000560173 MYO3AQ8NEV4 1616 aa14.19□□□□□ -0.14
LDLR-211ENST00000560173 PTPRTO14522 1441 aa14.19□□□□□ -0.14
LDLR-211ENST00000560173 NAIPQ13075 1403 aa14.19□□□□□ -0.14
LDLR-211ENST00000560173 FBXO31Q5XUX0 539 aaPredicted RBP14.19□□□□□ -0.14
LDLR-211ENST00000560173 TNRQ92752 1358 aa14.19□□□□□ -0.14
LDLR-211ENST00000560173 ERVK-7P63135 1459 aa14.18□□□□□ -0.14
LDLR-211ENST00000560173 IQSEC2Q5JU85 1478 aa14.18□□□□□ -0.14
LDLR-211ENST00000560173 GCC2Q8IWJ2 1684 aa14.17□□□□□ -0.14
LDLR-211ENST00000560173 HFM1A2PYH4 1435 aa14.17□□□□□ -0.14
LDLR-211ENST00000560173 EFCAB6Q5THR3 1501 aa14.17□□□□□ -0.14
LDLR-211ENST00000560173 ZNF142P52746 1687 aaPredicted RBP14.17□□□□□ -0.14
LDLR-211ENST00000560173 CEP170BQ9Y4F5 1589 aaPredicted RBP14.16□□□□□ -0.14
LDLR-211ENST00000560173 A2ML1A8K2U0 1454 aa14.14□□□□□ -0.15
LDLR-211ENST00000560173 IQGAP3Q86VI3 1631 aa14.14□□□□□ -0.15
LDLR-211ENST00000560173 TET3O43151 1660 aa14.14□□□□□ -0.15
LDLR-211ENST00000560173 NLRP1Q9C000 1473 aa14.13□□□□□ -0.15
LDLR-211ENST00000560173 NUP155O75694 1391 aa14.12□□□□□ -0.15
LDLR-211ENST00000560173 RPRD2Q5VT52 1461 aaKnown RBP14.12□□□□□ -0.15
LDLR-211ENST00000560173 NOS1P29475 1434 aa14.1□□□□□ -0.15
LDLR-211ENST00000560173 PLA2R1Q13018 1463 aa14.09□□□□□ -0.15
LDLR-211ENST00000560173 CFAP65Q6ZU64 1925 aaKnown RBP14.09□□□□□ -0.15
LDLR-211ENST00000560173 SYNMO15061 1565 aa14.09□□□□□ -0.15
LDLR-211ENST00000560173 UGGT1Q9NYU2 1555 aa14.07□□□□□ -0.16
LDLR-211ENST00000560173 E9PCH4 1651 aa14.07□□□□□ -0.16
LDLR-211ENST00000560173 UBR1Q8IWV7 1749 aa14.04□□□□□ -0.16
LDLR-211ENST00000560173 THEMISQ8N1K5 641 aaPredicted RBP14.03□□□□□ -0.16
LDLR-211ENST00000560173 SETD5Q9C0A6 1442 aa14.03□□□□□ -0.16
LDLR-211ENST00000560173 PIK3C2BO00750 1634 aa14.03□□□□□ -0.16
LDLR-211ENST00000560173 MED1Q15648 1581 aaPredicted RBP14.02□□□□□ -0.16
LDLR-211ENST00000560173 NCKAP5LQ9HCH0 1330 aa14.02□□□□□ -0.17
LDLR-211ENST00000560173 UBAP1LF5GYI3 381 aa14.02□□□□□ -0.17
LDLR-211ENST00000560173 PKD2Q13563 968 aa14.02□□□□□ -0.17
LDLR-211ENST00000560173 IDI1Q13907 227 aa14.02□□□□□ -0.17
LDLR-211ENST00000560173 ADGRB3O60242 1522 aa14.01□□□□□ -0.17
LDLR-211ENST00000560173 TRIM52Q96A61 297 aa14.01□□□□□ -0.17
LDLR-211ENST00000560173 SLC52A1Q9NWF4 448 aa14.01□□□□□ -0.17
LDLR-211ENST00000560173 KDM5AP29375 1690 aaKnown RBP14.01□□□□□ -0.17
LDLR-211ENST00000560173 NEURL4Q96JN8 1562 aa14□□□□□ -0.17
LDLR-211ENST00000560173 ZNF335Q9H4Z2 1342 aaPredicted RBP14□□□□□ -0.17
LDLR-211ENST00000560173 SLIT1O75093 1534 aa14□□□□□ -0.17
LDLR-211ENST00000560173 ARHGAP23Q9P227 1491 aa13.99□□□□□ -0.17
LDLR-211ENST00000560173 RAB3GAP2Q9H2M9 1393 aa13.99□□□□□ -0.17
LDLR-211ENST00000560173 POLR1AO95602 1720 aaPredicted RBP13.99□□□□□ -0.17
LDLR-211ENST00000560173 SPHKAPQ2M3C7 1700 aa13.98□□□□□ -0.17
LDLR-211ENST00000560173 TRPM2O94759 1503 aa13.97□□□□□ -0.17
LDLR-211ENST00000560173 ANKLE2Q86XL3 938 aa13.97□□□□□ -0.17
LDLR-211ENST00000560173 SLC4A1APQ9BWU0 796 aaKnown RBP13.97□□□□□ -0.17
LDLR-211ENST00000560173 MED14O60244 1454 aa13.97□□□□□ -0.17
LDLR-211ENST00000560173 TMEM2Q9UHN6 1383 aa13.96□□□□□ -0.17
LDLR-211ENST00000560173 ACIN1Q9UKV3 1341 aaKnown RBP13.96□□□□□ -0.17
LDLR-211ENST00000560173 SCAF11Q99590 1463 aaKnown RBP13.96□□□□□ -0.17
LDLR-211ENST00000560173 STAG3Q9UJ98 1225 aa13.96□□□□□ -0.17
LDLR-211ENST00000560173 TMEM131LA2VDJ0 1609 aa13.95□□□□□ -0.18
LDLR-211ENST00000560173 NPHP4O75161 1426 aaPredicted RBP13.95□□□□□ -0.18
LDLR-211ENST00000560173 LTKP29376 864 aa13.93□□□□□ -0.18
LDLR-211ENST00000560173 MPHOSPH9Q99550 1183 aa13.93□□□□□ -0.18
LDLR-211ENST00000560173 CLTCL1P53675 1640 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms