RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 NISCHQ9Y2I1 1504 aa22.77■■□□□ 1.24
LDLR-211ENST00000560173 CCDC180Q9P1Z9 1646 aa20.24■□□□□ 0.83
LDLR-211ENST00000560173 ABCC9O60706 1549 aa19.95■□□□□ 0.78
LDLR-211ENST00000560173 DNAJC5BQ9UF47 199 aa19.15■□□□□ 0.66
LDLR-211ENST00000560173 RB1CC1Q8TDY2 1594 aa19.02■□□□□ 0.64
LDLR-211ENST00000560173 NACADO15069 1562 aa19.02■□□□□ 0.63
LDLR-211ENST00000560173 ZCCHC6Q5VYS8 1495 aaKnown RBP19■□□□□ 0.63
LDLR-211ENST00000560173 DCAF8L2P0C7V8 631 aa18.93■□□□□ 0.62
LDLR-211ENST00000560173 MYO15BQ96JP2 1530 aa18.93■□□□□ 0.62
LDLR-211ENST00000560173 DCAF1Q9Y4B6 1507 aa18.86■□□□□ 0.61
LDLR-211ENST00000560173 UNC13AQ9UPW8 1703 aa18.57■□□□□ 0.56
LDLR-211ENST00000560173 BICRAQ9NZM4 1560 aa18.47■□□□□ 0.55
LDLR-211ENST00000560173 SCRIBQ14160 1630 aa18.45■□□□□ 0.54
LDLR-211ENST00000560173 PABPN1Q86U42 306 aaKnown RBP eCLIP18.45■□□□□ 0.54
LDLR-211ENST00000560173 SHROOM4Q9ULL8 1493 aa18.29■□□□□ 0.52
LDLR-211ENST00000560173 CC2D2AQ9P2K1 1620 aa18.05■□□□□ 0.48
LDLR-211ENST00000560173 CECR2Q9BXF3 1484 aa18.01■□□□□ 0.47
LDLR-211ENST00000560173 EIF4G1Q04637 1599 aaKnown RBP17.96■□□□□ 0.47
LDLR-211ENST00000560173 DNAJC5Q9H3Z4 198 aa17.94■□□□□ 0.46
LDLR-211ENST00000560173 SMARCA4P51532 1647 aa17.66■□□□□ 0.42
LDLR-211ENST00000560173 BAZ1AQ9NRL2 1556 aaPredicted RBP17.65■□□□□ 0.42
LDLR-211ENST00000560173 ATAD2BQ9ULI0 1458 aa17.56■□□□□ 0.4
LDLR-211ENST00000560173 MROH2BQ7Z745 1585 aa17.55■□□□□ 0.4
LDLR-211ENST00000560173 NCAPD3P42695 1498 aa17.55■□□□□ 0.4
LDLR-211ENST00000560173 SMARCA2P51531 1590 aa17.54■□□□□ 0.4
LDLR-211ENST00000560173 PEG3Q9GZU2 1588 aa17.51■□□□□ 0.39
LDLR-211ENST00000560173 HMGXB3Q12766 1538 aa17.47■□□□□ 0.39
LDLR-211ENST00000560173 BAZ1BQ9UIG0 1483 aaKnown RBP17.41■□□□□ 0.38
LDLR-211ENST00000560173 CUX2O14529 1486 aa17.4■□□□□ 0.38
LDLR-211ENST00000560173 RSF1Q96T23 1441 aaPredicted RBP17.37■□□□□ 0.37
LDLR-211ENST00000560173 WIZO95785 1651 aa17.35■□□□□ 0.37
LDLR-211ENST00000560173 ERCC6Q03468 1493 aa17.24■□□□□ 0.35
LDLR-211ENST00000560173 TOP2AP11388 1531 aaKnown RBP17.19■□□□□ 0.34
LDLR-211ENST00000560173 NESP48681 1621 aa17.11■□□□□ 0.33
LDLR-211ENST00000560173 LAMC3Q9Y6N6 1575 aa17.06■□□□□ 0.32
LDLR-211ENST00000560173 CADPSQ9ULU8 1353 aa17.03■□□□□ 0.32
LDLR-211ENST00000560173 THOC2Q8NI27 1593 aaKnown RBP16.98■□□□□ 0.31
LDLR-211ENST00000560173 CCDC88BA6NC98 1476 aa16.98■□□□□ 0.31
LDLR-211ENST00000560173 PDS5BQ9NTI5 1447 aa16.96■□□□□ 0.3
LDLR-211ENST00000560173 CFTRP13569 1480 aa16.95■□□□□ 0.3
LDLR-211ENST00000560173 TRIM41Q8WV44 630 aa16.93■□□□□ 0.3
LDLR-211ENST00000560173 SUPT5HO00267 1087 aaKnown RBP16.9■□□□□ 0.3
LDLR-211ENST00000560173 KIF21AQ7Z4S6 1674 aa16.9■□□□□ 0.3
LDLR-211ENST00000560173 FANCD2Q9BXW9 1451 aa16.84■□□□□ 0.29
LDLR-211ENST00000560173 CEP164Q9UPV0 1460 aa16.81■□□□□ 0.28
LDLR-211ENST00000560173 MRC2Q9UBG0 1479 aa16.8■□□□□ 0.28
LDLR-211ENST00000560173 PRDM2Q13029 1718 aa16.79■□□□□ 0.28
LDLR-211ENST00000560173 WDR62O43379 1518 aa16.75■□□□□ 0.27
LDLR-211ENST00000560173 URB2Q14146 1524 aaKnown RBP16.68■□□□□ 0.26
LDLR-211ENST00000560173 TOPBP1Q92547 1522 aa16.58■□□□□ 0.24
LDLR-211ENST00000560173 ABCC8Q09428 1581 aa16.56■□□□□ 0.24
LDLR-211ENST00000560173 DNMBPQ6XZF7 1577 aa16.56■□□□□ 0.24
LDLR-211ENST00000560173 CUX1P39880 1505 aa16.47■□□□□ 0.23
LDLR-211ENST00000560173 OSCARQ8IYS5 282 aa16.47■□□□□ 0.23
LDLR-211ENST00000560173 IFT140Q96RY7 1462 aa16.47■□□□□ 0.23
LDLR-211ENST00000560173 POLA1P09884 1462 aaPredicted RBP16.44■□□□□ 0.22
LDLR-211ENST00000560173 RIMBP3CA6NJZ7 1639 aa16.42■□□□□ 0.22
LDLR-211ENST00000560173 RIMBP3BA6NNM3 1639 aa16.42■□□□□ 0.22
LDLR-211ENST00000560173 RIMBP3Q9UFD9 1639 aa16.42■□□□□ 0.22
LDLR-211ENST00000560173 FGD5Q6ZNL6 1462 aa16.41■□□□□ 0.22
LDLR-211ENST00000560173 TARBP1Q13395 1621 aaKnown RBP16.4■□□□□ 0.22
LDLR-211ENST00000560173 ZNF608Q9ULD9 1512 aaPredicted RBP16.4■□□□□ 0.22
LDLR-211ENST00000560173 WRNQ14191 1432 aaPredicted RBP eCLIP16.36■□□□□ 0.21
LDLR-211ENST00000560173 RAD54L2Q9Y4B4 1467 aa16.36■□□□□ 0.21
LDLR-211ENST00000560173 SOGA1O94964 1423 aa16.36■□□□□ 0.21
LDLR-211ENST00000560173 SYNJ1O43426 1573 aa16.34■□□□□ 0.21
LDLR-211ENST00000560173 EIF4G3O43432 1585 aaKnown RBP16.33■□□□□ 0.2
LDLR-211ENST00000560173 TOP2BQ02880 1626 aa16.33■□□□□ 0.2
LDLR-211ENST00000560173 BIVM-ERCC5R4GMW8 1640 aa16.32■□□□□ 0.2
LDLR-211ENST00000560173 AQRO60306 1485 aaKnown RBP eCLIP16.29■□□□□ 0.21e-9■■■■■ 30.5
LDLR-211ENST00000560173 WDR97A6NE52 1622 aa16.27■□□□□ 0.2
LDLR-211ENST00000560173 ARHGEF11O15085 1522 aa16.27■□□□□ 0.2
LDLR-211ENST00000560173 TDRD9Q8NDG6 1382 aaKnown RBP16.26■□□□□ 0.19
LDLR-211ENST00000560173 ABCA10Q8WWZ4 1543 aa16.25■□□□□ 0.19
LDLR-211ENST00000560173 ABCA5Q8WWZ7 1642 aa16.19■□□□□ 0.18
LDLR-211ENST00000560173 GRIN2BQ13224 1484 aa16.17■□□□□ 0.18
LDLR-211ENST00000560173 GAPVD1Q14C86 1478 aa16.17■□□□□ 0.18
LDLR-211ENST00000560173 SNAPC4Q5SXM2 1469 aa16.16■□□□□ 0.18
LDLR-211ENST00000560173 CYB5RLQ6IPT4 315 aa16.13■□□□□ 0.17
LDLR-211ENST00000560173 MAGI1Q96QZ7 1491 aaPredicted RBP16.13■□□□□ 0.17
LDLR-211ENST00000560173 PBRM1Q86U86 1689 aa16.13■□□□□ 0.17
LDLR-211ENST00000560173 CHD1O14646 1710 aa16.11■□□□□ 0.17
LDLR-211ENST00000560173 TRHP20396 242 aaPredicted RBP16.1■□□□□ 0.17
LDLR-211ENST00000560173 ARAP1Q96P48 1450 aa16.08■□□□□ 0.16
LDLR-211ENST00000560173 SYNJ2O15056 1496 aa16.07■□□□□ 0.16
LDLR-211ENST00000560173 ERICH3Q5RHP9 1530 aa16.05■□□□□ 0.16
LDLR-211ENST00000560173 FBLN2P98095 1184 aa16.05■□□□□ 0.16
LDLR-211ENST00000560173 ADAMTS12P58397 1594 aa16.04■□□□□ 0.16
LDLR-211ENST00000560173 CHMP7Q8WUX9 453 aaPredicted RBP16.02■□□□□ 0.16
LDLR-211ENST00000560173 KIF27Q86VH2 1401 aa16.02■□□□□ 0.15
LDLR-211ENST00000560173 AEBP2Q6ZN18 517 aaPredicted RBP16.01■□□□□ 0.15
LDLR-211ENST00000560173 FHAD1B1AJZ9 1412 aa16■□□□□ 0.15
LDLR-211ENST00000560173 GRIN2AQ12879 1464 aa15.97■□□□□ 0.15
LDLR-211ENST00000560173 CLASP1Q7Z460 1538 aa15.96■□□□□ 0.15
LDLR-211ENST00000560173 IGF1RP08069 1367 aa15.95■□□□□ 0.14
LDLR-211ENST00000560173 NUP160Q12769 1436 aa15.91■□□□□ 0.14
LDLR-211ENST00000560173 CUL7Q14999 1698 aa15.9■□□□□ 0.14
LDLR-211ENST00000560173 CEP170Q5SW79 1584 aa15.89■□□□□ 0.13
LDLR-211ENST00000560173 RUSC2Q8N2Y8 1516 aa15.88■□□□□ 0.13
LDLR-211ENST00000560173 CARMIL1Q5VZK9 1371 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms