RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 MPHOSPH9Q99550 1183 aa17.93■□□□□ 0.46
HERC1-205ENST00000559886 NUP155O75694 1391 aa17.93■□□□□ 0.46
HERC1-205ENST00000559886 BCORL1Q5H9F3 1711 aa17.93■□□□□ 0.46
HERC1-205ENST00000559886 IQGAP3Q86VI3 1631 aa17.9■□□□□ 0.46
HERC1-205ENST00000559886 ATP10AO60312 1499 aa17.9■□□□□ 0.46
HERC1-205ENST00000559886 SLC4A1APQ9BWU0 796 aaKnown RBP17.9■□□□□ 0.46
HERC1-205ENST00000559886 ARHGEF40Q8TER5 1519 aa17.9■□□□□ 0.46
HERC1-205ENST00000559886 REREQ9P2R6 1566 aa17.89■□□□□ 0.46
HERC1-205ENST00000559886 RNF17Q9BXT8 1623 aaKnown RBP17.89■□□□□ 0.46
HERC1-205ENST00000559886 KIF3BO15066 747 aa17.89■□□□□ 0.45
HERC1-205ENST00000559886 FAM135AQ9P2D6 1515 aa17.89■□□□□ 0.45
HERC1-205ENST00000559886 ZEB1P37275 1124 aaPredicted RBP17.89■□□□□ 0.45
HERC1-205ENST00000559886 MROH1Q8NDA8 1641 aa17.88■□□□□ 0.45
HERC1-205ENST00000559886 PRDM15P57071 1507 aaPredicted RBP17.87■□□□□ 0.45
HERC1-205ENST00000559886 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.87■□□□□ 0.452e-7■■□□□ 13.6
HERC1-205ENST00000559886 VWDEQ8N2E2 1590 aa17.86■□□□□ 0.45
HERC1-205ENST00000559886 AGLP35573 1532 aa17.83■□□□□ 0.45
HERC1-205ENST00000559886 PKD2Q13563 968 aa17.82■□□□□ 0.44
HERC1-205ENST00000559886 KANK1Q14678 1352 aa17.82■□□□□ 0.44
HERC1-205ENST00000559886 SIGLEC1Q9BZZ2 1709 aa17.82■□□□□ 0.44
HERC1-205ENST00000559886 FOXD1Q16676 465 aa17.81■□□□□ 0.44
HERC1-205ENST00000559886 TET3O43151 1660 aa17.8■□□□□ 0.44
HERC1-205ENST00000559886 ANKRD30BQ9BXX2 1392 aa17.8■□□□□ 0.44
HERC1-205ENST00000559886 GGT6Q6P531 493 aa17.78■□□□□ 0.44
HERC1-205ENST00000559886 CEP152O94986 1710 aa17.78■□□□□ 0.44
HERC1-205ENST00000559886 LMTK2Q8IWU2 1503 aa17.78■□□□□ 0.44
HERC1-205ENST00000559886 SIN3AQ96ST3 1273 aa17.77■□□□□ 0.44
HERC1-205ENST00000559886 E9PCH4 1651 aa17.77■□□□□ 0.43
HERC1-205ENST00000559886 ZC3H13Q5T200 1668 aaKnown RBP17.75■□□□□ 0.43
HERC1-205ENST00000559886 ABCC3O15438 1527 aa17.74■□□□□ 0.43
HERC1-205ENST00000559886 EFCAB6Q5THR3 1501 aa17.74■□□□□ 0.43
HERC1-205ENST00000559886 NEUROD1Q13562 356 aa17.73■□□□□ 0.43
HERC1-205ENST00000559886 WASHC2CQ9Y4E1 1318 aa17.72■□□□□ 0.43
HERC1-205ENST00000559886 CAMSAP1Q5T5Y3 1602 aa17.71■□□□□ 0.43
HERC1-205ENST00000559886 PPP6R1Q9UPN7 881 aa17.71■□□□□ 0.43
HERC1-205ENST00000559886 PLA2R1Q13018 1463 aa17.7■□□□□ 0.42
HERC1-205ENST00000559886 RPRD2Q5VT52 1461 aaKnown RBP17.7■□□□□ 0.42
HERC1-205ENST00000559886 TIMELESSQ9UNS1 1208 aa17.7■□□□□ 0.42
HERC1-205ENST00000559886 SPHKAPQ2M3C7 1700 aa17.69■□□□□ 0.42
HERC1-205ENST00000559886 PTPRTO14522 1441 aa17.67■□□□□ 0.42
HERC1-205ENST00000559886 CFAP65Q6ZU64 1925 aaKnown RBP17.66■□□□□ 0.42
HERC1-205ENST00000559886 NPATQ14207 1427 aa17.66■□□□□ 0.42
HERC1-205ENST00000559886 ARID4BQ4LE39 1312 aaPredicted RBP17.66■□□□□ 0.42
HERC1-205ENST00000559886 ARHGAP31Q2M1Z3 1444 aa17.66■□□□□ 0.42
HERC1-205ENST00000559886 TRPM2O94759 1503 aa17.65■□□□□ 0.42
HERC1-205ENST00000559886 CLTCQ00610 1675 aaKnown RBP17.65■□□□□ 0.42
HERC1-205ENST00000559886 MLECQ14165 292 aa17.64■□□□□ 0.42
HERC1-205ENST00000559886 TONSLQ96HA7 1378 aa17.64■□□□□ 0.41
HERC1-205ENST00000559886 CCDC144AA2RUR9 1427 aa17.64■□□□□ 0.41
HERC1-205ENST00000559886 CLTCL1P53675 1640 aa17.6■□□□□ 0.41
HERC1-205ENST00000559886 NOS1P29475 1434 aa17.59■□□□□ 0.41
HERC1-205ENST00000559886 PREX1Q8TCU6 1659 aa17.59■□□□□ 0.41
HERC1-205ENST00000559886 CNTLNQ9NXG0 1405 aa17.58■□□□□ 0.41
HERC1-205ENST00000559886 MROH2AA6NES4 1674 aa17.58■□□□□ 0.4
HERC1-205ENST00000559886 L3MBTL2Q969R5 705 aa17.57■□□□□ 0.4
HERC1-205ENST00000559886 ESF1Q9H501 851 aaKnown RBP17.57■□□□□ 0.4
HERC1-205ENST00000559886 PPP1R15AO75807 674 aaPredicted RBP17.57■□□□□ 0.4
HERC1-205ENST00000559886 FER1L4A9Z1Z3 1794 aa17.56■□□□□ 0.4
HERC1-205ENST00000559886 SYNMO15061 1565 aa17.56■□□□□ 0.4
HERC1-205ENST00000559886 UGGT1Q9NYU2 1555 aa17.55■□□□□ 0.4
HERC1-205ENST00000559886 KIF1BO60333 1816 aa17.55■□□□□ 0.4
HERC1-205ENST00000559886 ZMYM3Q14202 1370 aa17.55■□□□□ 0.4
HERC1-205ENST00000559886 PIK3C2BO00750 1634 aa17.54■□□□□ 0.4
HERC1-205ENST00000559886 ERVK-7P63135 1459 aa17.54■□□□□ 0.4
HERC1-205ENST00000559886 SPATA31E1Q6ZUB1 1445 aa17.53■□□□□ 0.4
HERC1-205ENST00000559886 NEURL4Q96JN8 1562 aa17.53■□□□□ 0.4
HERC1-205ENST00000559886 SPATA31D1Q6ZQQ2 1576 aa17.52■□□□□ 0.4
HERC1-205ENST00000559886 FBXO31Q5XUX0 539 aaPredicted RBP17.52■□□□□ 0.39
HERC1-205ENST00000559886 ADAMTSL3P82987 1691 aa17.5■□□□□ 0.39
HERC1-205ENST00000559886 SLC52A1Q9NWF4 448 aa17.49■□□□□ 0.39
HERC1-205ENST00000559886 C3P01024 1663 aa17.49■□□□□ 0.39
HERC1-205ENST00000559886 MADDQ8WXG6 1647 aa17.48■□□□□ 0.39
HERC1-205ENST00000559886 RGL3Q3MIN7 710 aa17.48■□□□□ 0.39
HERC1-205ENST00000559886 ADGRB3O60242 1522 aa17.47■□□□□ 0.39
HERC1-205ENST00000559886 IDI1Q13907 227 aa17.46■□□□□ 0.39
HERC1-205ENST00000559886 RIMS1Q86UR5 1692 aaKnown RBP17.45■□□□□ 0.38
HERC1-205ENST00000559886 DCAF11Q8TEB1 546 aa17.45■□□□□ 0.38
HERC1-205ENST00000559886 UHRF1BP1Q6BDS2 1440 aa17.44■□□□□ 0.38
HERC1-205ENST00000559886 IFT172Q9UG01 1749 aa17.43■□□□□ 0.38
HERC1-205ENST00000559886 MYO5BQ9ULV0 1848 aa17.43■□□□□ 0.38
HERC1-205ENST00000559886 TMEM131LA2VDJ0 1609 aa17.43■□□□□ 0.38
HERC1-205ENST00000559886 NBPF8Q3BBV2 869 aa17.43■□□□□ 0.38
HERC1-205ENST00000559886 KDM2AQ9Y2K7 1162 aa17.42■□□□□ 0.38
HERC1-205ENST00000559886 TNRQ92752 1358 aa17.42■□□□□ 0.38
HERC1-205ENST00000559886 CEBPAP49715 358 aaPredicted RBP17.41■□□□□ 0.38
HERC1-205ENST00000559886 STAC3Q96MF2 364 aa17.41■□□□□ 0.38
HERC1-205ENST00000559886 CHGAP10645 457 aaKnown RBP17.41■□□□□ 0.38
HERC1-205ENST00000559886 PPLO60437 1756 aa17.4■□□□□ 0.38
HERC1-205ENST00000559886 PRAG1Q86YV5 1406 aa17.39■□□□□ 0.37
HERC1-205ENST00000559886 RPGRIP1LQ68CZ1 1315 aa17.38■□□□□ 0.37
HERC1-205ENST00000559886 ZNF326Q5BKZ1 582 aaKnown RBP17.38■□□□□ 0.37
HERC1-205ENST00000559886 KDM5AP29375 1690 aaKnown RBP17.38■□□□□ 0.37
HERC1-205ENST00000559886 MYOM2P54296 1465 aa17.37■□□□□ 0.37
HERC1-205ENST00000559886 NLRP1Q9C000 1473 aa17.36■□□□□ 0.37
HERC1-205ENST00000559886 NEXMIFQ5QGS0 1516 aa17.36■□□□□ 0.37
HERC1-205ENST00000559886 TRPM1Q7Z4N2 1603 aa17.36■□□□□ 0.37
HERC1-205ENST00000559886 A2ML1A8K2U0 1454 aa17.35■□□□□ 0.37
HERC1-205ENST00000559886 RALGAPBQ86X10 1494 aa17.35■□□□□ 0.37
HERC1-205ENST00000559886 UBR1Q8IWV7 1749 aa17.34■□□□□ 0.37
HERC1-205ENST00000559886 STAG3Q9UJ98 1225 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms