RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 NISCHQ9Y2I1 1504 aa28.35■■■□□ 2.13
HERC1-205ENST00000559886 CCDC180Q9P1Z9 1646 aa24.91■■□□□ 1.58
HERC1-205ENST00000559886 ZCCHC6Q5VYS8 1495 aaKnown RBP23.75■■□□□ 1.39
HERC1-205ENST00000559886 ABCC9O60706 1549 aa23.72■■□□□ 1.39
HERC1-205ENST00000559886 DCAF1Q9Y4B6 1507 aa23.48■■□□□ 1.35
HERC1-205ENST00000559886 DCAF8L2P0C7V8 631 aa23.41■■□□□ 1.34
HERC1-205ENST00000559886 MYO15BQ96JP2 1530 aa23.32■■□□□ 1.32
HERC1-205ENST00000559886 NACADO15069 1562 aa23.25■■□□□ 1.31
HERC1-205ENST00000559886 RB1CC1Q8TDY2 1594 aa23.11■■□□□ 1.29
HERC1-205ENST00000559886 SHROOM4Q9ULL8 1493 aa22.82■■□□□ 1.24
HERC1-205ENST00000559886 SCRIBQ14160 1630 aa22.79■■□□□ 1.24
HERC1-205ENST00000559886 UNC13AQ9UPW8 1703 aa22.66■■□□□ 1.22
HERC1-205ENST00000559886 BICRAQ9NZM4 1560 aa22.42■■□□□ 1.18
HERC1-205ENST00000559886 PABPN1Q86U42 306 aaKnown RBP eCLIP22.29■■□□□ 1.16
HERC1-205ENST00000559886 CECR2Q9BXF3 1484 aa22.02■■□□□ 1.12
HERC1-205ENST00000559886 BAZ1AQ9NRL2 1556 aaPredicted RBP21.91■■□□□ 1.1
HERC1-205ENST00000559886 MROH2BQ7Z745 1585 aa21.87■■□□□ 1.09
HERC1-205ENST00000559886 SMARCA4P51532 1647 aa21.86■■□□□ 1.09
HERC1-205ENST00000559886 RSF1Q96T23 1441 aaPredicted RBP21.86■■□□□ 1.09
HERC1-205ENST00000559886 SUPT5HO00267 1087 aaKnown RBP21.81■■□□□ 1.08
HERC1-205ENST00000559886 EIF4G1Q04637 1599 aaKnown RBP21.75■■□□□ 1.07
HERC1-205ENST00000559886 WIZO95785 1651 aa21.68■■□□□ 1.06
HERC1-205ENST00000559886 PEG3Q9GZU2 1588 aa21.64■■□□□ 1.05
HERC1-205ENST00000559886 SMARCA2P51531 1590 aa21.56■■□□□ 1.04
HERC1-205ENST00000559886 ATAD2BQ9ULI0 1458 aa21.56■■□□□ 1.04
HERC1-205ENST00000559886 CC2D2AQ9P2K1 1620 aa21.5■■□□□ 1.03
HERC1-205ENST00000559886 TOP2AP11388 1531 aaKnown RBP21.46■■□□□ 1.03
HERC1-205ENST00000559886 NCAPD3P42695 1498 aa21.44■■□□□ 1.02
HERC1-205ENST00000559886 BAZ1BQ9UIG0 1483 aaKnown RBP21.41■■□□□ 1.02
HERC1-205ENST00000559886 HMGXB3Q12766 1538 aa21.4■■□□□ 1.02
HERC1-205ENST00000559886 CCDC88BA6NC98 1476 aa21.22■□□□□ 0.99
HERC1-205ENST00000559886 DNAJC5BQ9UF47 199 aa21.18■□□□□ 0.98
HERC1-205ENST00000559886 CFTRP13569 1480 aa20.88■□□□□ 0.93
HERC1-205ENST00000559886 CADPSQ9ULU8 1353 aa20.85■□□□□ 0.93
HERC1-205ENST00000559886 PRDM2Q13029 1718 aa20.82■□□□□ 0.92
HERC1-205ENST00000559886 LAMC3Q9Y6N6 1575 aa20.78■□□□□ 0.92
HERC1-205ENST00000559886 CHIC1Q5VXU3 224 aa20.76■□□□□ 0.91
HERC1-205ENST00000559886 NESP48681 1621 aa20.74■□□□□ 0.91
HERC1-205ENST00000559886 ABCC8Q09428 1581 aa20.66■□□□□ 0.9
HERC1-205ENST00000559886 FANCD2Q9BXW9 1451 aa20.62■□□□□ 0.89
HERC1-205ENST00000559886 PDS5BQ9NTI5 1447 aa20.59■□□□□ 0.89
HERC1-205ENST00000559886 WRNQ14191 1432 aaPredicted RBP eCLIP20.58■□□□□ 0.88
HERC1-205ENST00000559886 TRIM41Q8WV44 630 aa20.56■□□□□ 0.88
HERC1-205ENST00000559886 KIF21AQ7Z4S6 1674 aa20.54■□□□□ 0.88
HERC1-205ENST00000559886 CEP164Q9UPV0 1460 aa20.52■□□□□ 0.88
HERC1-205ENST00000559886 SYNJ1O43426 1573 aa20.51■□□□□ 0.87
HERC1-205ENST00000559886 TOP2BQ02880 1626 aa20.48■□□□□ 0.87
HERC1-205ENST00000559886 CUX1P39880 1505 aa20.48■□□□□ 0.87
HERC1-205ENST00000559886 BIVM-ERCC5R4GMW8 1640 aa20.47■□□□□ 0.87
HERC1-205ENST00000559886 DNMBPQ6XZF7 1577 aa20.4■□□□□ 0.86
HERC1-205ENST00000559886 ERCC6Q03468 1493 aa20.38■□□□□ 0.85
HERC1-205ENST00000559886 URB2Q14146 1524 aaKnown RBP20.38■□□□□ 0.85
HERC1-205ENST00000559886 TOPBP1Q92547 1522 aa20.37■□□□□ 0.85
HERC1-205ENST00000559886 MRC2Q9UBG0 1479 aa20.35■□□□□ 0.85
HERC1-205ENST00000559886 FGD5Q6ZNL6 1462 aa20.29■□□□□ 0.84
HERC1-205ENST00000559886 THOC2Q8NI27 1593 aaKnown RBP20.28■□□□□ 0.84
HERC1-205ENST00000559886 WDR62O43379 1518 aa20.27■□□□□ 0.84
HERC1-205ENST00000559886 POLA1P09884 1462 aaPredicted RBP20.24■□□□□ 0.83
HERC1-205ENST00000559886 SOGA1O94964 1423 aa20.21■□□□□ 0.83
HERC1-205ENST00000559886 RAD54L2Q9Y4B4 1467 aa20.15■□□□□ 0.82
HERC1-205ENST00000559886 RUSC2Q8N2Y8 1516 aa20.15■□□□□ 0.82
HERC1-205ENST00000559886 EEA1Q15075 1411 aa20.15■□□□□ 0.82
HERC1-205ENST00000559886 FAM9AQ8IZU1 332 aaPredicted RBP20.13■□□□□ 0.81
HERC1-205ENST00000559886 ABCA10Q8WWZ4 1543 aa20.12■□□□□ 0.81
HERC1-205ENST00000559886 CUX2O14529 1486 aa20.12■□□□□ 0.81
HERC1-205ENST00000559886 WDR97A6NE52 1622 aa20.11■□□□□ 0.81
HERC1-205ENST00000559886 TARBP1Q13395 1621 aaKnown RBP20.11■□□□□ 0.81
HERC1-205ENST00000559886 KIF27Q86VH2 1401 aa20.09■□□□□ 0.81
HERC1-205ENST00000559886 IFT140Q96RY7 1462 aa20.05■□□□□ 0.8
HERC1-205ENST00000559886 CSRNP3Q8WYN3 585 aa20.03■□□□□ 0.8
HERC1-205ENST00000559886 ABCA5Q8WWZ7 1642 aa20■□□□□ 0.79
HERC1-205ENST00000559886 TDRD9Q8NDG6 1382 aaKnown RBP19.97■□□□□ 0.79
HERC1-205ENST00000559886 GAPVD1Q14C86 1478 aa19.95■□□□□ 0.78
HERC1-205ENST00000559886 IGF1RP08069 1367 aa19.94■□□□□ 0.78
HERC1-205ENST00000559886 ZNF608Q9ULD9 1512 aaPredicted RBP19.93■□□□□ 0.78
HERC1-205ENST00000559886 LOC105371045A0A1W2PR82 267 aa19.93■□□□□ 0.78
HERC1-205ENST00000559886 KIF21BO75037 1637 aa19.91■□□□□ 0.78
HERC1-205ENST00000559886 AQRO60306 1485 aaKnown RBP eCLIP19.9■□□□□ 0.783e-6■■■□□ 16.3
HERC1-205ENST00000559886 ERICH3Q5RHP9 1530 aa19.89■□□□□ 0.78
HERC1-205ENST00000559886 EIF4G3O43432 1585 aaKnown RBP19.89■□□□□ 0.77
HERC1-205ENST00000559886 PRXQ9BXM0 1461 aa19.89■□□□□ 0.77
HERC1-205ENST00000559886 PBRM1Q86U86 1689 aa19.88■□□□□ 0.77
HERC1-205ENST00000559886 CUL7Q14999 1698 aa19.85■□□□□ 0.77
HERC1-205ENST00000559886 GRIN2BQ13224 1484 aa19.84■□□□□ 0.77
HERC1-205ENST00000559886 GOLGA3Q08378 1498 aa19.83■□□□□ 0.77
HERC1-205ENST00000559886 CARMIL1Q5VZK9 1371 aa19.83■□□□□ 0.76
HERC1-205ENST00000559886 EHMT2Q96KQ7 1210 aa19.82■□□□□ 0.76
HERC1-205ENST00000559886 RAPGEF2Q9Y4G8 1499 aa19.82■□□□□ 0.76
HERC1-205ENST00000559886 ADAMTS12P58397 1594 aa19.75■□□□□ 0.75
HERC1-205ENST00000559886 FHAD1B1AJZ9 1412 aa19.73■□□□□ 0.75
HERC1-205ENST00000559886 SNAPC4Q5SXM2 1469 aa19.73■□□□□ 0.75
HERC1-205ENST00000559886 UBTFP17480 764 aaKnown RBP19.73■□□□□ 0.75
HERC1-205ENST00000559886 MAGI1Q96QZ7 1491 aaPredicted RBP19.72■□□□□ 0.75
HERC1-205ENST00000559886 TNIKQ9UKE5 1360 aa19.72■□□□□ 0.75
HERC1-205ENST00000559886 SYNJ2O15056 1496 aa19.63■□□□□ 0.73
HERC1-205ENST00000559886 CTTNBP2Q8WZ74 1663 aa19.59■□□□□ 0.73
HERC1-205ENST00000559886 GRIN2AQ12879 1464 aa19.59■□□□□ 0.73
HERC1-205ENST00000559886 CEP162Q5TB80 1403 aa19.58■□□□□ 0.72
HERC1-205ENST00000559886 CHMP7Q8WUX9 453 aaPredicted RBP19.57■□□□□ 0.72
HERC1-205ENST00000559886 CHD1O14646 1710 aa19.53■□□□□ 0.72
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