RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 SHANK2Q9UPX8 1470 aa22.01■■□□□ 1.11
SHMT2-232ENST00000557487 KDM5DQ9BY66 1539 aa21.99■■□□□ 1.11
SHMT2-232ENST00000557487 KIF15Q9NS87 1388 aa21.97■■□□□ 1.11
SHMT2-232ENST00000557487 ANKRD50Q9ULJ7 1429 aa21.97■■□□□ 1.11
SHMT2-232ENST00000557487 PLEKHD1A6NEE1 506 aa21.96■■□□□ 1.11
SHMT2-232ENST00000557487 PKD2Q13563 968 aa21.95■■□□□ 1.1
SHMT2-232ENST00000557487 PNISRQ8TF01 805 aaKnown RBP21.95■■□□□ 1.1
SHMT2-232ENST00000557487 MAP3K4Q9Y6R4 1608 aa21.94■■□□□ 1.1
SHMT2-232ENST00000557487 BRD4O60885 1362 aaPredicted RBP21.94■■□□□ 1.1
SHMT2-232ENST00000557487 NOP58Q9Y2X3 529 aaKnown RBP21.93■■□□□ 1.1
SHMT2-232ENST00000557487 LRPPRCP42704 1394 aaKnown RBP21.93■■□□□ 1.1
SHMT2-232ENST00000557487 RALBP1Q15311 655 aa21.92■■□□□ 1.1
SHMT2-232ENST00000557487 CCDC136Q96JN2 1154 aa21.92■■□□□ 1.1
SHMT2-232ENST00000557487 TMC1Q8TDI8 760 aa21.9■■□□□ 1.1
SHMT2-232ENST00000557487 MYBBP1AQ9BQG0 1328 aaKnown RBP21.88■■□□□ 1.09
SHMT2-232ENST00000557487 CD109Q6YHK3 1445 aa21.88■■□□□ 1.09
SHMT2-232ENST00000557487 PPRC1Q5VV67 1664 aaKnown RBP21.88■■□□□ 1.09
SHMT2-232ENST00000557487 ABCA9Q8IUA7 1624 aa21.87■■□□□ 1.09
SHMT2-232ENST00000557487 ANP32AP39687 249 aaKnown RBP21.86■■□□□ 1.09
SHMT2-232ENST00000557487 CARD11Q9BXL7 1154 aa21.86■■□□□ 1.09
SHMT2-232ENST00000557487 C9orf84Q5VXU9 1444 aa21.86■■□□□ 1.09
SHMT2-232ENST00000557487 E9PCH4 1651 aa21.86■■□□□ 1.09
SHMT2-232ENST00000557487 NUP155O75694 1391 aa21.85■■□□□ 1.09
SHMT2-232ENST00000557487 TSPOAP1O95153 1857 aa21.84■■□□□ 1.09
SHMT2-232ENST00000557487 CDC42BPAQ5VT25 1732 aa21.84■■□□□ 1.09
SHMT2-232ENST00000557487 INSRP06213 1382 aa21.83■■□□□ 1.09
SHMT2-232ENST00000557487 ARHGEF5Q12774 1597 aa21.83■■□□□ 1.09
SHMT2-232ENST00000557487 ZNF326Q5BKZ1 582 aaKnown RBP21.83■■□□□ 1.09
SHMT2-232ENST00000557487 PDE3BQ13370 1112 aa21.82■■□□□ 1.08
SHMT2-232ENST00000557487 IPO9Q96P70 1041 aaKnown RBP21.81■■□□□ 1.08
SHMT2-232ENST00000557487 ZMYM4Q5VZL5 1548 aa21.81■■□□□ 1.08
SHMT2-232ENST00000557487 POLR3GLQ9BT43 218 aa21.8■■□□□ 1.08
SHMT2-232ENST00000557487 ZNF777Q9ULD5 760 aaPredicted RBP21.8■■□□□ 1.08
SHMT2-232ENST00000557487 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.78■■□□□ 1.08
SHMT2-232ENST00000557487 TSPY4P0CV99 314 aa21.78■■□□□ 1.08
SHMT2-232ENST00000557487 TSPY10P0CW01 314 aa21.78■■□□□ 1.08
SHMT2-232ENST00000557487 WASHC2CQ9Y4E1 1318 aa21.77■■□□□ 1.07
SHMT2-232ENST00000557487 RRP1P56182 461 aaKnown RBP21.75■■□□□ 1.07
SHMT2-232ENST00000557487 NLRP13Q86W25 1043 aa21.75■■□□□ 1.07
SHMT2-232ENST00000557487 ST20-MTHFSA0A0A6YYL1 179 aa21.74■■□□□ 1.07
SHMT2-232ENST00000557487 DEKP35659 375 aaKnown RBP21.74■■□□□ 1.07
SHMT2-232ENST00000557487 PARD3Q8TEW0 1356 aa21.74■■□□□ 1.07
SHMT2-232ENST00000557487 LAMC1P11047 1609 aa21.74■■□□□ 1.07
SHMT2-232ENST00000557487 TCERG1O14776 1098 aaKnown RBP21.74■■□□□ 1.07
SHMT2-232ENST00000557487 RSPH4AQ5TD94 716 aa21.74■■□□□ 1.07
SHMT2-232ENST00000557487 TTC37Q6PGP7 1564 aa21.72■■□□□ 1.07
SHMT2-232ENST00000557487 ZBTB47Q9UFB7 747 aaPredicted RBP21.72■■□□□ 1.07
SHMT2-232ENST00000557487 NEO1Q92859 1461 aa21.71■■□□□ 1.07
SHMT2-232ENST00000557487 TRPM1Q7Z4N2 1603 aa21.71■■□□□ 1.07
SHMT2-232ENST00000557487 GPRASP1Q5JY77 1395 aa21.7■■□□□ 1.07
SHMT2-232ENST00000557487 COL17A1Q9UMD9 1497 aaPredicted RBP21.7■■□□□ 1.07
SHMT2-232ENST00000557487 RCAN3Q9UKA8 241 aa21.7■■□□□ 1.06
SHMT2-232ENST00000557487 PLCH2O75038 1416 aa21.7■■□□□ 1.06
SHMT2-232ENST00000557487 PRAG1Q86YV5 1406 aa21.7■■□□□ 1.06
SHMT2-232ENST00000557487 MS4A1P11836 297 aa21.69■■□□□ 1.06
SHMT2-232ENST00000557487 DCAF11Q8TEB1 546 aa21.69■■□□□ 1.06
SHMT2-232ENST00000557487 FAM135AQ9P2D6 1515 aa21.69■■□□□ 1.06
SHMT2-232ENST00000557487 PAK3O75914 559 aaPredicted RBP21.68■■□□□ 1.06
SHMT2-232ENST00000557487 CCDC141Q6ZP82 1450 aa21.68■■□□□ 1.06
SHMT2-232ENST00000557487 ARAP3Q8WWN8 1544 aa21.67■■□□□ 1.06
SHMT2-232ENST00000557487 PLEKHH2Q8IVE3 1493 aa21.67■■□□□ 1.06
SHMT2-232ENST00000557487 CCDC144AA2RUR9 1427 aa21.65■■□□□ 1.06
SHMT2-232ENST00000557487 FANCAO15360 1455 aa21.64■■□□□ 1.06
SHMT2-232ENST00000557487 MAST1Q9Y2H9 1570 aa21.64■■□□□ 1.05
SHMT2-232ENST00000557487 EIF2AK4Q9P2K8 1649 aaKnown RBP21.64■■□□□ 1.05
SHMT2-232ENST00000557487 CNGB1Q14028 1251 aaPredicted RBP21.64■■□□□ 1.05
SHMT2-232ENST00000557487 RTL5Q5HYW3 569 aaPredicted RBP21.64■■□□□ 1.05
SHMT2-232ENST00000557487 KDM2AQ9Y2K7 1162 aa21.64■■□□□ 1.05
SHMT2-232ENST00000557487 UNC13BO14795 1591 aa21.63■■□□□ 1.05
SHMT2-232ENST00000557487 BLMP54132 1417 aaPredicted RBP21.62■■□□□ 1.05
SHMT2-232ENST00000557487 CFAP74Q9C0B2 1584 aa21.62■■□□□ 1.05
SHMT2-232ENST00000557487 PREX2Q70Z35 1606 aa21.61■■□□□ 1.05
SHMT2-232ENST00000557487 PRDM15P57071 1507 aaPredicted RBP21.61■■□□□ 1.05
SHMT2-232ENST00000557487 MYO5CQ9NQX4 1742 aa21.61■■□□□ 1.05
SHMT2-232ENST00000557487 PER1O15534 1290 aaPredicted RBP21.61■■□□□ 1.05
SHMT2-232ENST00000557487 EFCAB2Q5VUJ9 269 aa21.6■■□□□ 1.05
SHMT2-232ENST00000557487 EXOC6Q8TAG9 804 aa21.59■■□□□ 1.05
SHMT2-232ENST00000557487 SAMD9LQ8IVG5 1584 aa21.59■■□□□ 1.05
SHMT2-232ENST00000557487 NBR1Q14596 966 aa21.57■■□□□ 1.04
SHMT2-232ENST00000557487 USP35Q9P2H5 1018 aa21.57■■□□□ 1.04
SHMT2-232ENST00000557487 ATP10AO60312 1499 aa21.56■■□□□ 1.04
SHMT2-232ENST00000557487 HNRNPMP52272 730 aaKnown RBP eCLIP21.55■■□□□ 1.04
SHMT2-232ENST00000557487 PDE4AP27815 886 aa21.55■■□□□ 1.04
SHMT2-232ENST00000557487 BACH2Q9BYV9 841 aa21.55■■□□□ 1.04
SHMT2-232ENST00000557487 A2MP01023 1474 aa21.54■■□□□ 1.04
SHMT2-232ENST00000557487 ARHGAP5Q13017 1502 aa21.54■■□□□ 1.04
SHMT2-232ENST00000557487 IQGAP3Q86VI3 1631 aa21.54■■□□□ 1.04
SHMT2-232ENST00000557487 PLXNC1O60486 1568 aa21.54■■□□□ 1.04
SHMT2-232ENST00000557487 CDC42BPBQ9Y5S2 1711 aa21.54■■□□□ 1.04
SHMT2-232ENST00000557487 ERBINQ96RT1 1412 aa21.52■■□□□ 1.04
SHMT2-232ENST00000557487 ADGRL1O94910 1474 aa21.52■■□□□ 1.03
SHMT2-232ENST00000557487 RAPGEF3O95398 923 aa21.51■■□□□ 1.03
SHMT2-232ENST00000557487 PLA2R1Q13018 1463 aa21.51■■□□□ 1.03
SHMT2-232ENST00000557487 TESK2Q96S53 571 aa21.51■■□□□ 1.03
SHMT2-232ENST00000557487 SCAPERQ9BY12 1400 aa21.5■■□□□ 1.03
SHMT2-232ENST00000557487 TMF1P82094 1093 aa21.5■■□□□ 1.03
SHMT2-232ENST00000557487 FRMPD1Q5SYB0 1578 aa21.49■■□□□ 1.03
SHMT2-232ENST00000557487 DDRGK1Q96HY6 314 aa21.48■■□□□ 1.03
SHMT2-232ENST00000557487 MAGI2Q86UL8 1455 aa21.48■■□□□ 1.03
SHMT2-232ENST00000557487 PPM1GO15355 546 aaPredicted RBP21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms