RNA–Protein interactions for RNA: ENST00000555317.5

SRP54-206, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 644 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-206ENST00000555317 FAM135AQ9P2D6 1515 aa18.5■□□□□ 0.55
SRP54-206ENST00000555317 PREX1Q8TCU6 1659 aa18.5■□□□□ 0.55
SRP54-206ENST00000555317 ERBINQ96RT1 1412 aa18.49■□□□□ 0.55
SRP54-206ENST00000555317 KDM5DQ9BY66 1539 aa18.49■□□□□ 0.55
SRP54-206ENST00000555317 RNF17Q9BXT8 1623 aaKnown RBP18.49■□□□□ 0.55
SRP54-206ENST00000555317 ZMYM3Q14202 1370 aa18.48■□□□□ 0.55
SRP54-206ENST00000555317 WASHC2CQ9Y4E1 1318 aa18.48■□□□□ 0.55
SRP54-206ENST00000555317 ADGRL2O95490 1459 aa18.46■□□□□ 0.55
SRP54-206ENST00000555317 LMTK3Q96Q04 1460 aa18.46■□□□□ 0.55
SRP54-206ENST00000555317 NCOA1Q15788 1441 aa18.46■□□□□ 0.55
SRP54-206ENST00000555317 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.45■□□□□ 0.54
SRP54-206ENST00000555317 ITGAEP38570 1179 aa18.45■□□□□ 0.54
SRP54-206ENST00000555317 UHRF1BP1Q6BDS2 1440 aa18.45■□□□□ 0.54
SRP54-206ENST00000555317 ZC3H13Q5T200 1668 aaKnown RBP18.44■□□□□ 0.54
SRP54-206ENST00000555317 NPATQ14207 1427 aa18.43■□□□□ 0.54
SRP54-206ENST00000555317 KANK1Q14678 1352 aa18.42■□□□□ 0.54
SRP54-206ENST00000555317 RRBP1Q9P2E9 1410 aaKnown RBP18.41■□□□□ 0.54
SRP54-206ENST00000555317 ABCC3O15438 1527 aa18.39■□□□□ 0.54
SRP54-206ENST00000555317 PRDM15P57071 1507 aaPredicted RBP18.39■□□□□ 0.54
SRP54-206ENST00000555317 MROH1Q8NDA8 1641 aa18.39■□□□□ 0.53
SRP54-206ENST00000555317 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.39■□□□□ 0.53
SRP54-206ENST00000555317 CEP152O94986 1710 aa18.39■□□□□ 0.53
SRP54-206ENST00000555317 ROCK1Q13464 1354 aa18.39■□□□□ 0.53
SRP54-206ENST00000555317 PTPRKQ15262 1439 aa18.39■□□□□ 0.53
SRP54-206ENST00000555317 ANKRD50Q9ULJ7 1429 aa18.39■□□□□ 0.53
SRP54-206ENST00000555317 HSPA2P54652 639 aa18.38■□□□□ 0.53
SRP54-206ENST00000555317 PZPP20742 1482 aa18.38■□□□□ 0.53
SRP54-206ENST00000555317 DEPDC5O75140 1603 aa18.38■□□□□ 0.53
SRP54-206ENST00000555317 MYO3AQ8NEV4 1616 aa18.36■□□□□ 0.53
SRP54-206ENST00000555317 CAMSAP1Q5T5Y3 1602 aa18.35■□□□□ 0.53
SRP54-206ENST00000555317 TNRQ92752 1358 aa18.33■□□□□ 0.53
SRP54-206ENST00000555317 CFAP65Q6ZU64 1925 aaKnown RBP18.32■□□□□ 0.52
SRP54-206ENST00000555317 ZNF142P52746 1687 aaPredicted RBP18.31■□□□□ 0.52
SRP54-206ENST00000555317 FBXO31Q5XUX0 539 aaPredicted RBP18.31■□□□□ 0.52
SRP54-206ENST00000555317 CEP170BQ9Y4F5 1589 aaPredicted RBP18.3■□□□□ 0.52
SRP54-206ENST00000555317 A2ML1A8K2U0 1454 aa18.27■□□□□ 0.52
SRP54-206ENST00000555317 UNC13BO14795 1591 aa18.27■□□□□ 0.52
SRP54-206ENST00000555317 VWDEQ8N2E2 1590 aa18.27■□□□□ 0.52
SRP54-206ENST00000555317 LMTK2Q8IWU2 1503 aa18.27■□□□□ 0.51
SRP54-206ENST00000555317 ERVK-7P63135 1459 aa18.26■□□□□ 0.51
SRP54-206ENST00000555317 SPATA31D1Q6ZQQ2 1576 aa18.26■□□□□ 0.51
SRP54-206ENST00000555317 ARHGAP31Q2M1Z3 1444 aa18.26■□□□□ 0.51
SRP54-206ENST00000555317 NLRP1Q9C000 1473 aa18.26■□□□□ 0.51
SRP54-206ENST00000555317 EFCAB6Q5THR3 1501 aa18.24■□□□□ 0.51
SRP54-206ENST00000555317 DMRT2Q9Y5R5 561 aa18.24■□□□□ 0.51
SRP54-206ENST00000555317 GCC2Q8IWJ2 1684 aa18.24■□□□□ 0.51
SRP54-206ENST00000555317 TET3O43151 1660 aa18.22■□□□□ 0.51
SRP54-206ENST00000555317 STRCQ7RTU9 1775 aa18.22■□□□□ 0.51
SRP54-206ENST00000555317 NUP155O75694 1391 aa18.21■□□□□ 0.51
SRP54-206ENST00000555317 IQGAP3Q86VI3 1631 aa18.2■□□□□ 0.5
SRP54-206ENST00000555317 NAIPQ13075 1403 aa18.2■□□□□ 0.5
SRP54-206ENST00000555317 UGGT1Q9NYU2 1555 aa18.2■□□□□ 0.5
SRP54-206ENST00000555317 PLA2R1Q13018 1463 aa18.2■□□□□ 0.5
SRP54-206ENST00000555317 HFM1A2PYH4 1435 aa18.19■□□□□ 0.5
SRP54-206ENST00000555317 RPRD2Q5VT52 1461 aaKnown RBP18.19■□□□□ 0.5
SRP54-206ENST00000555317 THEMISQ8N1K5 641 aaPredicted RBP18.18■□□□□ 0.5
SRP54-206ENST00000555317 PKD2Q13563 968 aa18.17■□□□□ 0.5
SRP54-206ENST00000555317 STAG3Q9UJ98 1225 aa18.16■□□□□ 0.5
SRP54-206ENST00000555317 POLR1AO95602 1720 aaPredicted RBP18.15■□□□□ 0.5
SRP54-206ENST00000555317 PTPRTO14522 1441 aa18.15■□□□□ 0.5
SRP54-206ENST00000555317 NCKAP5LQ9HCH0 1330 aa18.14■□□□□ 0.49
SRP54-206ENST00000555317 E9PCH4 1651 aa18.13■□□□□ 0.49
SRP54-206ENST00000555317 TRIM52Q96A61 297 aa18.13■□□□□ 0.49
SRP54-206ENST00000555317 SYNMO15061 1565 aa18.13■□□□□ 0.49
SRP54-206ENST00000555317 UBR1Q8IWV7 1749 aa18.12■□□□□ 0.49
SRP54-206ENST00000555317 ANKLE2Q86XL3 938 aa18.12■□□□□ 0.49
SRP54-206ENST00000555317 NOS1P29475 1434 aa18.12■□□□□ 0.49
SRP54-206ENST00000555317 PIK3C2BO00750 1634 aa18.12■□□□□ 0.49
SRP54-206ENST00000555317 SLC52A1Q9NWF4 448 aa18.1■□□□□ 0.49
SRP54-206ENST00000555317 KDM5AP29375 1690 aaKnown RBP18.08■□□□□ 0.48
SRP54-206ENST00000555317 IDI1Q13907 227 aa18.07■□□□□ 0.48
SRP54-206ENST00000555317 ADGRB3O60242 1522 aa18.07■□□□□ 0.48
SRP54-206ENST00000555317 EID1Q9Y6B2 187 aa18.06■□□□□ 0.48
SRP54-206ENST00000555317 SPHKAPQ2M3C7 1700 aa18.05■□□□□ 0.48
SRP54-206ENST00000555317 NEURL4Q96JN8 1562 aa18.04■□□□□ 0.48
SRP54-206ENST00000555317 ACIN1Q9UKV3 1341 aaKnown RBP18.04■□□□□ 0.48
SRP54-206ENST00000555317 SLIT1O75093 1534 aa18.03■□□□□ 0.48
SRP54-206ENST00000555317 IQGAP1P46940 1657 aa18.03■□□□□ 0.48
SRP54-206ENST00000555317 SCAF11Q99590 1463 aaKnown RBP18.03■□□□□ 0.48
SRP54-206ENST00000555317 CHGAP10645 457 aaKnown RBP18.03■□□□□ 0.48
SRP54-206ENST00000555317 SLC4A1APQ9BWU0 796 aaKnown RBP18.03■□□□□ 0.48
SRP54-206ENST00000555317 NPHP4O75161 1426 aaPredicted RBP18.03■□□□□ 0.48
SRP54-206ENST00000555317 SETD5Q9C0A6 1442 aa18.03■□□□□ 0.48
SRP54-206ENST00000555317 TXNDC2Q86VQ3 553 aa18.02■□□□□ 0.48
SRP54-206ENST00000555317 TMEM2Q9UHN6 1383 aa18.02■□□□□ 0.47
SRP54-206ENST00000555317 MED14O60244 1454 aa18.01■□□□□ 0.47
SRP54-206ENST00000555317 ARHGAP23Q9P227 1491 aa18.01■□□□□ 0.47
SRP54-206ENST00000555317 MYO5BQ9ULV0 1848 aa18■□□□□ 0.47
SRP54-206ENST00000555317 HDGFP51858 240 aaKnown RBP17.98■□□□□ 0.47
SRP54-206ENST00000555317 CERKQ8TCT0 537 aa17.98■□□□□ 0.47
SRP54-206ENST00000555317 TMEM131LA2VDJ0 1609 aa17.98■□□□□ 0.47
SRP54-206ENST00000555317 PPP1R15AO75807 674 aaPredicted RBP17.97■□□□□ 0.47
SRP54-206ENST00000555317 TRPM2O94759 1503 aa17.97■□□□□ 0.47
SRP54-206ENST00000555317 ZNF335Q9H4Z2 1342 aaPredicted RBP17.97■□□□□ 0.47
SRP54-206ENST00000555317 LTKP29376 864 aa17.96■□□□□ 0.47
SRP54-206ENST00000555317 RAB3GAP2Q9H2M9 1393 aa17.95■□□□□ 0.46
SRP54-206ENST00000555317 BCANQ96GW7 911 aa17.95■□□□□ 0.46
SRP54-206ENST00000555317 SENP3Q9H4L4 574 aaPredicted RBP17.95■□□□□ 0.46
SRP54-206ENST00000555317 RIMS2Q9UQ26 1411 aa17.94■□□□□ 0.46
SRP54-206ENST00000555317 LTBP4Q8N2S1 1624 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms