RNA–Protein interactions for RNA: ENST00000555317.5

SRP54-206, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 644 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-206ENST00000555317 NISCHQ9Y2I1 1504 aa29.27■■■□□ 2.28
SRP54-206ENST00000555317 CCDC180Q9P1Z9 1646 aa26.09■■□□□ 1.77
SRP54-206ENST00000555317 ABCC9O60706 1549 aa25.53■■□□□ 1.68
SRP54-206ENST00000555317 RB1CC1Q8TDY2 1594 aa24.59■■□□□ 1.53
SRP54-206ENST00000555317 DCAF8L2P0C7V8 631 aa24.55■■□□□ 1.52
SRP54-206ENST00000555317 NACADO15069 1562 aa24.53■■□□□ 1.52
SRP54-206ENST00000555317 ZCCHC6Q5VYS8 1495 aaKnown RBP24.38■■□□□ 1.49
SRP54-206ENST00000555317 MYO15BQ96JP2 1530 aa24.33■■□□□ 1.49
SRP54-206ENST00000555317 DCAF1Q9Y4B6 1507 aa24.21■■□□□ 1.47
SRP54-206ENST00000555317 UNC13AQ9UPW8 1703 aa23.99■■□□□ 1.43
SRP54-206ENST00000555317 PABPN1Q86U42 306 aaKnown RBP eCLIP23.84■■□□□ 1.41
SRP54-206ENST00000555317 SCRIBQ14160 1630 aa23.81■■□□□ 1.4
SRP54-206ENST00000555317 BICRAQ9NZM4 1560 aa23.75■■□□□ 1.39
SRP54-206ENST00000555317 SHROOM4Q9ULL8 1493 aa23.58■■□□□ 1.37
SRP54-206ENST00000555317 DNAJC5BQ9UF47 199 aa23.35■■□□□ 1.33
SRP54-206ENST00000555317 EIF4G1Q04637 1599 aaKnown RBP23.18■■□□□ 1.3
SRP54-206ENST00000555317 CC2D2AQ9P2K1 1620 aa23.1■■□□□ 1.29
SRP54-206ENST00000555317 CECR2Q9BXF3 1484 aa22.96■■□□□ 1.27
SRP54-206ENST00000555317 SMARCA4P51532 1647 aa22.75■■□□□ 1.23
SRP54-206ENST00000555317 BAZ1AQ9NRL2 1556 aaPredicted RBP22.73■■□□□ 1.23
SRP54-206ENST00000555317 SMARCA2P51531 1590 aa22.63■■□□□ 1.21
SRP54-206ENST00000555317 ATAD2BQ9ULI0 1458 aa22.6■■□□□ 1.21
SRP54-206ENST00000555317 NCAPD3P42695 1498 aa22.58■■□□□ 1.2
SRP54-206ENST00000555317 MROH2BQ7Z745 1585 aa22.55■■□□□ 1.2
SRP54-206ENST00000555317 HMGXB3Q12766 1538 aa22.52■■□□□ 1.19
SRP54-206ENST00000555317 PEG3Q9GZU2 1588 aa22.49■■□□□ 1.19
SRP54-206ENST00000555317 BAZ1BQ9UIG0 1483 aaKnown RBP22.47■■□□□ 1.19
SRP54-206ENST00000555317 WIZO95785 1651 aa22.33■■□□□ 1.17
SRP54-206ENST00000555317 RSF1Q96T23 1441 aaPredicted RBP22.28■■□□□ 1.16
SRP54-206ENST00000555317 TOP2AP11388 1531 aaKnown RBP22.11■■□□□ 1.13
SRP54-206ENST00000555317 ERCC6Q03468 1493 aa22.09■■□□□ 1.13
SRP54-206ENST00000555317 NESP48681 1621 aa22.06■■□□□ 1.12
SRP54-206ENST00000555317 LAMC3Q9Y6N6 1575 aa22.04■■□□□ 1.12
SRP54-206ENST00000555317 CADPSQ9ULU8 1353 aa21.95■■□□□ 1.1
SRP54-206ENST00000555317 PDS5BQ9NTI5 1447 aa21.91■■□□□ 1.1
SRP54-206ENST00000555317 KIF21AQ7Z4S6 1674 aa21.85■■□□□ 1.09
SRP54-206ENST00000555317 CCDC88BA6NC98 1476 aa21.82■■□□□ 1.08
SRP54-206ENST00000555317 CUX2O14529 1486 aa21.81■■□□□ 1.08
SRP54-206ENST00000555317 CFTRP13569 1480 aa21.8■■□□□ 1.08
SRP54-206ENST00000555317 SUPT5HO00267 1087 aaKnown RBP21.77■■□□□ 1.08
SRP54-206ENST00000555317 THOC2Q8NI27 1593 aaKnown RBP21.75■■□□□ 1.07
SRP54-206ENST00000555317 PRDM2Q13029 1718 aa21.72■■□□□ 1.07
SRP54-206ENST00000555317 FANCD2Q9BXW9 1451 aa21.71■■□□□ 1.07
SRP54-206ENST00000555317 CEP164Q9UPV0 1460 aa21.71■■□□□ 1.07
SRP54-206ENST00000555317 MRC2Q9UBG0 1479 aa21.68■■□□□ 1.06
SRP54-206ENST00000555317 WDR62O43379 1518 aa21.59■■□□□ 1.05
SRP54-206ENST00000555317 URB2Q14146 1524 aaKnown RBP21.47■■□□□ 1.03
SRP54-206ENST00000555317 ABCC8Q09428 1581 aa21.39■■□□□ 1.01
SRP54-206ENST00000555317 DNMBPQ6XZF7 1577 aa21.36■■□□□ 1.01
SRP54-206ENST00000555317 TOPBP1Q92547 1522 aa21.35■■□□□ 1.01
SRP54-206ENST00000555317 IFT140Q96RY7 1462 aa21.26■□□□□ 0.99
SRP54-206ENST00000555317 POLA1P09884 1462 aaPredicted RBP21.17■□□□□ 0.98
SRP54-206ENST00000555317 CUX1P39880 1505 aa21.17■□□□□ 0.98
SRP54-206ENST00000555317 FGD5Q6ZNL6 1462 aa21.13■□□□□ 0.97
SRP54-206ENST00000555317 AEBP2Q6ZN18 517 aaPredicted RBP21.12■□□□□ 0.97
SRP54-206ENST00000555317 DNAJC5Q9H3Z4 198 aa21.12■□□□□ 0.97
SRP54-206ENST00000555317 ZNF608Q9ULD9 1512 aaPredicted RBP21.11■□□□□ 0.97
SRP54-206ENST00000555317 TARBP1Q13395 1621 aaKnown RBP21.11■□□□□ 0.97
SRP54-206ENST00000555317 SOGA1O94964 1423 aa21.09■□□□□ 0.97
SRP54-206ENST00000555317 EIF4G3O43432 1585 aaKnown RBP21.08■□□□□ 0.97
SRP54-206ENST00000555317 RAD54L2Q9Y4B4 1467 aa21.07■□□□□ 0.96
SRP54-206ENST00000555317 WRNQ14191 1432 aaPredicted RBP eCLIP21.05■□□□□ 0.96
SRP54-206ENST00000555317 AQRO60306 1485 aaKnown RBP eCLIP21.01■□□□□ 0.953e-7■■□□□ 13.3
SRP54-206ENST00000555317 TOP2BQ02880 1626 aa21■□□□□ 0.95
SRP54-206ENST00000555317 WDR97A6NE52 1622 aa21■□□□□ 0.95
SRP54-206ENST00000555317 BIVM-ERCC5R4GMW8 1640 aa21■□□□□ 0.95
SRP54-206ENST00000555317 SYNJ1O43426 1573 aa20.98■□□□□ 0.95
SRP54-206ENST00000555317 TDRD9Q8NDG6 1382 aaKnown RBP20.97■□□□□ 0.95
SRP54-206ENST00000555317 ABCA10Q8WWZ4 1543 aa20.91■□□□□ 0.94
SRP54-206ENST00000555317 OSCARQ8IYS5 282 aa20.9■□□□□ 0.94
SRP54-206ENST00000555317 GRIN2BQ13224 1484 aa20.87■□□□□ 0.93
SRP54-206ENST00000555317 GAPVD1Q14C86 1478 aa20.86■□□□□ 0.93
SRP54-206ENST00000555317 PBRM1Q86U86 1689 aa20.85■□□□□ 0.93
SRP54-206ENST00000555317 SNAPC4Q5SXM2 1469 aa20.84■□□□□ 0.93
SRP54-206ENST00000555317 FBLN2P98095 1184 aa20.84■□□□□ 0.93
SRP54-206ENST00000555317 CHD1O14646 1710 aa20.84■□□□□ 0.93
SRP54-206ENST00000555317 ABCA5Q8WWZ7 1642 aa20.83■□□□□ 0.93
SRP54-206ENST00000555317 MAGI1Q96QZ7 1491 aaPredicted RBP20.82■□□□□ 0.92
SRP54-206ENST00000555317 CHMP7Q8WUX9 453 aaPredicted RBP20.76■□□□□ 0.91
SRP54-206ENST00000555317 SYNJ2O15056 1496 aa20.73■□□□□ 0.91
SRP54-206ENST00000555317 ERICH3Q5RHP9 1530 aa20.68■□□□□ 0.9
SRP54-206ENST00000555317 ADAMTS12P58397 1594 aa20.66■□□□□ 0.9
SRP54-206ENST00000555317 KIF27Q86VH2 1401 aa20.64■□□□□ 0.89
SRP54-206ENST00000555317 FHAD1B1AJZ9 1412 aa20.61■□□□□ 0.89
SRP54-206ENST00000555317 GRIN2AQ12879 1464 aa20.59■□□□□ 0.89
SRP54-206ENST00000555317 TRIM41Q8WV44 630 aa20.57■□□□□ 0.88
SRP54-206ENST00000555317 RIMBP3CA6NJZ7 1639 aa20.56■□□□□ 0.88
SRP54-206ENST00000555317 RIMBP3BA6NNM3 1639 aa20.56■□□□□ 0.88
SRP54-206ENST00000555317 RIMBP3Q9UFD9 1639 aa20.56■□□□□ 0.88
SRP54-206ENST00000555317 ARHGEF11O15085 1522 aa20.55■□□□□ 0.88
SRP54-206ENST00000555317 CLASP1Q7Z460 1538 aa20.55■□□□□ 0.88
SRP54-206ENST00000555317 CUL7Q14999 1698 aa20.52■□□□□ 0.88
SRP54-206ENST00000555317 IGF1RP08069 1367 aa20.48■□□□□ 0.87
SRP54-206ENST00000555317 CEP170Q5SW79 1584 aa20.46■□□□□ 0.87
SRP54-206ENST00000555317 NUP160Q12769 1436 aa20.46■□□□□ 0.87
SRP54-206ENST00000555317 CARMIL1Q5VZK9 1371 aa20.41■□□□□ 0.86
SRP54-206ENST00000555317 CYB5RLQ6IPT4 315 aa20.37■□□□□ 0.85
SRP54-206ENST00000555317 ARAP1Q96P48 1450 aa20.37■□□□□ 0.85
SRP54-206ENST00000555317 RUSC2Q8N2Y8 1516 aa20.35■□□□□ 0.85
SRP54-206ENST00000555317 SHROOM2Q13796 1616 aa20.33■□□□□ 0.84
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