RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 TSPY10P0CW01 314 aa23.42■■□□□ 1.34
SYNE3-202ENST00000553340 RCAN3Q9UKA8 241 aa23.42■■□□□ 1.34
SYNE3-202ENST00000553340 EIF4G3O43432 1585 aaKnown RBP23.41■■□□□ 1.34
SYNE3-202ENST00000553340 CARMIL2Q6F5E8 1435 aa23.41■■□□□ 1.34
SYNE3-202ENST00000553340 PLEKHD1A6NEE1 506 aa23.41■■□□□ 1.34
SYNE3-202ENST00000553340 PDE3BQ13370 1112 aa23.4■■□□□ 1.34
SYNE3-202ENST00000553340 RTL5Q5HYW3 569 aaPredicted RBP23.4■■□□□ 1.34
SYNE3-202ENST00000553340 NLRP13Q86W25 1043 aa23.4■■□□□ 1.34
SYNE3-202ENST00000553340 TCERG1O14776 1098 aaKnown RBP23.4■■□□□ 1.34
SYNE3-202ENST00000553340 EXOC6Q8TAG9 804 aa23.39■■□□□ 1.34
SYNE3-202ENST00000553340 PTPRGP23470 1445 aa23.38■■□□□ 1.33
SYNE3-202ENST00000553340 CHMP7Q8WUX9 453 aaPredicted RBP23.38■■□□□ 1.33
SYNE3-202ENST00000553340 ABCC10Q5T3U5 1492 aa23.37■■□□□ 1.33
SYNE3-202ENST00000553340 MAGI1Q96QZ7 1491 aaPredicted RBP23.37■■□□□ 1.33
SYNE3-202ENST00000553340 PARD3Q8TEW0 1356 aa23.36■■□□□ 1.33
SYNE3-202ENST00000553340 SALL2Q9Y467 1007 aaPredicted RBP23.33■■□□□ 1.33
SYNE3-202ENST00000553340 SYNJ2O15056 1496 aa23.33■■□□□ 1.32
SYNE3-202ENST00000553340 JPH4Q96JJ6 628 aa23.32■■□□□ 1.32
SYNE3-202ENST00000553340 MS4A1P11836 297 aa23.3■■□□□ 1.32
SYNE3-202ENST00000553340 ARHGEF5Q12774 1597 aa23.3■■□□□ 1.32
SYNE3-202ENST00000553340 PDE4AP27815 886 aa23.29■■□□□ 1.32
SYNE3-202ENST00000553340 PRAG1Q86YV5 1406 aa23.29■■□□□ 1.32
SYNE3-202ENST00000553340 NPM2Q86SE8 214 aaKnown RBP23.29■■□□□ 1.32
SYNE3-202ENST00000553340 TRPM1Q7Z4N2 1603 aa23.29■■□□□ 1.32
SYNE3-202ENST00000553340 ATP10BO94823 1461 aa23.29■■□□□ 1.32
SYNE3-202ENST00000553340 ABCA8O94911 1581 aa23.29■■□□□ 1.32
SYNE3-202ENST00000553340 HNRNPMP52272 730 aaKnown RBP eCLIP23.29■■□□□ 1.32
SYNE3-202ENST00000553340 PER1O15534 1290 aaPredicted RBP23.28■■□□□ 1.32
SYNE3-202ENST00000553340 FAM135AQ9P2D6 1515 aa23.27■■□□□ 1.32
SYNE3-202ENST00000553340 WASHC2CQ9Y4E1 1318 aa23.27■■□□□ 1.32
SYNE3-202ENST00000553340 FBLN2P98095 1184 aa23.27■■□□□ 1.32
SYNE3-202ENST00000553340 CCDC144AA2RUR9 1427 aa23.26■■□□□ 1.31
SYNE3-202ENST00000553340 BACH2Q9BYV9 841 aa23.26■■□□□ 1.31
SYNE3-202ENST00000553340 INSRP06213 1382 aa23.25■■□□□ 1.31
SYNE3-202ENST00000553340 NUP160Q12769 1436 aa23.25■■□□□ 1.31
SYNE3-202ENST00000553340 CDCA7LQ96GN5 454 aa23.24■■□□□ 1.31
SYNE3-202ENST00000553340 ZMYM4Q5VZL5 1548 aa23.23■■□□□ 1.31
SYNE3-202ENST00000553340 GPRASP1Q5JY77 1395 aa23.23■■□□□ 1.31
SYNE3-202ENST00000553340 CCDC141Q6ZP82 1450 aa23.22■■□□□ 1.31
SYNE3-202ENST00000553340 COL17A1Q9UMD9 1497 aaPredicted RBP23.21■■□□□ 1.31
SYNE3-202ENST00000553340 NBPF1Q3BBV0 1214 aa23.21■■□□□ 1.31
SYNE3-202ENST00000553340 BLMP54132 1417 aaPredicted RBP23.2■■□□□ 1.3
SYNE3-202ENST00000553340 RGL3Q3MIN7 710 aa23.2■■□□□ 1.3
SYNE3-202ENST00000553340 RSPH4AQ5TD94 716 aa23.2■■□□□ 1.3
SYNE3-202ENST00000553340 CC2D1BQ5T0F9 858 aaKnown RBP23.19■■□□□ 1.3
SYNE3-202ENST00000553340 LAMC1P11047 1609 aa23.19■■□□□ 1.3
SYNE3-202ENST00000553340 USP35Q9P2H5 1018 aa23.17■■□□□ 1.3
SYNE3-202ENST00000553340 TESK2Q96S53 571 aa23.16■■□□□ 1.3
SYNE3-202ENST00000553340 PLEKHH2Q8IVE3 1493 aa23.16■■□□□ 1.3
SYNE3-202ENST00000553340 PRDM15P57071 1507 aaPredicted RBP23.16■■□□□ 1.3
SYNE3-202ENST00000553340 DISP3Q9P2K9 1392 aa23.16■■□□□ 1.3
SYNE3-202ENST00000553340 PLIN1O60240 522 aa23.16■■□□□ 1.3
SYNE3-202ENST00000553340 SAMD9LQ8IVG5 1584 aa23.16■■□□□ 1.3
SYNE3-202ENST00000553340 A2MP01023 1474 aa23.16■■□□□ 1.3
SYNE3-202ENST00000553340 PANK3Q9H999 370 aa23.15■■□□□ 1.3
SYNE3-202ENST00000553340 CRBNQ96SW2 442 aa23.14■■□□□ 1.29
SYNE3-202ENST00000553340 ERBINQ96RT1 1412 aa23.13■■□□□ 1.29
SYNE3-202ENST00000553340 PLA2R1Q13018 1463 aa23.13■■□□□ 1.29
SYNE3-202ENST00000553340 TMF1P82094 1093 aa23.12■■□□□ 1.29
SYNE3-202ENST00000553340 LAS1LQ9Y4W2 734 aaKnown RBP23.12■■□□□ 1.29
SYNE3-202ENST00000553340 NEFMP07197 916 aa23.12■■□□□ 1.29
SYNE3-202ENST00000553340 EIF2AK4Q9P2K8 1649 aaKnown RBP23.12■■□□□ 1.29
SYNE3-202ENST00000553340 PPM1GO15355 546 aaPredicted RBP23.12■■□□□ 1.29
SYNE3-202ENST00000553340 PREX2Q70Z35 1606 aa23.11■■□□□ 1.29
SYNE3-202ENST00000553340 CDC42BPBQ9Y5S2 1711 aa23.11■■□□□ 1.29
SYNE3-202ENST00000553340 UNC13BO14795 1591 aa23.11■■□□□ 1.29
SYNE3-202ENST00000553340 DDRGK1Q96HY6 314 aa23.1■■□□□ 1.29
SYNE3-202ENST00000553340 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.08■■□□□ 1.29
SYNE3-202ENST00000553340 ERCC6Q03468 1493 aa23.07■■□□□ 1.28
SYNE3-202ENST00000553340 MYO5CQ9NQX4 1742 aa23.07■■□□□ 1.28
SYNE3-202ENST00000553340 MAST1Q9Y2H9 1570 aa23.06■■□□□ 1.28
SYNE3-202ENST00000553340 SYCP2Q9BX26 1530 aa23.04■■□□□ 1.28
SYNE3-202ENST00000553340 IQGAP3Q86VI3 1631 aa23.04■■□□□ 1.28
SYNE3-202ENST00000553340 ADAMTS8Q9UP79 889 aa23.04■■□□□ 1.28
SYNE3-202ENST00000553340 SKAP1Q86WV1 359 aa23.01■■□□□ 1.27
SYNE3-202ENST00000553340 C20orf194Q5TEA3 1177 aa23.01■■□□□ 1.27
SYNE3-202ENST00000553340 ATP10AO60312 1499 aa23.01■■□□□ 1.27
SYNE3-202ENST00000553340 KDM2BQ8NHM5 1336 aa23■■□□□ 1.27
SYNE3-202ENST00000553340 CENPQQ7L2Z9 268 aaPredicted RBP22.99■■□□□ 1.27
SYNE3-202ENST00000553340 ARHGAP5Q13017 1502 aa22.99■■□□□ 1.27
SYNE3-202ENST00000553340 WDR43Q15061 677 aaKnown RBP eCLIP22.99■■□□□ 1.27
SYNE3-202ENST00000553340 PLXNC1O60486 1568 aa22.98■■□□□ 1.27
SYNE3-202ENST00000553340 KNSTRNQ9Y448 316 aa22.98■■□□□ 1.27
SYNE3-202ENST00000553340 DUSP27Q5VZP5 1158 aa22.97■■□□□ 1.27
SYNE3-202ENST00000553340 RNF17Q9BXT8 1623 aaKnown RBP22.97■■□□□ 1.27
SYNE3-202ENST00000553340 PPP2R1AP30153 589 aa22.96■■□□□ 1.27
SYNE3-202ENST00000553340 WDR7Q9Y4E6 1490 aa22.95■■□□□ 1.27
SYNE3-202ENST00000553340 PLEKHH1Q9ULM0 1364 aa22.95■■□□□ 1.26
SYNE3-202ENST00000553340 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.95■■□□□ 1.26
SYNE3-202ENST00000553340 MAGI2Q86UL8 1455 aa22.95■■□□□ 1.26
SYNE3-202ENST00000553340 GOLGA2Q08379 1002 aa22.94■■□□□ 1.26
SYNE3-202ENST00000553340 DUOX2Q9NRD8 1548 aa22.94■■□□□ 1.26
SYNE3-202ENST00000553340 TTC37Q6PGP7 1564 aa22.93■■□□□ 1.26
SYNE3-202ENST00000553340 ZNF521Q96K83 1311 aa22.93■■□□□ 1.26
SYNE3-202ENST00000553340 DAXXQ9UER7 740 aaPredicted RBP22.92■■□□□ 1.26
SYNE3-202ENST00000553340 CDCA8Q53HL2 280 aa22.91■■□□□ 1.26
SYNE3-202ENST00000553340 FAM161AQ3B820 660 aa22.91■■□□□ 1.26
SYNE3-202ENST00000553340 IL27Q8NEV9 243 aa22.91■■□□□ 1.26
SYNE3-202ENST00000553340 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.9■■□□□ 1.26
SYNE3-202ENST00000553340 AMER1Q5JTC6 1135 aaPredicted RBP22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms