RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 ADGRL1O94910 1474 aa11.35□□□□□ -0.59
CLIP1-218ENST00000545889 STK26Q9P289 416 aa11.35□□□□□ -0.59
CLIP1-218ENST00000545889 CFAP53Q96M91 514 aa11.34□□□□□ -0.59
CLIP1-218ENST00000545889 FANCAO15360 1455 aa11.34□□□□□ -0.59
CLIP1-218ENST00000545889 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-218ENST00000545889 MAGI3Q5TCQ9 1506 aa11.34□□□□□ -0.59
CLIP1-218ENST00000545889 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.34□□□□□ -0.59
CLIP1-218ENST00000545889 HSPA5P11021 654 aaKnown RBP11.34□□□□□ -0.59
CLIP1-218ENST00000545889 CDCA8Q53HL2 280 aa11.34□□□□□ -0.59
CLIP1-218ENST00000545889 PLEKHH2Q8IVE3 1493 aa11.34□□□□□ -0.59
CLIP1-218ENST00000545889 CCDC144AA2RUR9 1427 aa11.34□□□□□ -0.59
CLIP1-218ENST00000545889 WDR7Q9Y4E6 1490 aa11.34□□□□□ -0.59
CLIP1-218ENST00000545889 MYH16Q9H6N6 1097 aa11.33□□□□□ -0.6
CLIP1-218ENST00000545889 CCDC141Q6ZP82 1450 aa11.33□□□□□ -0.6
CLIP1-218ENST00000545889 UBE2Q2Q8WVN8 375 aa11.33□□□□□ -0.6
CLIP1-218ENST00000545889 SOX12O15370 315 aa11.32□□□□□ -0.6
CLIP1-218ENST00000545889 PODXL2Q9NZ53 605 aa11.32□□□□□ -0.6
CLIP1-218ENST00000545889 PLCH2O75038 1416 aa11.31□□□□□ -0.6
CLIP1-218ENST00000545889 NCOA1Q15788 1441 aa11.31□□□□□ -0.6
CLIP1-218ENST00000545889 CFAP43Q8NDM7 1665 aa11.31□□□□□ -0.6
CLIP1-218ENST00000545889 ERICH6BQ5W0A0 696 aa11.3□□□□□ -0.6
CLIP1-218ENST00000545889 UPF2Q9HAU5 1272 aaKnown RBP11.3□□□□□ -0.6
CLIP1-218ENST00000545889 AKNAQ7Z591 1439 aa11.29□□□□□ -0.6
CLIP1-218ENST00000545889 IRX6P78412 446 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-218ENST00000545889 HNRNPUQ00839 825 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLIP1-218ENST00000545889 SENP3-EIF4A1A0A087X0R7 540 aa11.28□□□□□ -0.6
CLIP1-218ENST00000545889 ROCK2O75116 1388 aaKnown RBP11.28□□□□□ -0.6
CLIP1-218ENST00000545889 TRAPPC8Q9Y2L5 1435 aa11.28□□□□□ -0.6
CLIP1-218ENST00000545889 ROCK1Q13464 1354 aa11.28□□□□□ -0.6
CLIP1-218ENST00000545889 KNSTRNQ9Y448 316 aa11.28□□□□□ -0.6
CLIP1-218ENST00000545889 ABCA8O94911 1581 aa11.27□□□□□ -0.6
CLIP1-218ENST00000545889 SYCP2Q9BX26 1530 aa11.27□□□□□ -0.61
CLIP1-218ENST00000545889 CSB-PGBD3P0DP91 1061 aa11.27□□□□□ -0.61
CLIP1-218ENST00000545889 IL27Q8NEV9 243 aa11.27□□□□□ -0.61
CLIP1-218ENST00000545889 NUDCQ9Y266 331 aa11.26□□□□□ -0.61
CLIP1-218ENST00000545889 MRS2Q9HD23 443 aa11.26□□□□□ -0.61
CLIP1-218ENST00000545889 PAK3O75914 559 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-218ENST00000545889 CDK11BP21127 795 aaKnown RBP11.25□□□□□ -0.61
CLIP1-218ENST00000545889 EID1Q9Y6B2 187 aa11.25□□□□□ -0.61
CLIP1-218ENST00000545889 TRAK1Q9UPV9 953 aa11.25□□□□□ -0.61
CLIP1-218ENST00000545889 DENND4BO75064 1496 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-218ENST00000545889 ANP32AP39687 249 aaKnown RBP11.24□□□□□ -0.61
CLIP1-218ENST00000545889 SRPK2P78362 688 aaKnown RBP11.24□□□□□ -0.61
CLIP1-218ENST00000545889 ST20-MTHFSA0A0A6YYL1 179 aa11.23□□□□□ -0.61
CLIP1-218ENST00000545889 GOLGA2Q08379 1002 aa11.23□□□□□ -0.61
CLIP1-218ENST00000545889 MAPK8IP3Q9UPT6 1336 aa11.23□□□□□ -0.61
CLIP1-218ENST00000545889 KIAA1107Q9UPP5 1409 aa11.22□□□□□ -0.61
CLIP1-218ENST00000545889 MSH5O43196 834 aa11.22□□□□□ -0.61
CLIP1-218ENST00000545889 LAS1LQ9Y4W2 734 aaKnown RBP11.22□□□□□ -0.61
CLIP1-218ENST00000545889 TNNT2P45379 298 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-218ENST00000545889 TMF1P82094 1093 aa11.21□□□□□ -0.61
CLIP1-218ENST00000545889 VSIG10Q8N0Z9 540 aa11.21□□□□□ -0.61
CLIP1-218ENST00000545889 NOP58Q9Y2X3 529 aaKnown RBP11.21□□□□□ -0.62
CLIP1-218ENST00000545889 KDM5BQ9UGL1 1544 aa11.21□□□□□ -0.62
CLIP1-218ENST00000545889 NBPF8Q3BBV2 869 aa11.21□□□□□ -0.62
CLIP1-218ENST00000545889 NEUROD2Q15784 382 aa11.2□□□□□ -0.62
CLIP1-218ENST00000545889 FBXO31Q5XUX0 539 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-218ENST00000545889 ITSN2Q9NZM3 1697 aa11.2□□□□□ -0.62
CLIP1-218ENST00000545889 CC2D1BQ5T0F9 858 aaKnown RBP11.2□□□□□ -0.62
CLIP1-218ENST00000545889 CEBPAP49715 358 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-218ENST00000545889 TCOF1Q13428 1488 aaKnown RBP11.19□□□□□ -0.62
CLIP1-218ENST00000545889 NUTM2FA1L443 756 aa11.19□□□□□ -0.62
CLIP1-218ENST00000545889 TMEM132EQ6IEE7 984 aa11.19□□□□□ -0.62
CLIP1-218ENST00000545889 CLASP1Q7Z460 1538 aa11.19□□□□□ -0.62
CLIP1-218ENST00000545889 TMX4Q9H1E5 349 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-218ENST00000545889 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.19□□□□□ -0.62
CLIP1-218ENST00000545889 U2SURPO15042 1029 aaKnown RBP11.19□□□□□ -0.62
CLIP1-218ENST00000545889 TULP1O00294 542 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-218ENST00000545889 VGFO15240 615 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-218ENST00000545889 NBPF1Q3BBV0 1214 aa11.18□□□□□ -0.62
CLIP1-218ENST00000545889 UHRF1BP1LA0JNW5 1464 aa11.18□□□□□ -0.62
CLIP1-218ENST00000545889 CFAP70Q5T0N1 1121 aa11.18□□□□□ -0.62
CLIP1-218ENST00000545889 DHX29Q7Z478 1369 aaKnown RBP11.18□□□□□ -0.62
CLIP1-218ENST00000545889 ABCC10Q5T3U5 1492 aa11.17□□□□□ -0.62
CLIP1-218ENST00000545889 PHF23Q9BUL5 403 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-218ENST00000545889 ZNF330Q9Y3S2 320 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-218ENST00000545889 A0A0U1RQG5 324 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-218ENST00000545889 ANKRD30BQ9BXX2 1392 aa11.16□□□□□ -0.62
CLIP1-218ENST00000545889 ZCCHC11Q5TAX3 1644 aaKnown RBP11.16□□□□□ -0.62
CLIP1-218ENST00000545889 USP47Q96K76 1375 aa11.15□□□□□ -0.62
CLIP1-218ENST00000545889 ANP32BQ92688 251 aaKnown RBP11.15□□□□□ -0.62
CLIP1-218ENST00000545889 ZNF518AQ6AHZ1 1483 aa11.15□□□□□ -0.63
CLIP1-218ENST00000545889 TTC37Q6PGP7 1564 aa11.14□□□□□ -0.63
CLIP1-218ENST00000545889 MINK1Q8N4C8 1332 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-218ENST00000545889 A2MP01023 1474 aa11.12□□□□□ -0.63
CLIP1-218ENST00000545889 OS9Q13438 667 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-218ENST00000545889 IDI1Q13907 227 aa11.12□□□□□ -0.63
CLIP1-218ENST00000545889 TEX14Q8IWB6 1497 aa11.12□□□□□ -0.63
CLIP1-218ENST00000545889 ISY1Q9ULR0 285 aaKnown RBP11.12□□□□□ -0.63
CLIP1-218ENST00000545889 NGDNQ8NEJ9 315 aaKnown RBP11.11□□□□□ -0.63
CLIP1-218ENST00000545889 DNMT1P26358 1616 aaKnown RBP11.11□□□□□ -0.63
CLIP1-218ENST00000545889 MEX3CQ5U5Q3 659 aaKnown RBP11.11□□□□□ -0.63
CLIP1-218ENST00000545889 HDGFL2Q7Z4V5 671 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-218ENST00000545889 DCAF8L1A6NGE4 600 aa11.1□□□□□ -0.63
CLIP1-218ENST00000545889 TXNDC2Q86VQ3 553 aa11.1□□□□□ -0.63
CLIP1-218ENST00000545889 SLC52A1Q9NWF4 448 aa11.1□□□□□ -0.63
CLIP1-218ENST00000545889 MBD5Q9P267 1494 aa11.1□□□□□ -0.63
CLIP1-218ENST00000545889 RTF1Q92541 710 aaKnown RBP11.1□□□□□ -0.63
CLIP1-218ENST00000545889 PNNQ9H307 717 aaKnown RBP11.1□□□□□ -0.63
CLIP1-218ENST00000545889 ADCY10Q96PN6 1610 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms