RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 NAIPQ13075 1403 aa17.64■□□□□ 0.41
SNHG1-221ENST00000544983 GGT6Q6P531 493 aa17.62■□□□□ 0.41
SNHG1-221ENST00000544983 ESF1Q9H501 851 aaKnown RBP17.62■□□□□ 0.41
SNHG1-221ENST00000544983 CNTLNQ9NXG0 1405 aa17.62■□□□□ 0.41
SNHG1-221ENST00000544983 RNF17Q9BXT8 1623 aaKnown RBP17.61■□□□□ 0.41
SNHG1-221ENST00000544983 MLECQ14165 292 aa17.61■□□□□ 0.41
SNHG1-221ENST00000544983 ADAMTSL3P82987 1691 aa17.61■□□□□ 0.41
SNHG1-221ENST00000544983 GCC2Q8IWJ2 1684 aa17.61■□□□□ 0.41
SNHG1-221ENST00000544983 KANK1Q14678 1352 aa17.6■□□□□ 0.41
SNHG1-221ENST00000544983 DEPDC5O75140 1603 aa17.58■□□□□ 0.4
SNHG1-221ENST00000544983 PRDM15P57071 1507 aaPredicted RBP17.57■□□□□ 0.4
SNHG1-221ENST00000544983 LMTK3Q96Q04 1460 aa17.57■□□□□ 0.4
SNHG1-221ENST00000544983 SETD5Q9C0A6 1442 aa17.57■□□□□ 0.4
SNHG1-221ENST00000544983 HRCP23327 699 aa17.57■□□□□ 0.4
SNHG1-221ENST00000544983 WASHC2CQ9Y4E1 1318 aa17.56■□□□□ 0.4
SNHG1-221ENST00000544983 KDM5DQ9BY66 1539 aa17.56■□□□□ 0.4
SNHG1-221ENST00000544983 FER1L4A9Z1Z3 1794 aa17.54■□□□□ 0.4
SNHG1-221ENST00000544983 ZC3H13Q5T200 1668 aaKnown RBP17.54■□□□□ 0.4
SNHG1-221ENST00000544983 MROH1Q8NDA8 1641 aa17.54■□□□□ 0.4
SNHG1-221ENST00000544983 UNC13BO14795 1591 aa17.53■□□□□ 0.4
SNHG1-221ENST00000544983 SOCS7O14512 581 aa17.53■□□□□ 0.4
SNHG1-221ENST00000544983 MADDQ8WXG6 1647 aa17.53■□□□□ 0.4
SNHG1-221ENST00000544983 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.52■□□□□ 0.4
SNHG1-221ENST00000544983 VWDEQ8N2E2 1590 aa17.52■□□□□ 0.39
SNHG1-221ENST00000544983 MROH2AA6NES4 1674 aa17.52■□□□□ 0.39
SNHG1-221ENST00000544983 LMTK2Q8IWU2 1503 aa17.51■□□□□ 0.39
SNHG1-221ENST00000544983 NUP155O75694 1391 aa17.51■□□□□ 0.39
SNHG1-221ENST00000544983 ABCC3O15438 1527 aa17.5■□□□□ 0.39
SNHG1-221ENST00000544983 ZMYM3Q14202 1370 aa17.5■□□□□ 0.39
SNHG1-221ENST00000544983 PTPRMP28827 1452 aa17.49■□□□□ 0.39
SNHG1-221ENST00000544983 ARHGAP31Q2M1Z3 1444 aa17.48■□□□□ 0.39
SNHG1-221ENST00000544983 RAB3GAP2Q9H2M9 1393 aa17.48■□□□□ 0.39
SNHG1-221ENST00000544983 RIMS1Q86UR5 1692 aaKnown RBP17.48■□□□□ 0.39
SNHG1-221ENST00000544983 CLTCQ00610 1675 aaKnown RBP17.47■□□□□ 0.39
SNHG1-221ENST00000544983 IQGAP3Q86VI3 1631 aa17.47■□□□□ 0.39
SNHG1-221ENST00000544983 TRIM52Q96A61 297 aa17.46■□□□□ 0.39
SNHG1-221ENST00000544983 PZPP20742 1482 aa17.44■□□□□ 0.38
SNHG1-221ENST00000544983 RPRD2Q5VT52 1461 aaKnown RBP17.44■□□□□ 0.38
SNHG1-221ENST00000544983 NPATQ14207 1427 aa17.44■□□□□ 0.38
SNHG1-221ENST00000544983 TET3O43151 1660 aa17.43■□□□□ 0.38
SNHG1-221ENST00000544983 ILDR2Q71H61 639 aa17.43■□□□□ 0.38
SNHG1-221ENST00000544983 CEP152O94986 1710 aa17.43■□□□□ 0.38
SNHG1-221ENST00000544983 CAMSAP1Q5T5Y3 1602 aa17.43■□□□□ 0.38
SNHG1-221ENST00000544983 SETD1BQ9UPS6 1966 aaKnown RBP17.42■□□□□ 0.38
SNHG1-221ENST00000544983 EFCAB6Q5THR3 1501 aa17.42■□□□□ 0.38
SNHG1-221ENST00000544983 C3P01024 1663 aa17.42■□□□□ 0.38
SNHG1-221ENST00000544983 SLC4A1APQ9BWU0 796 aaKnown RBP17.4■□□□□ 0.38
SNHG1-221ENST00000544983 CEBPAP49715 358 aaPredicted RBP17.38■□□□□ 0.37
SNHG1-221ENST00000544983 PCGF6Q9BYE7 350 aa17.38■□□□□ 0.37
SNHG1-221ENST00000544983 MPHOSPH9Q99550 1183 aa17.37■□□□□ 0.37
SNHG1-221ENST00000544983 PKD2Q13563 968 aa17.35■□□□□ 0.37
SNHG1-221ENST00000544983 ERVK-7P63135 1459 aa17.35■□□□□ 0.37
SNHG1-221ENST00000544983 SPATA31D1Q6ZQQ2 1576 aa17.35■□□□□ 0.37
SNHG1-221ENST00000544983 FBXO31Q5XUX0 539 aaPredicted RBP17.34■□□□□ 0.37
SNHG1-221ENST00000544983 TNRQ92752 1358 aa17.34■□□□□ 0.37
SNHG1-221ENST00000544983 E9PCH4 1651 aa17.33■□□□□ 0.37
SNHG1-221ENST00000544983 NOS1P29475 1434 aa17.33■□□□□ 0.36
SNHG1-221ENST00000544983 SLC52A1Q9NWF4 448 aa17.33■□□□□ 0.36
SNHG1-221ENST00000544983 PREX1Q8TCU6 1659 aa17.32■□□□□ 0.36
SNHG1-221ENST00000544983 NLRP1Q9C000 1473 aa17.32■□□□□ 0.36
SNHG1-221ENST00000544983 PLPPR3Q6T4P5 718 aa17.32■□□□□ 0.36
SNHG1-221ENST00000544983 PTPRTO14522 1441 aa17.31■□□□□ 0.36
SNHG1-221ENST00000544983 UHRF1BP1Q6BDS2 1440 aa17.3■□□□□ 0.36
SNHG1-221ENST00000544983 CFAP65Q6ZU64 1925 aaKnown RBP17.3■□□□□ 0.36
SNHG1-221ENST00000544983 DISP3Q9P2K9 1392 aa17.28■□□□□ 0.36
SNHG1-221ENST00000544983 A2ML1A8K2U0 1454 aa17.26■□□□□ 0.35
SNHG1-221ENST00000544983 SPHKAPQ2M3C7 1700 aa17.26■□□□□ 0.35
SNHG1-221ENST00000544983 SYNMO15061 1565 aa17.25■□□□□ 0.35
SNHG1-221ENST00000544983 TRPM2O94759 1503 aa17.25■□□□□ 0.35
SNHG1-221ENST00000544983 MYO3AQ8NEV4 1616 aa17.25■□□□□ 0.35
SNHG1-221ENST00000544983 IDI1Q13907 227 aa17.24■□□□□ 0.35
SNHG1-221ENST00000544983 ZNF142P52746 1687 aaPredicted RBP17.23■□□□□ 0.35
SNHG1-221ENST00000544983 THEMISQ8N1K5 641 aaPredicted RBP17.23■□□□□ 0.35
SNHG1-221ENST00000544983 CEP170BQ9Y4F5 1589 aaPredicted RBP17.23■□□□□ 0.35
SNHG1-221ENST00000544983 KDM5AP29375 1690 aaKnown RBP17.23■□□□□ 0.35
SNHG1-221ENST00000544983 PIK3C2BO00750 1634 aa17.22■□□□□ 0.35
SNHG1-221ENST00000544983 PLA2R1Q13018 1463 aa17.22■□□□□ 0.35
SNHG1-221ENST00000544983 ANKRD30BQ9BXX2 1392 aa17.21■□□□□ 0.35
SNHG1-221ENST00000544983 FOXD1Q16676 465 aa17.21■□□□□ 0.35
SNHG1-221ENST00000544983 STAG3Q9UJ98 1225 aa17.21■□□□□ 0.35
SNHG1-221ENST00000544983 CCDC144AA2RUR9 1427 aa17.21■□□□□ 0.34
SNHG1-221ENST00000544983 UGGT1Q9NYU2 1555 aa17.2■□□□□ 0.34
SNHG1-221ENST00000544983 DHX57Q6P158 1386 aaKnown RBP17.19■□□□□ 0.34
SNHG1-221ENST00000544983 ADGRB3O60242 1522 aa17.16■□□□□ 0.34
SNHG1-221ENST00000544983 HDGFP51858 240 aaKnown RBP17.16■□□□□ 0.34
SNHG1-221ENST00000544983 UBR1Q8IWV7 1749 aa17.15■□□□□ 0.34
SNHG1-221ENST00000544983 CLSPNQ9HAW4 1339 aa17.15■□□□□ 0.34
SNHG1-221ENST00000544983 NEURL4Q96JN8 1562 aa17.15■□□□□ 0.34
SNHG1-221ENST00000544983 CLTCL1P53675 1640 aa17.14■□□□□ 0.33
SNHG1-221ENST00000544983 TMEM131LA2VDJ0 1609 aa17.14■□□□□ 0.33
SNHG1-221ENST00000544983 KIF1BO60333 1816 aa17.13■□□□□ 0.33
SNHG1-221ENST00000544983 TMEM2Q9UHN6 1383 aa17.13■□□□□ 0.33
SNHG1-221ENST00000544983 SLIT1O75093 1534 aa17.12■□□□□ 0.33
SNHG1-221ENST00000544983 CHGAP10645 457 aaKnown RBP17.12■□□□□ 0.33
SNHG1-221ENST00000544983 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.12■□□□□ 0.336e-32■□□□□ 8.9
SNHG1-221ENST00000544983 EID1Q9Y6B2 187 aa17.12■□□□□ 0.33
SNHG1-221ENST00000544983 RPGRIP1LQ68CZ1 1315 aa17.12■□□□□ 0.33
SNHG1-221ENST00000544983 ANKLE2Q86XL3 938 aa17.11■□□□□ 0.33
SNHG1-221ENST00000544983 CERKQ8TCT0 537 aa17.11■□□□□ 0.33
SNHG1-221ENST00000544983 ARHGAP23Q9P227 1491 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms