RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 ATAD2BQ9ULI0 1458 aa9.84□□□□□ -0.83
VPS13D-211ENST00000543710 PHF14O94880 888 aa9.83□□□□□ -0.84
VPS13D-211ENST00000543710 HECW1Q76N89 1606 aa9.83□□□□□ -0.84
VPS13D-211ENST00000543710 RAB3GAP2Q9H2M9 1393 aa9.82□□□□□ -0.84
VPS13D-211ENST00000543710 DISP3Q9P2K9 1392 aa9.82□□□□□ -0.84
VPS13D-211ENST00000543710 RTF1Q92541 710 aaKnown RBP9.82□□□□□ -0.84
VPS13D-211ENST00000543710 POLD1P28340 1107 aa9.82□□□□□ -0.84
VPS13D-211ENST00000543710 SOX12O15370 315 aa9.82□□□□□ -0.84
VPS13D-211ENST00000543710 HMGXB3Q12766 1538 aa9.82□□□□□ -0.84
VPS13D-211ENST00000543710 STK26Q9P289 416 aa9.82□□□□□ -0.84
VPS13D-211ENST00000543710 CTDP1Q9Y5B0 961 aaPredicted RBP9.82□□□□□ -0.84
VPS13D-211ENST00000543710 GPATCH3Q96I76 525 aa9.81□□□□□ -0.84
VPS13D-211ENST00000543710 CCAR1Q8IX12 1150 aaKnown RBP9.81□□□□□ -0.84
VPS13D-211ENST00000543710 CCDC34Q96HJ3 373 aa9.81□□□□□ -0.84
VPS13D-211ENST00000543710 SKOR2Q2VWA4 1001 aaPredicted RBP9.8□□□□□ -0.84
VPS13D-211ENST00000543710 GPRASP1Q5JY77 1395 aa9.8□□□□□ -0.84
VPS13D-211ENST00000543710 ROCK1Q13464 1354 aa9.79□□□□□ -0.84
VPS13D-211ENST00000543710 SYTL4Q96C24 671 aaPredicted RBP9.79□□□□□ -0.84
VPS13D-211ENST00000543710 CUL7Q14999 1698 aa9.79□□□□□ -0.84
VPS13D-211ENST00000543710 CNTLNQ9NXG0 1405 aa9.79□□□□□ -0.84
VPS13D-211ENST00000543710 DDX11L8A8MPP1 907 aa9.79□□□□□ -0.84
VPS13D-211ENST00000543710 DNTTIP2Q5QJE6 756 aaKnown RBP9.79□□□□□ -0.84
VPS13D-211ENST00000543710 ZRANB1Q9UGI0 708 aa9.79□□□□□ -0.84
VPS13D-211ENST00000543710 PLEKHH2Q8IVE3 1493 aa9.79□□□□□ -0.84
VPS13D-211ENST00000543710 NINLQ9Y2I6 1382 aa9.78□□□□□ -0.84
VPS13D-211ENST00000543710 VGFO15240 615 aaPredicted RBP9.78□□□□□ -0.84
VPS13D-211ENST00000543710 TXNDC2Q86VQ3 553 aa9.78□□□□□ -0.84
VPS13D-211ENST00000543710 TRIM34Q9BYJ4 488 aa9.78□□□□□ -0.84
VPS13D-211ENST00000543710 TEX14Q8IWB6 1497 aa9.78□□□□□ -0.84
VPS13D-211ENST00000543710 WWC1Q8IX03 1113 aa9.78□□□□□ -0.84
VPS13D-211ENST00000543710 MYBBP1AQ9BQG0 1328 aaKnown RBP9.77□□□□□ -0.84
VPS13D-211ENST00000543710 HSPA5P11021 654 aaKnown RBP9.77□□□□□ -0.84
VPS13D-211ENST00000543710 AMPHP49418 695 aa9.77□□□□□ -0.85
VPS13D-211ENST00000543710 MORC1Q86VD1 984 aa9.77□□□□□ -0.85
VPS13D-211ENST00000543710 HMMRO75330 724 aa9.76□□□□□ -0.85
VPS13D-211ENST00000543710 NAP1L5Q96NT1 182 aaPredicted RBP9.76□□□□□ -0.85
VPS13D-211ENST00000543710 CASKIN1Q8WXD9 1431 aa9.76□□□□□ -0.85
VPS13D-211ENST00000543710 KIAA2012Q0VF49 1180 aa9.76□□□□□ -0.85
VPS13D-211ENST00000543710 MYOM3Q5VTT5 1437 aa9.76□□□□□ -0.85
VPS13D-211ENST00000543710 TOP2BQ02880 1626 aa9.76□□□□□ -0.85
VPS13D-211ENST00000543710 SUPT6HQ7KZ85 1726 aaKnown RBP9.76□□□□□ -0.85
VPS13D-211ENST00000543710 HSP90B1P14625 803 aaKnown RBP9.76□□□□□ -0.85
VPS13D-211ENST00000543710 CCDC144AA2RUR9 1427 aa9.76□□□□□ -0.85
VPS13D-211ENST00000543710 GOLGA6L4A6NEF3 574 aa9.75□□□□□ -0.85
VPS13D-211ENST00000543710 ZNF710Q8N1W2 664 aa9.75□□□□□ -0.85
VPS13D-211ENST00000543710 MAP3K9P80192 1104 aa9.75□□□□□ -0.85
VPS13D-211ENST00000543710 GRIN2BQ13224 1484 aa9.75□□□□□ -0.85
VPS13D-211ENST00000543710 KIF3AQ9Y496 699 aa9.74□□□□□ -0.85
VPS13D-211ENST00000543710 LMTK3Q96Q04 1460 aa9.74□□□□□ -0.85
VPS13D-211ENST00000543710 MAP3K1Q13233 1512 aa9.74□□□□□ -0.85
VPS13D-211ENST00000543710 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS13D-211ENST00000543710 TERF2IPQ9NYB0 399 aa9.74□□□□□ -0.85
VPS13D-211ENST00000543710 CC2D2AQ9P2K1 1620 aa9.74□□□□□ -0.85
VPS13D-211ENST00000543710 TAF7LQ5H9L4 462 aa9.73□□□□□ -0.85
VPS13D-211ENST00000543710 BAG6P46379 1132 aa9.73□□□□□ -0.85
VPS13D-211ENST00000543710 CENPQQ7L2Z9 268 aaPredicted RBP9.73□□□□□ -0.85
VPS13D-211ENST00000543710 RCAN3Q9UKA8 241 aa9.73□□□□□ -0.85
VPS13D-211ENST00000543710 FRAT2O75474 233 aaPredicted RBP9.73□□□□□ -0.85
VPS13D-211ENST00000543710 OS9Q13438 667 aaPredicted RBP9.73□□□□□ -0.85
VPS13D-211ENST00000543710 MPHOSPH9Q99550 1183 aa9.73□□□□□ -0.85
VPS13D-211ENST00000543710 NOL10Q9BSC4 688 aaKnown RBP9.73□□□□□ -0.85
VPS13D-211ENST00000543710 C1orf141Q5JVX7 400 aa9.72□□□□□ -0.85
VPS13D-211ENST00000543710 BCL11BQ9C0K0 894 aaPredicted RBP9.72□□□□□ -0.85
VPS13D-211ENST00000543710 IPO9Q96P70 1041 aaKnown RBP9.72□□□□□ -0.85
VPS13D-211ENST00000543710 AKNAQ7Z591 1439 aa9.72□□□□□ -0.85
VPS13D-211ENST00000543710 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.72□□□□□ -0.85
VPS13D-211ENST00000543710 KIAA1211Q6ZU35 1233 aa9.71□□□□□ -0.85
VPS13D-211ENST00000543710 RSPH6AQ9H0K4 717 aa9.71□□□□□ -0.85
VPS13D-211ENST00000543710 ZBED9Q6R2W3 1325 aa9.71□□□□□ -0.85
VPS13D-211ENST00000543710 NCAPD3P42695 1498 aa9.71□□□□□ -0.85
VPS13D-211ENST00000543710 SAFB2Q14151 953 aaKnown RBP eCLIP9.71□□□□□ -0.85
VPS13D-211ENST00000543710 NLRP13Q86W25 1043 aa9.71□□□□□ -0.85
VPS13D-211ENST00000543710 LRPPRCP42704 1394 aaKnown RBP9.71□□□□□ -0.86
VPS13D-211ENST00000543710 DHX57Q6P158 1386 aaKnown RBP9.71□□□□□ -0.86
VPS13D-211ENST00000543710 CGNL1Q0VF96 1302 aa9.7□□□□□ -0.86
VPS13D-211ENST00000543710 FANCIQ9NVI1 1328 aa9.7□□□□□ -0.86
VPS13D-211ENST00000543710 PRG4Q92954 1404 aaPredicted RBP9.7□□□□□ -0.86
VPS13D-211ENST00000543710 RRBP1Q9P2E9 1410 aaKnown RBP9.7□□□□□ -0.86
VPS13D-211ENST00000543710 RBM33Q96EV2 1170 aaKnown RBP9.7□□□□□ -0.86
VPS13D-211ENST00000543710 GOLGA6L3A6NEY3 463 aa9.7□□□□□ -0.86
VPS13D-211ENST00000543710 DHX8Q14562 1220 aaKnown RBP9.7□□□□□ -0.86
VPS13D-211ENST00000543710 TTC5Q8N0Z6 440 aa9.7□□□□□ -0.86
VPS13D-211ENST00000543710 DCAF11Q8TEB1 546 aa9.69□□□□□ -0.86
VPS13D-211ENST00000543710 RAPGEF4Q8WZA2 1011 aa9.69□□□□□ -0.86
VPS13D-211ENST00000543710 SALL2Q9Y467 1007 aaPredicted RBP9.69□□□□□ -0.86
VPS13D-211ENST00000543710 AQRO60306 1485 aaKnown RBP eCLIP9.69□□□□□ -0.867e-7■■■■■ 33.2
VPS13D-211ENST00000543710 GAPVD1Q14C86 1478 aa9.69□□□□□ -0.86
VPS13D-211ENST00000543710 LRRC9Q6ZRR7 1453 aa9.69□□□□□ -0.86
VPS13D-211ENST00000543710 ATP6V1DQ9Y5K8 247 aa9.69□□□□□ -0.86
VPS13D-211ENST00000543710 KIF16BQ96L93 1317 aa9.69□□□□□ -0.86
VPS13D-211ENST00000543710 NUP155O75694 1391 aa9.69□□□□□ -0.86
VPS13D-211ENST00000543710 LRRFIP1Q32MZ4 808 aaKnown RBP9.68□□□□□ -0.86
VPS13D-211ENST00000543710 KCNJ4P48050 445 aa9.68□□□□□ -0.86
VPS13D-211ENST00000543710 ZNF772Q68DY9 489 aaPredicted RBP9.68□□□□□ -0.86
VPS13D-211ENST00000543710 C11orf95C9JLR9 678 aaPredicted RBP9.68□□□□□ -0.86
VPS13D-211ENST00000543710 NEUROD2Q15784 382 aa9.68□□□□□ -0.86
VPS13D-211ENST00000543710 CNKSR2Q8WXI2 1034 aa9.67□□□□□ -0.86
VPS13D-211ENST00000543710 THOC2Q8NI27 1593 aaKnown RBP9.67□□□□□ -0.86
VPS13D-211ENST00000543710 ST18O60284 1047 aa9.67□□□□□ -0.86
VPS13D-211ENST00000543710 FGD1P98174 961 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms