RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 DCAF8L2P0C7V8 631 aa13.8□□□□□ -0.2
VPS13D-211ENST00000543710 NISCHQ9Y2I1 1504 aa13.22□□□□□ -0.29
VPS13D-211ENST00000543710 FAM9AQ8IZU1 332 aaPredicted RBP13.14□□□□□ -0.31
VPS13D-211ENST00000543710 PELP1Q8IZL8 1130 aaKnown RBP12.53□□□□□ -0.4
VPS13D-211ENST00000543710 CHIC1Q5VXU3 224 aa12.23□□□□□ -0.45
VPS13D-211ENST00000543710 AEBP2Q6ZN18 517 aaPredicted RBP12.21□□□□□ -0.45
VPS13D-211ENST00000543710 ZEB1P37275 1124 aaPredicted RBP12.15□□□□□ -0.46
VPS13D-211ENST00000543710 MYT1Q01538 1121 aa12.13□□□□□ -0.47
VPS13D-211ENST00000543710 MYT1LQ9UL68 1186 aa12.04□□□□□ -0.48
VPS13D-211ENST00000543710 SUPT5HO00267 1087 aaKnown RBP12.03□□□□□ -0.48
VPS13D-211ENST00000543710 APLP2Q06481 763 aa12□□□□□ -0.49
VPS13D-211ENST00000543710 CCER1Q8TC90 406 aaPredicted RBP11.92□□□□□ -0.5
VPS13D-211ENST00000543710 CENPBP07199 599 aaPredicted RBP11.84□□□□□ -0.51
VPS13D-211ENST00000543710 SHROOM4Q9ULL8 1493 aa11.82□□□□□ -0.52
VPS13D-211ENST00000543710 ABCC9O60706 1549 aa11.82□□□□□ -0.52
VPS13D-211ENST00000543710 NPM1P06748 294 aaKnown RBP eCLIP11.73□□□□□ -0.53
VPS13D-211ENST00000543710 ATP1B4Q9UN42 357 aaPredicted RBP11.73□□□□□ -0.53
VPS13D-211ENST00000543710 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.72□□□□□ -0.53
VPS13D-211ENST00000543710 HNRNPUL2Q1KMD3 747 aaKnown RBP11.72□□□□□ -0.53
VPS13D-211ENST00000543710 ESF1Q9H501 851 aaKnown RBP11.66□□□□□ -0.54
VPS13D-211ENST00000543710 ERICH6Q7L0X2 663 aa11.62□□□□□ -0.55
VPS13D-211ENST00000543710 FBLN2P98095 1184 aa11.6□□□□□ -0.55
VPS13D-211ENST00000543710 PABPN1Q86U42 306 aaKnown RBP eCLIP11.6□□□□□ -0.55
VPS13D-211ENST00000543710 TTBK1Q5TCY1 1321 aaPredicted RBP11.59□□□□□ -0.55
VPS13D-211ENST00000543710 TRIM41Q8WV44 630 aa11.53□□□□□ -0.56
VPS13D-211ENST00000543710 TRHP20396 242 aaPredicted RBP11.5□□□□□ -0.57
VPS13D-211ENST00000543710 NEFLP07196 543 aa11.49□□□□□ -0.57
VPS13D-211ENST00000543710 CCDC180Q9P1Z9 1646 aa11.46□□□□□ -0.57
VPS13D-211ENST00000543710 YTHDC1Q96MU7 727 aaKnown RBP11.44□□□□□ -0.58
VPS13D-211ENST00000543710 TRIM26Q12899 539 aaPredicted RBP11.44□□□□□ -0.58
VPS13D-211ENST00000543710 PCGF6Q9BYE7 350 aa11.38□□□□□ -0.59
VPS13D-211ENST00000543710 RANGAP1P46060 587 aaPredicted RBP11.37□□□□□ -0.59
VPS13D-211ENST00000543710 BCANQ96GW7 911 aa11.35□□□□□ -0.59
VPS13D-211ENST00000543710 EHMT2Q96KQ7 1210 aa11.31□□□□□ -0.6
VPS13D-211ENST00000543710 UBTFP17480 764 aaKnown RBP11.27□□□□□ -0.61
VPS13D-211ENST00000543710 ERCC6Q03468 1493 aa11.25□□□□□ -0.61
VPS13D-211ENST00000543710 HRCP23327 699 aa11.24□□□□□ -0.61
VPS13D-211ENST00000543710 FOXD1Q16676 465 aa11.22□□□□□ -0.61
VPS13D-211ENST00000543710 CLSPNQ9HAW4 1339 aa11.22□□□□□ -0.61
VPS13D-211ENST00000543710 PLPPR3Q6T4P5 718 aa11.22□□□□□ -0.61
VPS13D-211ENST00000543710 CHMP7Q8WUX9 453 aaPredicted RBP11.18□□□□□ -0.62
VPS13D-211ENST00000543710 DCAF8L1A6NGE4 600 aa11.16□□□□□ -0.62
VPS13D-211ENST00000543710 STAG3Q9UJ98 1225 aa11.15□□□□□ -0.62
VPS13D-211ENST00000543710 DAXXQ9UER7 740 aaPredicted RBP11.14□□□□□ -0.63
VPS13D-211ENST00000543710 ARID4BQ4LE39 1312 aaPredicted RBP11.11□□□□□ -0.63
VPS13D-211ENST00000543710 CDK11AQ9UQ88 783 aaPredicted RBP11.09□□□□□ -0.63
VPS13D-211ENST00000543710 ZCCHC6Q5VYS8 1495 aaKnown RBP11.08□□□□□ -0.64
VPS13D-211ENST00000543710 ACIN1Q9UKV3 1341 aaKnown RBP11.06□□□□□ -0.64
VPS13D-211ENST00000543710 DCAF1Q9Y4B6 1507 aa11.05□□□□□ -0.64
VPS13D-211ENST00000543710 SLC4A1APQ9BWU0 796 aaKnown RBP11.04□□□□□ -0.64
VPS13D-211ENST00000543710 PHF23Q9BUL5 403 aaPredicted RBP11.04□□□□□ -0.64
VPS13D-211ENST00000543710 SCAF1Q9H7N4 1312 aaKnown RBP11.01□□□□□ -0.65
VPS13D-211ENST00000543710 RB1CC1Q8TDY2 1594 aa11.01□□□□□ -0.65
VPS13D-211ENST00000543710 C14orf37Q86TY3 774 aa10.98□□□□□ -0.65
VPS13D-211ENST00000543710 HAP1P54257 671 aaPredicted RBP10.96□□□□□ -0.65
VPS13D-211ENST00000543710 RTL5Q5HYW3 569 aaPredicted RBP10.92□□□□□ -0.66
VPS13D-211ENST00000543710 ZNF316A6NFI3 1004 aaPredicted RBP10.88□□□□□ -0.67
VPS13D-211ENST00000543710 EEA1Q15075 1411 aa10.87□□□□□ -0.67
VPS13D-211ENST00000543710 NPM2Q86SE8 214 aaKnown RBP10.85□□□□□ -0.67
VPS13D-211ENST00000543710 NACADO15069 1562 aa10.85□□□□□ -0.67
VPS13D-211ENST00000543710 DIEXFQ68CQ4 756 aaKnown RBP10.85□□□□□ -0.67
VPS13D-211ENST00000543710 A0A0G2JS52 829 aa10.82□□□□□ -0.68
VPS13D-211ENST00000543710 ANP32CO43423 234 aa10.8□□□□□ -0.68
VPS13D-211ENST00000543710 PPP1R15AO75807 674 aaPredicted RBP10.8□□□□□ -0.68
VPS13D-211ENST00000543710 NEFMP07197 916 aa10.8□□□□□ -0.68
VPS13D-211ENST00000543710 OSCARQ8IYS5 282 aa10.79□□□□□ -0.68
VPS13D-211ENST00000543710 SCRIBQ14160 1630 aa10.77□□□□□ -0.68
VPS13D-211ENST00000543710 SLC24A1O60721 1099 aa10.75□□□□□ -0.69
VPS13D-211ENST00000543710 HDGFP51858 240 aaKnown RBP10.75□□□□□ -0.69
VPS13D-211ENST00000543710 CHGAP10645 457 aaKnown RBP10.75□□□□□ -0.69
VPS13D-211ENST00000543710 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.72□□□□□ -0.691e-8■■□□□ 11.4
VPS13D-211ENST00000543710 ZNF777Q9ULD5 760 aaPredicted RBP10.72□□□□□ -0.69
VPS13D-211ENST00000543710 ZBTB47Q9UFB7 747 aaPredicted RBP10.68□□□□□ -0.7
VPS13D-211ENST00000543710 EIF5BO60841 1220 aaKnown RBP10.68□□□□□ -0.7
VPS13D-211ENST00000543710 PDS5BQ9NTI5 1447 aa10.67□□□□□ -0.7
VPS13D-211ENST00000543710 TRIM52Q96A61 297 aa10.66□□□□□ -0.7
VPS13D-211ENST00000543710 FAM50AQ14320 339 aaKnown RBP10.66□□□□□ -0.7
VPS13D-211ENST00000543710 POLR3GLQ9BT43 218 aa10.66□□□□□ -0.7
VPS13D-211ENST00000543710 KCNH8Q96L42 1107 aa10.66□□□□□ -0.7
VPS13D-211ENST00000543710 GOLGA3Q08378 1498 aa10.64□□□□□ -0.71
VPS13D-211ENST00000543710 MEX3CQ5U5Q3 659 aaKnown RBP10.64□□□□□ -0.71
VPS13D-211ENST00000543710 ARID3CA6NKF2 412 aa10.62□□□□□ -0.71
VPS13D-211ENST00000543710 ANP32AP39687 249 aaKnown RBP10.62□□□□□ -0.71
VPS13D-211ENST00000543710 PLEKHD1A6NEE1 506 aa10.62□□□□□ -0.71
VPS13D-211ENST00000543710 CSRNP3Q8WYN3 585 aa10.62□□□□□ -0.71
VPS13D-211ENST00000543710 CECR2Q9BXF3 1484 aa10.62□□□□□ -0.71
VPS13D-211ENST00000543710 ITGAEP38570 1179 aa10.61□□□□□ -0.71
VPS13D-211ENST00000543710 RSF1Q96T23 1441 aaPredicted RBP10.61□□□□□ -0.71
VPS13D-211ENST00000543710 CYB5RLQ6IPT4 315 aa10.6□□□□□ -0.71
VPS13D-211ENST00000543710 TSPY4P0CV99 314 aa10.6□□□□□ -0.71
VPS13D-211ENST00000543710 TSPY10P0CW01 314 aa10.6□□□□□ -0.71
VPS13D-211ENST00000543710 MYO15BQ96JP2 1530 aa10.6□□□□□ -0.71
VPS13D-211ENST00000543710 LOC105371045A0A1W2PR82 267 aa10.6□□□□□ -0.71
VPS13D-211ENST00000543710 SF3B2Q13435 895 aaKnown RBP10.57□□□□□ -0.72
VPS13D-211ENST00000543710 BAZ1AQ9NRL2 1556 aaPredicted RBP10.56□□□□□ -0.72
VPS13D-211ENST00000543710 SENP3Q9H4L4 574 aaPredicted RBP10.55□□□□□ -0.72
VPS13D-211ENST00000543710 NPHP1O15259 732 aa10.55□□□□□ -0.72
VPS13D-211ENST00000543710 CEP164Q9UPV0 1460 aa10.54□□□□□ -0.72
VPS13D-211ENST00000543710 ANP32BQ92688 251 aaKnown RBP10.54□□□□□ -0.72
VPS13D-211ENST00000543710 TONSLQ96HA7 1378 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 520.4 ms