RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 NAIPQ13075 1403 aa18.26■□□□□ 0.51
DDX55-210ENST00000543016 FAM135AQ9P2D6 1515 aa18.25■□□□□ 0.51
DDX55-210ENST00000543016 PIAS4Q8N2W9 510 aaPredicted RBP18.25■□□□□ 0.51
DDX55-210ENST00000543016 GGT6Q6P531 493 aa18.24■□□□□ 0.51
DDX55-210ENST00000543016 ESF1Q9H501 851 aaKnown RBP18.24■□□□□ 0.51
DDX55-210ENST00000543016 MLECQ14165 292 aa18.23■□□□□ 0.51
DDX55-210ENST00000543016 CNTLNQ9NXG0 1405 aa18.23■□□□□ 0.51
DDX55-210ENST00000543016 SIGLEC1Q9BZZ2 1709 aa18.22■□□□□ 0.51
DDX55-210ENST00000543016 KANK1Q14678 1352 aa18.21■□□□□ 0.51
DDX55-210ENST00000543016 RNF17Q9BXT8 1623 aaKnown RBP18.21■□□□□ 0.51
DDX55-210ENST00000543016 HRCP23327 699 aa18.21■□□□□ 0.51
DDX55-210ENST00000543016 SETD5Q9C0A6 1442 aa18.21■□□□□ 0.51
DDX55-210ENST00000543016 GCC2Q8IWJ2 1684 aa18.21■□□□□ 0.51
DDX55-210ENST00000543016 ADAMTSL3P82987 1691 aa18.18■□□□□ 0.5
DDX55-210ENST00000543016 WASHC2CQ9Y4E1 1318 aa18.18■□□□□ 0.5
DDX55-210ENST00000543016 DEPDC5O75140 1603 aa18.17■□□□□ 0.5
DDX55-210ENST00000543016 PRDM15P57071 1507 aaPredicted RBP18.17■□□□□ 0.5
DDX55-210ENST00000543016 KDM5DQ9BY66 1539 aa18.17■□□□□ 0.5
DDX55-210ENST00000543016 KDM4FA0A1W2PPD8 638 aa18.16■□□□□ 0.5
DDX55-210ENST00000543016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.15■□□□□ 0.53e-6■□□□□ 11.3
DDX55-210ENST00000543016 NUP155O75694 1391 aa18.14■□□□□ 0.49
DDX55-210ENST00000543016 UNC13BO14795 1591 aa18.13■□□□□ 0.49
DDX55-210ENST00000543016 MROH1Q8NDA8 1641 aa18.13■□□□□ 0.49
DDX55-210ENST00000543016 VWDEQ8N2E2 1590 aa18.13■□□□□ 0.49
DDX55-210ENST00000543016 LMTK2Q8IWU2 1503 aa18.12■□□□□ 0.49
DDX55-210ENST00000543016 ZC3H13Q5T200 1668 aaKnown RBP18.12■□□□□ 0.49
DDX55-210ENST00000543016 ZMYM3Q14202 1370 aa18.11■□□□□ 0.49
DDX55-210ENST00000543016 RAB3GAP2Q9H2M9 1393 aa18.11■□□□□ 0.49
DDX55-210ENST00000543016 ABCC3O15438 1527 aa18.11■□□□□ 0.49
DDX55-210ENST00000543016 MADDQ8WXG6 1647 aa18.11■□□□□ 0.49
DDX55-210ENST00000543016 FER1L4A9Z1Z3 1794 aa18.11■□□□□ 0.49
DDX55-210ENST00000543016 MROH2AA6NES4 1674 aa18.09■□□□□ 0.49
DDX55-210ENST00000543016 ARHGAP31Q2M1Z3 1444 aa18.09■□□□□ 0.49
DDX55-210ENST00000543016 TRIM52Q96A61 297 aa18.09■□□□□ 0.49
DDX55-210ENST00000543016 PTPRMP28827 1452 aa18.08■□□□□ 0.49
DDX55-210ENST00000543016 IQGAP3Q86VI3 1631 aa18.06■□□□□ 0.48
DDX55-210ENST00000543016 MSH5O43196 834 aa18.06■□□□□ 0.48
DDX55-210ENST00000543016 CLTCQ00610 1675 aaKnown RBP18.06■□□□□ 0.48
DDX55-210ENST00000543016 RIMS1Q86UR5 1692 aaKnown RBP18.06■□□□□ 0.48
DDX55-210ENST00000543016 PZPP20742 1482 aa18.05■□□□□ 0.48
DDX55-210ENST00000543016 RPRD2Q5VT52 1461 aaKnown RBP18.05■□□□□ 0.48
DDX55-210ENST00000543016 NPATQ14207 1427 aa18.04■□□□□ 0.48
DDX55-210ENST00000543016 SLC4A1APQ9BWU0 796 aaKnown RBP18.03■□□□□ 0.48
DDX55-210ENST00000543016 PCGF6Q9BYE7 350 aa18.03■□□□□ 0.48
DDX55-210ENST00000543016 TET3O43151 1660 aa18.03■□□□□ 0.48
DDX55-210ENST00000543016 EFCAB6Q5THR3 1501 aa18.02■□□□□ 0.47
DDX55-210ENST00000543016 CAMSAP1Q5T5Y3 1602 aa18.01■□□□□ 0.47
DDX55-210ENST00000543016 MPHOSPH9Q99550 1183 aa18.01■□□□□ 0.47
DDX55-210ENST00000543016 CEBPAP49715 358 aaPredicted RBP18■□□□□ 0.47
DDX55-210ENST00000543016 CEP152O94986 1710 aa18■□□□□ 0.47
DDX55-210ENST00000543016 C3P01024 1663 aa17.99■□□□□ 0.47
DDX55-210ENST00000543016 SETD1BQ9UPS6 1966 aaKnown RBP17.99■□□□□ 0.47
DDX55-210ENST00000543016 PKD2Q13563 968 aa17.97■□□□□ 0.47
DDX55-210ENST00000543016 ERVK-7P63135 1459 aa17.95■□□□□ 0.46
DDX55-210ENST00000543016 TNRQ92752 1358 aa17.95■□□□□ 0.46
DDX55-210ENST00000543016 FBXO31Q5XUX0 539 aaPredicted RBP17.95■□□□□ 0.46
DDX55-210ENST00000543016 SLC52A1Q9NWF4 448 aa17.95■□□□□ 0.46
DDX55-210ENST00000543016 NOS1P29475 1434 aa17.95■□□□□ 0.46
DDX55-210ENST00000543016 SPATA31D1Q6ZQQ2 1576 aa17.95■□□□□ 0.46
DDX55-210ENST00000543016 PTPRTO14522 1441 aa17.92■□□□□ 0.46
DDX55-210ENST00000543016 NLRP1Q9C000 1473 aa17.92■□□□□ 0.46
DDX55-210ENST00000543016 E9PCH4 1651 aa17.92■□□□□ 0.46
DDX55-210ENST00000543016 PREX1Q8TCU6 1659 aa17.9■□□□□ 0.46
DDX55-210ENST00000543016 UHRF1BP1Q6BDS2 1440 aa17.89■□□□□ 0.46
DDX55-210ENST00000543016 A2ML1A8K2U0 1454 aa17.85■□□□□ 0.45
DDX55-210ENST00000543016 TRPM2O94759 1503 aa17.85■□□□□ 0.45
DDX55-210ENST00000543016 IDI1Q13907 227 aa17.85■□□□□ 0.45
DDX55-210ENST00000543016 CFAP65Q6ZU64 1925 aaKnown RBP17.85■□□□□ 0.45
DDX55-210ENST00000543016 SYNMO15061 1565 aa17.83■□□□□ 0.45
DDX55-210ENST00000543016 PLA2R1Q13018 1463 aa17.83■□□□□ 0.45
DDX55-210ENST00000543016 ANKRD30BQ9BXX2 1392 aa17.83■□□□□ 0.45
DDX55-210ENST00000543016 THEMISQ8N1K5 641 aaPredicted RBP17.83■□□□□ 0.44
DDX55-210ENST00000543016 SPHKAPQ2M3C7 1700 aa17.83■□□□□ 0.44
DDX55-210ENST00000543016 DHX57Q6P158 1386 aaKnown RBP17.82■□□□□ 0.44
DDX55-210ENST00000543016 STAG3Q9UJ98 1225 aa17.82■□□□□ 0.44
DDX55-210ENST00000543016 MYO3AQ8NEV4 1616 aa17.82■□□□□ 0.44
DDX55-210ENST00000543016 CCDC144AA2RUR9 1427 aa17.81■□□□□ 0.44
DDX55-210ENST00000543016 CEP170BQ9Y4F5 1589 aaPredicted RBP17.81■□□□□ 0.44
DDX55-210ENST00000543016 PIK3C2BO00750 1634 aa17.8■□□□□ 0.44
DDX55-210ENST00000543016 LMTK3Q96Q04 1460 aa17.79■□□□□ 0.44
DDX55-210ENST00000543016 KDM5AP29375 1690 aaKnown RBP17.79■□□□□ 0.44
DDX55-210ENST00000543016 ZNF142P52746 1687 aaPredicted RBP17.79■□□□□ 0.44
DDX55-210ENST00000543016 UGGT1Q9NYU2 1555 aa17.79■□□□□ 0.44
DDX55-210ENST00000543016 HDGFP51858 240 aaKnown RBP17.78■□□□□ 0.44
DDX55-210ENST00000543016 CLSPNQ9HAW4 1339 aa17.77■□□□□ 0.44
DDX55-210ENST00000543016 ADGRB3O60242 1522 aa17.75■□□□□ 0.43
DDX55-210ENST00000543016 CHGAP10645 457 aaKnown RBP17.74■□□□□ 0.43
DDX55-210ENST00000543016 NEURL4Q96JN8 1562 aa17.74■□□□□ 0.43
DDX55-210ENST00000543016 RPGRIP1LQ68CZ1 1315 aa17.73■□□□□ 0.43
DDX55-210ENST00000543016 CLTCL1P53675 1640 aa17.73■□□□□ 0.43
DDX55-210ENST00000543016 TMEM2Q9UHN6 1383 aa17.72■□□□□ 0.43
DDX55-210ENST00000543016 ANKLE2Q86XL3 938 aa17.72■□□□□ 0.43
DDX55-210ENST00000543016 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.72■□□□□ 0.43
DDX55-210ENST00000543016 EID1Q9Y6B2 187 aa17.72■□□□□ 0.43
DDX55-210ENST00000543016 UBR1Q8IWV7 1749 aa17.72■□□□□ 0.43
DDX55-210ENST00000543016 TMEM131LA2VDJ0 1609 aa17.72■□□□□ 0.43
DDX55-210ENST00000543016 ARHGAP23Q9P227 1491 aa17.7■□□□□ 0.42
DDX55-210ENST00000543016 STAC3Q96MF2 364 aa17.7■□□□□ 0.42
DDX55-210ENST00000543016 SLIT1O75093 1534 aa17.7■□□□□ 0.42
DDX55-210ENST00000543016 SPATA31E1Q6ZUB1 1445 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms