RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 HFM1A2PYH4 1435 aa17.38■□□□□ 0.37
YBX3-213ENST00000542641 NAIPQ13075 1403 aa17.38■□□□□ 0.37
YBX3-213ENST00000542641 ANKRD50Q9ULJ7 1429 aa17.38■□□□□ 0.37
YBX3-213ENST00000542641 REREQ9P2R6 1566 aa17.37■□□□□ 0.37
YBX3-213ENST00000542641 KIF3BO15066 747 aa17.37■□□□□ 0.37
YBX3-213ENST00000542641 PCGF6Q9BYE7 350 aa17.36■□□□□ 0.37
YBX3-213ENST00000542641 ERBINQ96RT1 1412 aa17.36■□□□□ 0.37
YBX3-213ENST00000542641 MLECQ14165 292 aa17.34■□□□□ 0.37
YBX3-213ENST00000542641 AGLP35573 1532 aa17.33■□□□□ 0.37
YBX3-213ENST00000542641 SETD5Q9C0A6 1442 aa17.33■□□□□ 0.36
YBX3-213ENST00000542641 GGT6Q6P531 493 aa17.33■□□□□ 0.36
YBX3-213ENST00000542641 SIGLEC1Q9BZZ2 1709 aa17.3■□□□□ 0.36
YBX3-213ENST00000542641 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.3■□□□□ 0.361e-9■■□□□ 14.4
YBX3-213ENST00000542641 GCC2Q8IWJ2 1684 aa17.29■□□□□ 0.36
YBX3-213ENST00000542641 EIF2AK4Q9P2K8 1649 aaKnown RBP17.29■□□□□ 0.36
YBX3-213ENST00000542641 RAB3GAP2Q9H2M9 1393 aa17.28■□□□□ 0.36
YBX3-213ENST00000542641 TRIM52Q96A61 297 aa17.26■□□□□ 0.35
YBX3-213ENST00000542641 ESF1Q9H501 851 aaKnown RBP17.26■□□□□ 0.35
YBX3-213ENST00000542641 BCORL1Q5H9F3 1711 aa17.25■□□□□ 0.35
YBX3-213ENST00000542641 KANK1Q14678 1352 aa17.25■□□□□ 0.35
YBX3-213ENST00000542641 ACIN1Q9UKV3 1341 aaKnown RBP17.24■□□□□ 0.35
YBX3-213ENST00000542641 WASHC2CQ9Y4E1 1318 aa17.24■□□□□ 0.35
YBX3-213ENST00000542641 HRCP23327 699 aa17.24■□□□□ 0.35
YBX3-213ENST00000542641 NUP155O75694 1391 aa17.24■□□□□ 0.35
YBX3-213ENST00000542641 RNF17Q9BXT8 1623 aaKnown RBP17.23■□□□□ 0.35
YBX3-213ENST00000542641 NPM3O75607 178 aaKnown RBP17.22■□□□□ 0.35
YBX3-213ENST00000542641 DEPDC5O75140 1603 aa17.2■□□□□ 0.34
YBX3-213ENST00000542641 MROH1Q8NDA8 1641 aa17.2■□□□□ 0.34
YBX3-213ENST00000542641 PRDM15P57071 1507 aaPredicted RBP17.2■□□□□ 0.34
YBX3-213ENST00000542641 UNC13BO14795 1591 aa17.19■□□□□ 0.34
YBX3-213ENST00000542641 KDM4FA0A1W2PPD8 638 aa17.17■□□□□ 0.34
YBX3-213ENST00000542641 CNTLNQ9NXG0 1405 aa17.17■□□□□ 0.34
YBX3-213ENST00000542641 KDM5DQ9BY66 1539 aa17.16■□□□□ 0.34
YBX3-213ENST00000542641 SLC4A1APQ9BWU0 796 aaKnown RBP17.16■□□□□ 0.34
YBX3-213ENST00000542641 ADAMTSL3P82987 1691 aa17.16■□□□□ 0.34
YBX3-213ENST00000542641 ABCC3O15438 1527 aa17.16■□□□□ 0.34
YBX3-213ENST00000542641 VWDEQ8N2E2 1590 aa17.15■□□□□ 0.34
YBX3-213ENST00000542641 RNF216Q9NWF9 866 aaPredicted RBP17.15■□□□□ 0.34
YBX3-213ENST00000542641 FAM135AQ9P2D6 1515 aa17.15■□□□□ 0.34
YBX3-213ENST00000542641 MPHOSPH9Q99550 1183 aa17.14■□□□□ 0.33
YBX3-213ENST00000542641 ZMYM3Q14202 1370 aa17.14■□□□□ 0.33
YBX3-213ENST00000542641 MADDQ8WXG6 1647 aa17.14■□□□□ 0.33
YBX3-213ENST00000542641 LMTK2Q8IWU2 1503 aa17.13■□□□□ 0.33
YBX3-213ENST00000542641 IQGAP3Q86VI3 1631 aa17.13■□□□□ 0.33
YBX3-213ENST00000542641 CLTCQ00610 1675 aaKnown RBP17.13■□□□□ 0.33
YBX3-213ENST00000542641 FER1L4A9Z1Z3 1794 aa17.12■□□□□ 0.33
YBX3-213ENST00000542641 PZPP20742 1482 aa17.12■□□□□ 0.33
YBX3-213ENST00000542641 ZC3H13Q5T200 1668 aaKnown RBP17.11■□□□□ 0.33
YBX3-213ENST00000542641 CEBPAP49715 358 aaPredicted RBP17.11■□□□□ 0.33
YBX3-213ENST00000542641 PKD2Q13563 968 aa17.11■□□□□ 0.33
YBX3-213ENST00000542641 CEP152O94986 1710 aa17.1■□□□□ 0.33
YBX3-213ENST00000542641 RIMS1Q86UR5 1692 aaKnown RBP17.09■□□□□ 0.33
YBX3-213ENST00000542641 ARHGAP31Q2M1Z3 1444 aa17.08■□□□□ 0.32
YBX3-213ENST00000542641 HOXD11P31277 338 aaPredicted RBP17.08■□□□□ 0.32
YBX3-213ENST00000542641 POTEDQ86YR6 584 aa17.08■□□□□ 0.32
YBX3-213ENST00000542641 TET3O43151 1660 aa17.07■□□□□ 0.32
YBX3-213ENST00000542641 CAMSAP1Q5T5Y3 1602 aa17.07■□□□□ 0.32
YBX3-213ENST00000542641 EFCAB6Q5THR3 1501 aa17.07■□□□□ 0.32
YBX3-213ENST00000542641 PTPRMP28827 1452 aa17.07■□□□□ 0.32
YBX3-213ENST00000542641 NPATQ14207 1427 aa17.07■□□□□ 0.32
YBX3-213ENST00000542641 FBXO31Q5XUX0 539 aaPredicted RBP17.07■□□□□ 0.32
YBX3-213ENST00000542641 MROH2AA6NES4 1674 aa17.07■□□□□ 0.32
YBX3-213ENST00000542641 RPRD2Q5VT52 1461 aaKnown RBP17.05■□□□□ 0.32
YBX3-213ENST00000542641 C3P01024 1663 aa17.03■□□□□ 0.32
YBX3-213ENST00000542641 DHX57Q6P158 1386 aaKnown RBP17.02■□□□□ 0.31
YBX3-213ENST00000542641 E9PCH4 1651 aa17.01■□□□□ 0.31
YBX3-213ENST00000542641 ERVK-7P63135 1459 aa17■□□□□ 0.31
YBX3-213ENST00000542641 TNRQ92752 1358 aa16.99■□□□□ 0.31
YBX3-213ENST00000542641 NOS1P29475 1434 aa16.98■□□□□ 0.31
YBX3-213ENST00000542641 PTPRTO14522 1441 aa16.97■□□□□ 0.31
YBX3-213ENST00000542641 SPATA31D1Q6ZQQ2 1576 aa16.97■□□□□ 0.31
YBX3-213ENST00000542641 PREX1Q8TCU6 1659 aa16.97■□□□□ 0.31
YBX3-213ENST00000542641 CFAP65Q6ZU64 1925 aaKnown RBP16.96■□□□□ 0.31
YBX3-213ENST00000542641 SLC52A1Q9NWF4 448 aa16.96■□□□□ 0.31
YBX3-213ENST00000542641 PLA2R1Q13018 1463 aa16.95■□□□□ 0.3
YBX3-213ENST00000542641 ANKRD30BQ9BXX2 1392 aa16.95■□□□□ 0.3
YBX3-213ENST00000542641 IDI1Q13907 227 aa16.94■□□□□ 0.3
YBX3-213ENST00000542641 CCER1Q8TC90 406 aaPredicted RBP16.94■□□□□ 0.3
YBX3-213ENST00000542641 SYNMO15061 1565 aa16.92■□□□□ 0.3
YBX3-213ENST00000542641 SPHKAPQ2M3C7 1700 aa16.92■□□□□ 0.3
YBX3-213ENST00000542641 TRPM2O94759 1503 aa16.91■□□□□ 0.3
YBX3-213ENST00000542641 CCDC144AA2RUR9 1427 aa16.91■□□□□ 0.3
YBX3-213ENST00000542641 STAG3Q9UJ98 1225 aa16.91■□□□□ 0.3
YBX3-213ENST00000542641 NLRP1Q9C000 1473 aa16.91■□□□□ 0.3
YBX3-213ENST00000542641 CHGAP10645 457 aaKnown RBP16.9■□□□□ 0.3
YBX3-213ENST00000542641 UGGT1Q9NYU2 1555 aa16.89■□□□□ 0.3
YBX3-213ENST00000542641 UHRF1BP1Q6BDS2 1440 aa16.88■□□□□ 0.29
YBX3-213ENST00000542641 SETD1BQ9UPS6 1966 aaKnown RBP16.88■□□□□ 0.29
YBX3-213ENST00000542641 SIN3AQ96ST3 1273 aa16.87■□□□□ 0.29
YBX3-213ENST00000542641 CLTCL1P53675 1640 aa16.86■□□□□ 0.29
YBX3-213ENST00000542641 NEUROD1Q13562 356 aa16.86■□□□□ 0.29
YBX3-213ENST00000542641 CLSPNQ9HAW4 1339 aa16.86■□□□□ 0.29
YBX3-213ENST00000542641 A2ML1A8K2U0 1454 aa16.86■□□□□ 0.29
YBX3-213ENST00000542641 PIK3C2BO00750 1634 aa16.85■□□□□ 0.29
YBX3-213ENST00000542641 MYO3AQ8NEV4 1616 aa16.85■□□□□ 0.29
YBX3-213ENST00000542641 THEMISQ8N1K5 641 aaPredicted RBP16.85■□□□□ 0.29
YBX3-213ENST00000542641 CEP170BQ9Y4F5 1589 aaPredicted RBP16.84■□□□□ 0.29
YBX3-213ENST00000542641 RGL3Q3MIN7 710 aa16.83■□□□□ 0.28
YBX3-213ENST00000542641 ZNF326Q5BKZ1 582 aaKnown RBP16.83■□□□□ 0.28
YBX3-213ENST00000542641 ADGRB3O60242 1522 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms