RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 ATP7AQ04656 1500 aa13.61□□□□□ -0.23
CLIP1-212ENST00000540304 AFAP1Q8N556 730 aa13.61□□□□□ -0.23
CLIP1-212ENST00000540304 SCAPERQ9BY12 1400 aa13.6□□□□□ -0.23
CLIP1-212ENST00000540304 DDX10Q13206 875 aaKnown RBP13.6□□□□□ -0.23
CLIP1-212ENST00000540304 NBPF8Q3BBV2 869 aa13.59□□□□□ -0.23
CLIP1-212ENST00000540304 EIF4G2P78344 907 aaKnown RBP eCLIP13.59□□□□□ -0.23
CLIP1-212ENST00000540304 CD109Q6YHK3 1445 aa13.58□□□□□ -0.24
CLIP1-212ENST00000540304 HSPA5P11021 654 aaKnown RBP13.58□□□□□ -0.24
CLIP1-212ENST00000540304 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.58□□□□□ -0.249e-7■□□□□ 10.3
CLIP1-212ENST00000540304 DEPDC5O75140 1603 aa13.57□□□□□ -0.24
CLIP1-212ENST00000540304 ANO8Q9HCE9 1232 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-212ENST00000540304 EIF2AK4Q9P2K8 1649 aaKnown RBP13.56□□□□□ -0.24
CLIP1-212ENST00000540304 ZNF518AQ6AHZ1 1483 aa13.56□□□□□ -0.24
CLIP1-212ENST00000540304 CCDC144AA2RUR9 1427 aa13.55□□□□□ -0.24
CLIP1-212ENST00000540304 UHRF1BP1Q6BDS2 1440 aa13.55□□□□□ -0.24
CLIP1-212ENST00000540304 RIMBP3CA6NJZ7 1639 aa13.55□□□□□ -0.24
CLIP1-212ENST00000540304 RIMBP3BA6NNM3 1639 aa13.55□□□□□ -0.24
CLIP1-212ENST00000540304 RIMBP3Q9UFD9 1639 aa13.55□□□□□ -0.24
CLIP1-212ENST00000540304 ATP10AO60312 1499 aa13.54□□□□□ -0.24
CLIP1-212ENST00000540304 KIDINS220Q9ULH0 1771 aa13.54□□□□□ -0.24
CLIP1-212ENST00000540304 PLA2R1Q13018 1463 aa13.54□□□□□ -0.24
CLIP1-212ENST00000540304 KDM5CP41229 1560 aa13.52□□□□□ -0.24
CLIP1-212ENST00000540304 POLR1AO95602 1720 aaPredicted RBP13.52□□□□□ -0.24
CLIP1-212ENST00000540304 PLPPR3Q6T4P5 718 aa13.52□□□□□ -0.24
CLIP1-212ENST00000540304 SPATA31E1Q6ZUB1 1445 aa13.52□□□□□ -0.24
CLIP1-212ENST00000540304 POGZQ7Z3K3 1410 aa13.52□□□□□ -0.25
CLIP1-212ENST00000540304 RALGAPBQ86X10 1494 aa13.52□□□□□ -0.25
CLIP1-212ENST00000540304 E9PCH4 1651 aa13.52□□□□□ -0.25
CLIP1-212ENST00000540304 DHX29Q7Z478 1369 aaKnown RBP13.51□□□□□ -0.25
CLIP1-212ENST00000540304 TET3O43151 1660 aa13.51□□□□□ -0.25
CLIP1-212ENST00000540304 NEO1Q92859 1461 aa13.51□□□□□ -0.25
CLIP1-212ENST00000540304 MYT1LQ9UL68 1186 aa13.51□□□□□ -0.25
CLIP1-212ENST00000540304 VWDEQ8N2E2 1590 aa13.5□□□□□ -0.25
CLIP1-212ENST00000540304 MAP3K4Q9Y6R4 1608 aa13.5□□□□□ -0.25
CLIP1-212ENST00000540304 PRDM15P57071 1507 aaPredicted RBP13.5□□□□□ -0.25
CLIP1-212ENST00000540304 WASHC2AQ641Q2 1341 aa13.5□□□□□ -0.25
CLIP1-212ENST00000540304 ZNF326Q5BKZ1 582 aaKnown RBP13.49□□□□□ -0.25
CLIP1-212ENST00000540304 CYB5RLQ6IPT4 315 aa13.49□□□□□ -0.25
CLIP1-212ENST00000540304 HECW2Q9P2P5 1572 aa13.49□□□□□ -0.25
CLIP1-212ENST00000540304 KANK1Q14678 1352 aa13.48□□□□□ -0.25
CLIP1-212ENST00000540304 MROH1Q8NDA8 1641 aa13.48□□□□□ -0.25
CLIP1-212ENST00000540304 GLI2P10070 1586 aa13.48□□□□□ -0.25
CLIP1-212ENST00000540304 MLH3Q9UHC1 1453 aa13.48□□□□□ -0.25
CLIP1-212ENST00000540304 SPHKAPQ2M3C7 1700 aa13.48□□□□□ -0.25
CLIP1-212ENST00000540304 DCAF11Q8TEB1 546 aa13.47□□□□□ -0.25
CLIP1-212ENST00000540304 ANP32CO43423 234 aa13.47□□□□□ -0.25
CLIP1-212ENST00000540304 TRPM2O94759 1503 aa13.47□□□□□ -0.25
CLIP1-212ENST00000540304 USP47Q96K76 1375 aa13.47□□□□□ -0.25
CLIP1-212ENST00000540304 A2MP01023 1474 aa13.47□□□□□ -0.25
CLIP1-212ENST00000540304 KIF3BO15066 747 aa13.46□□□□□ -0.25
CLIP1-212ENST00000540304 CCDC7Q96M83 1385 aa13.46□□□□□ -0.25
CLIP1-212ENST00000540304 RNF17Q9BXT8 1623 aaKnown RBP13.46□□□□□ -0.26
CLIP1-212ENST00000540304 UBE2Q2Q8WVN8 375 aa13.45□□□□□ -0.26
CLIP1-212ENST00000540304 KDM2AQ9Y2K7 1162 aa13.45□□□□□ -0.26
CLIP1-212ENST00000540304 TRPM1Q7Z4N2 1603 aa13.45□□□□□ -0.26
CLIP1-212ENST00000540304 CEP152O94986 1710 aa13.45□□□□□ -0.26
CLIP1-212ENST00000540304 PRAG1Q86YV5 1406 aa13.45□□□□□ -0.26
CLIP1-212ENST00000540304 PTPRTO14522 1441 aa13.44□□□□□ -0.26
CLIP1-212ENST00000540304 BCORL1Q5H9F3 1711 aa13.44□□□□□ -0.26
CLIP1-212ENST00000540304 ABCA6Q8N139 1617 aa13.44□□□□□ -0.26
CLIP1-212ENST00000540304 CNTLNQ9NXG0 1405 aa13.44□□□□□ -0.26
CLIP1-212ENST00000540304 FRMPD1Q5SYB0 1578 aa13.43□□□□□ -0.26
CLIP1-212ENST00000540304 C11orf95C9JLR9 678 aaPredicted RBP13.43□□□□□ -0.26
CLIP1-212ENST00000540304 CCER2I3L3R5 266 aa13.43□□□□□ -0.26
CLIP1-212ENST00000540304 RICTORQ6R327 1708 aa13.43□□□□□ -0.26
CLIP1-212ENST00000540304 EFCAB6Q5THR3 1501 aa13.42□□□□□ -0.26
CLIP1-212ENST00000540304 DIP2BQ9P265 1576 aa13.42□□□□□ -0.26
CLIP1-212ENST00000540304 CLTCL1P53675 1640 aa13.42□□□□□ -0.26
CLIP1-212ENST00000540304 RGL3Q3MIN7 710 aa13.42□□□□□ -0.26
CLIP1-212ENST00000540304 CARD11Q9BXL7 1154 aa13.42□□□□□ -0.26
CLIP1-212ENST00000540304 LMTK2Q8IWU2 1503 aa13.42□□□□□ -0.26
CLIP1-212ENST00000540304 KIF7Q2M1P5 1343 aa13.41□□□□□ -0.26
CLIP1-212ENST00000540304 LAMC1P11047 1609 aa13.41□□□□□ -0.26
CLIP1-212ENST00000540304 PPRC1Q5VV67 1664 aaKnown RBP13.4□□□□□ -0.26
CLIP1-212ENST00000540304 ROCK2O75116 1388 aaKnown RBP13.4□□□□□ -0.26
CLIP1-212ENST00000540304 DIP2CQ9Y2E4 1556 aa13.39□□□□□ -0.27
CLIP1-212ENST00000540304 NEURL4Q96JN8 1562 aa13.38□□□□□ -0.27
CLIP1-212ENST00000540304 ARID4BQ4LE39 1312 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-212ENST00000540304 RAPGEF3O95398 923 aa13.38□□□□□ -0.27
CLIP1-212ENST00000540304 GPRASP1Q5JY77 1395 aa13.37□□□□□ -0.27
CLIP1-212ENST00000540304 POTEDQ86YR6 584 aa13.37□□□□□ -0.27
CLIP1-212ENST00000540304 MADDQ8WXG6 1647 aa13.36□□□□□ -0.27
CLIP1-212ENST00000540304 FAM69CQ0P6D2 419 aa13.35□□□□□ -0.27
CLIP1-212ENST00000540304 KIF1BO60333 1816 aa13.35□□□□□ -0.27
CLIP1-212ENST00000540304 ZMYM4Q5VZL5 1548 aa13.34□□□□□ -0.27
CLIP1-212ENST00000540304 TSPOAP1O95153 1857 aa13.34□□□□□ -0.27
CLIP1-212ENST00000540304 STAC3Q96MF2 364 aa13.34□□□□□ -0.27
CLIP1-212ENST00000540304 ABCC3O15438 1527 aa13.33□□□□□ -0.27
CLIP1-212ENST00000540304 ST20-MTHFSA0A0A6YYL1 179 aa13.33□□□□□ -0.28
CLIP1-212ENST00000540304 NBPF1Q3BBV0 1214 aa13.32□□□□□ -0.28
CLIP1-212ENST00000540304 UGGT1Q9NYU2 1555 aa13.32□□□□□ -0.28
CLIP1-212ENST00000540304 CAMSAP1Q5T5Y3 1602 aa13.32□□□□□ -0.28
CLIP1-212ENST00000540304 ZC3H13Q5T200 1668 aaKnown RBP13.32□□□□□ -0.28
CLIP1-212ENST00000540304 GGT6Q6P531 493 aa13.31□□□□□ -0.28
CLIP1-212ENST00000540304 POLR3GLQ9BT43 218 aa13.31□□□□□ -0.28
CLIP1-212ENST00000540304 PODXL2Q9NZ53 605 aa13.31□□□□□ -0.28
CLIP1-212ENST00000540304 NPATQ14207 1427 aa13.31□□□□□ -0.28
CLIP1-212ENST00000540304 YEATS2Q9ULM3 1422 aa13.31□□□□□ -0.28
CLIP1-212ENST00000540304 IFT172Q9UG01 1749 aa13.3□□□□□ -0.28
CLIP1-212ENST00000540304 MROH2AA6NES4 1674 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms