RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 NCOA1Q15788 1441 aa28.13■■■□□ 2.09
SNRPA1-203ENST00000540017 ANKRD30AQ9BXX3 1397 aa28.12■■■□□ 2.09
SNRPA1-203ENST00000540017 EIF2AK4Q9P2K8 1649 aaKnown RBP28.12■■■□□ 2.09
SNRPA1-203ENST00000540017 ADGRL2O95490 1459 aa28.11■■■□□ 2.09
SNRPA1-203ENST00000540017 RNF17Q9BXT8 1623 aaKnown RBP28.1■■■□□ 2.09
SNRPA1-203ENST00000540017 ERBINQ96RT1 1412 aa28.08■■■□□ 2.09
SNRPA1-203ENST00000540017 MROH1Q8NDA8 1641 aa28.07■■■□□ 2.08
SNRPA1-203ENST00000540017 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.07■■■□□ 2.08
SNRPA1-203ENST00000540017 KDM5DQ9BY66 1539 aa28.07■■■□□ 2.08
SNRPA1-203ENST00000540017 PREX1Q8TCU6 1659 aa28.06■■■□□ 2.08
SNRPA1-203ENST00000540017 HSPA2P54652 639 aa28.05■■■□□ 2.08
SNRPA1-203ENST00000540017 RRBP1Q9P2E9 1410 aaKnown RBP28.05■■■□□ 2.08
SNRPA1-203ENST00000540017 WASHC2CQ9Y4E1 1318 aa28.05■■■□□ 2.08
SNRPA1-203ENST00000540017 FAM135AQ9P2D6 1515 aa28.03■■■□□ 2.08
SNRPA1-203ENST00000540017 SETD1BQ9UPS6 1966 aaKnown RBP28.03■■■□□ 2.08
SNRPA1-203ENST00000540017 NPATQ14207 1427 aa28.02■■■□□ 2.08
SNRPA1-203ENST00000540017 ITGAEP38570 1179 aa28.02■■■□□ 2.08
SNRPA1-203ENST00000540017 ABCC3O15438 1527 aa28■■■□□ 2.07
SNRPA1-203ENST00000540017 UHRF1BP1Q6BDS2 1440 aa28■■■□□ 2.07
SNRPA1-203ENST00000540017 FBXO31Q5XUX0 539 aaPredicted RBP27.97■■■□□ 2.07
SNRPA1-203ENST00000540017 PRDM15P57071 1507 aaPredicted RBP27.97■■■□□ 2.07
SNRPA1-203ENST00000540017 DEPDC5O75140 1603 aa27.96■■■□□ 2.07
SNRPA1-203ENST00000540017 ROCK1Q13464 1354 aa27.96■■■□□ 2.07
SNRPA1-203ENST00000540017 CEP152O94986 1710 aa27.95■■■□□ 2.06
SNRPA1-203ENST00000540017 PZPP20742 1482 aa27.95■■■□□ 2.06
SNRPA1-203ENST00000540017 ZC3H13Q5T200 1668 aaKnown RBP27.94■■■□□ 2.06
SNRPA1-203ENST00000540017 ANKRD50Q9ULJ7 1429 aa27.94■■■□□ 2.06
SNRPA1-203ENST00000540017 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.94■■■□□ 2.062e-7■□□□□ 8
SNRPA1-203ENST00000540017 CAMSAP1Q5T5Y3 1602 aa27.89■■■□□ 2.05
SNRPA1-203ENST00000540017 MYO3AQ8NEV4 1616 aa27.89■■■□□ 2.05
SNRPA1-203ENST00000540017 VWDEQ8N2E2 1590 aa27.87■■■□□ 2.05
SNRPA1-203ENST00000540017 TNRQ92752 1358 aa27.86■■■□□ 2.05
SNRPA1-203ENST00000540017 KANK1Q14678 1352 aa27.85■■■□□ 2.05
SNRPA1-203ENST00000540017 ZNF142P52746 1687 aaPredicted RBP27.82■■■□□ 2.04
SNRPA1-203ENST00000540017 LMTK2Q8IWU2 1503 aa27.82■■■□□ 2.04
SNRPA1-203ENST00000540017 CEP170BQ9Y4F5 1589 aaPredicted RBP27.82■■■□□ 2.04
SNRPA1-203ENST00000540017 ARHGAP31Q2M1Z3 1444 aa27.81■■■□□ 2.04
SNRPA1-203ENST00000540017 ERVK-7P63135 1459 aa27.8■■■□□ 2.04
SNRPA1-203ENST00000540017 SPATA31D1Q6ZQQ2 1576 aa27.8■■■□□ 2.04
SNRPA1-203ENST00000540017 STRCQ7RTU9 1775 aa27.8■■■□□ 2.04
SNRPA1-203ENST00000540017 CFAP65Q6ZU64 1925 aaKnown RBP27.79■■■□□ 2.04
SNRPA1-203ENST00000540017 A2ML1A8K2U0 1454 aa27.78■■■□□ 2.04
SNRPA1-203ENST00000540017 UNC13BO14795 1591 aa27.77■■■□□ 2.04
SNRPA1-203ENST00000540017 NAIPQ13075 1403 aa27.74■■■□□ 2.03
SNRPA1-203ENST00000540017 EFCAB6Q5THR3 1501 aa27.72■■■□□ 2.03
SNRPA1-203ENST00000540017 NLRP1Q9C000 1473 aa27.72■■■□□ 2.03
SNRPA1-203ENST00000540017 GCC2Q8IWJ2 1684 aa27.68■■■□□ 2.02
SNRPA1-203ENST00000540017 NUP155O75694 1391 aa27.67■■■□□ 2.02
SNRPA1-203ENST00000540017 TET3O43151 1660 aa27.67■■■□□ 2.02
SNRPA1-203ENST00000540017 IQGAP3Q86VI3 1631 aa27.67■■■□□ 2.02
SNRPA1-203ENST00000540017 HFM1A2PYH4 1435 aa27.67■■■□□ 2.02
SNRPA1-203ENST00000540017 NCKAP5LQ9HCH0 1330 aa27.67■■■□□ 2.02
SNRPA1-203ENST00000540017 PLA2R1Q13018 1463 aa27.66■■■□□ 2.02
SNRPA1-203ENST00000540017 UGGT1Q9NYU2 1555 aa27.65■■■□□ 2.02
SNRPA1-203ENST00000540017 NOS1P29475 1434 aa27.64■■■□□ 2.02
SNRPA1-203ENST00000540017 SYNMO15061 1565 aa27.63■■■□□ 2.01
SNRPA1-203ENST00000540017 DMRT2Q9Y5R5 561 aa27.62■■■□□ 2.01
SNRPA1-203ENST00000540017 PTPRTO14522 1441 aa27.61■■■□□ 2.01
SNRPA1-203ENST00000540017 RPRD2Q5VT52 1461 aaKnown RBP27.61■■■□□ 2.01
SNRPA1-203ENST00000540017 THEMISQ8N1K5 641 aaPredicted RBP27.6■■■□□ 2.01
SNRPA1-203ENST00000540017 E9PCH4 1651 aa27.59■■■□□ 2.01
SNRPA1-203ENST00000540017 PKD2Q13563 968 aa27.58■■■□□ 2.01
SNRPA1-203ENST00000540017 UBR1Q8IWV7 1749 aa27.58■■■□□ 2.01
SNRPA1-203ENST00000540017 IDI1Q13907 227 aa27.57■■■□□ 2
SNRPA1-203ENST00000540017 PIK3C2BO00750 1634 aa27.56■■■□□ 2
SNRPA1-203ENST00000540017 NEURL4Q96JN8 1562 aa27.52■■■□□ 2
SNRPA1-203ENST00000540017 POLR1AO95602 1720 aaPredicted RBP27.51■■□□□ 1.99
SNRPA1-203ENST00000540017 ANKLE2Q86XL3 938 aa27.51■■□□□ 1.99
SNRPA1-203ENST00000540017 TRIM52Q96A61 297 aa27.49■■□□□ 1.99
SNRPA1-203ENST00000540017 SLC52A1Q9NWF4 448 aa27.49■■□□□ 1.99
SNRPA1-203ENST00000540017 ARHGAP23Q9P227 1491 aa27.46■■□□□ 1.99
SNRPA1-203ENST00000540017 STAG3Q9UJ98 1225 aa27.46■■□□□ 1.99
SNRPA1-203ENST00000540017 SLIT1O75093 1534 aa27.46■■□□□ 1.99
SNRPA1-203ENST00000540017 KDM5AP29375 1690 aaKnown RBP27.45■■□□□ 1.98
SNRPA1-203ENST00000540017 LTKP29376 864 aa27.44■■□□□ 1.98
SNRPA1-203ENST00000540017 ADGRB3O60242 1522 aa27.44■■□□□ 1.98
SNRPA1-203ENST00000540017 MED14O60244 1454 aa27.44■■□□□ 1.98
SNRPA1-203ENST00000540017 TMEM2Q9UHN6 1383 aa27.42■■□□□ 1.98
SNRPA1-203ENST00000540017 NPHP4O75161 1426 aaPredicted RBP27.41■■□□□ 1.98
SNRPA1-203ENST00000540017 SETD5Q9C0A6 1442 aa27.41■■□□□ 1.98
SNRPA1-203ENST00000540017 TXNDC2Q86VQ3 553 aa27.4■■□□□ 1.98
SNRPA1-203ENST00000540017 LTBP4Q8N2S1 1624 aa27.4■■□□□ 1.98
SNRPA1-203ENST00000540017 ZNF335Q9H4Z2 1342 aaPredicted RBP27.4■■□□□ 1.98
SNRPA1-203ENST00000540017 SCAF11Q99590 1463 aaKnown RBP27.39■■□□□ 1.98
SNRPA1-203ENST00000540017 SPHKAPQ2M3C7 1700 aa27.38■■□□□ 1.97
SNRPA1-203ENST00000540017 TMEM131LA2VDJ0 1609 aa27.38■■□□□ 1.97
SNRPA1-203ENST00000540017 CERKQ8TCT0 537 aa27.38■■□□□ 1.97
SNRPA1-203ENST00000540017 SLC4A1APQ9BWU0 796 aaKnown RBP27.38■■□□□ 1.97
SNRPA1-203ENST00000540017 MYO5BQ9ULV0 1848 aa27.38■■□□□ 1.97
SNRPA1-203ENST00000540017 IQGAP1P46940 1657 aa27.36■■□□□ 1.97
SNRPA1-203ENST00000540017 CHGAP10645 457 aaKnown RBP27.34■■□□□ 1.97
SNRPA1-203ENST00000540017 EID1Q9Y6B2 187 aa27.34■■□□□ 1.97
SNRPA1-203ENST00000540017 RAB3GAP2Q9H2M9 1393 aa27.33■■□□□ 1.97
SNRPA1-203ENST00000540017 ILDR1Q86SU0 546 aaPredicted RBP27.31■■□□□ 1.96
SNRPA1-203ENST00000540017 ZFYVE9O95405 1425 aa27.31■■□□□ 1.96
SNRPA1-203ENST00000540017 TRPM2O94759 1503 aa27.31■■□□□ 1.96
SNRPA1-203ENST00000540017 FOXD1Q16676 465 aa27.3■■□□□ 1.96
SNRPA1-203ENST00000540017 MPHOSPH9Q99550 1183 aa27.29■■□□□ 1.96
SNRPA1-203ENST00000540017 CLTCL1P53675 1640 aa27.29■■□□□ 1.96
SNRPA1-203ENST00000540017 RIMS2Q9UQ26 1411 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms