RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 EIF2AK4Q9P2K8 1649 aaKnown RBP24.08■■□□□ 1.44
RPAIN-206ENST00000539417 RNF17Q9BXT8 1623 aaKnown RBP24.06■■□□□ 1.44
RPAIN-206ENST00000539417 C3P01024 1663 aa24.06■■□□□ 1.44
RPAIN-206ENST00000539417 ERBINQ96RT1 1412 aa24.05■■□□□ 1.44
RPAIN-206ENST00000539417 ESF1Q9H501 851 aaKnown RBP24.04■■□□□ 1.44
RPAIN-206ENST00000539417 CNTLNQ9NXG0 1405 aa24.02■■□□□ 1.44
RPAIN-206ENST00000539417 MROH2AA6NES4 1674 aa24.02■■□□□ 1.44
RPAIN-206ENST00000539417 ROCK1Q13464 1354 aa24.01■■□□□ 1.43
RPAIN-206ENST00000539417 ZMYM3Q14202 1370 aa24.01■■□□□ 1.43
RPAIN-206ENST00000539417 ANKRD50Q9ULJ7 1429 aa23.99■■□□□ 1.43
RPAIN-206ENST00000539417 PPP6R1Q9UPN7 881 aa23.99■■□□□ 1.43
RPAIN-206ENST00000539417 KDM5DQ9BY66 1539 aa23.99■■□□□ 1.43
RPAIN-206ENST00000539417 DEPDC5O75140 1603 aa23.98■■□□□ 1.43
RPAIN-206ENST00000539417 WASHC2CQ9Y4E1 1318 aa23.97■■□□□ 1.43
RPAIN-206ENST00000539417 ABCC3O15438 1527 aa23.96■■□□□ 1.43
RPAIN-206ENST00000539417 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.96■■□□□ 1.432e-6■□□□□ 10.3
RPAIN-206ENST00000539417 CEP152O94986 1710 aa23.96■■□□□ 1.43
RPAIN-206ENST00000539417 PRDM15P57071 1507 aaPredicted RBP23.96■■□□□ 1.43
RPAIN-206ENST00000539417 LMTK3Q96Q04 1460 aa23.92■■□□□ 1.42
RPAIN-206ENST00000539417 FAM135AQ9P2D6 1515 aa23.91■■□□□ 1.42
RPAIN-206ENST00000539417 FBXO31Q5XUX0 539 aaPredicted RBP23.91■■□□□ 1.42
RPAIN-206ENST00000539417 ZC3H13Q5T200 1668 aaKnown RBP23.9■■□□□ 1.42
RPAIN-206ENST00000539417 VWDEQ8N2E2 1590 aa23.9■■□□□ 1.42
RPAIN-206ENST00000539417 NAIPQ13075 1403 aa23.89■■□□□ 1.42
RPAIN-206ENST00000539417 CAMSAP1Q5T5Y3 1602 aa23.87■■□□□ 1.41
RPAIN-206ENST00000539417 PZPP20742 1482 aa23.87■■□□□ 1.41
RPAIN-206ENST00000539417 PREX1Q8TCU6 1659 aa23.87■■□□□ 1.41
RPAIN-206ENST00000539417 UNC13BO14795 1591 aa23.85■■□□□ 1.41
RPAIN-206ENST00000539417 NPATQ14207 1427 aa23.85■■□□□ 1.41
RPAIN-206ENST00000539417 GCC2Q8IWJ2 1684 aa23.85■■□□□ 1.41
RPAIN-206ENST00000539417 HSPA2P54652 639 aa23.85■■□□□ 1.41
RPAIN-206ENST00000539417 SETD1BQ9UPS6 1966 aaKnown RBP23.82■■□□□ 1.4
RPAIN-206ENST00000539417 KANK1Q14678 1352 aa23.82■■□□□ 1.4
RPAIN-206ENST00000539417 HFM1A2PYH4 1435 aa23.82■■□□□ 1.4
RPAIN-206ENST00000539417 LMTK2Q8IWU2 1503 aa23.82■■□□□ 1.4
RPAIN-206ENST00000539417 CFAP65Q6ZU64 1925 aaKnown RBP23.81■■□□□ 1.4
RPAIN-206ENST00000539417 MYO3AQ8NEV4 1616 aa23.8■■□□□ 1.4
RPAIN-206ENST00000539417 UHRF1BP1Q6BDS2 1440 aa23.8■■□□□ 1.4
RPAIN-206ENST00000539417 ERVK-7P63135 1459 aa23.78■■□□□ 1.4
RPAIN-206ENST00000539417 ARHGAP31Q2M1Z3 1444 aa23.77■■□□□ 1.4
RPAIN-206ENST00000539417 TNRQ92752 1358 aa23.77■■□□□ 1.4
RPAIN-206ENST00000539417 SPATA31D1Q6ZQQ2 1576 aa23.76■■□□□ 1.39
RPAIN-206ENST00000539417 EFCAB6Q5THR3 1501 aa23.76■■□□□ 1.39
RPAIN-206ENST00000539417 IQGAP3Q86VI3 1631 aa23.75■■□□□ 1.39
RPAIN-206ENST00000539417 NUP155O75694 1391 aa23.75■■□□□ 1.39
RPAIN-206ENST00000539417 TET3O43151 1660 aa23.73■■□□□ 1.39
RPAIN-206ENST00000539417 CEP170BQ9Y4F5 1589 aaPredicted RBP23.71■■□□□ 1.39
RPAIN-206ENST00000539417 ZNF142P52746 1687 aaPredicted RBP23.71■■□□□ 1.39
RPAIN-206ENST00000539417 E9PCH4 1651 aa23.7■■□□□ 1.38
RPAIN-206ENST00000539417 SYNMO15061 1565 aa23.68■■□□□ 1.38
RPAIN-206ENST00000539417 A2ML1A8K2U0 1454 aa23.68■■□□□ 1.38
RPAIN-206ENST00000539417 NOS1P29475 1434 aa23.66■■□□□ 1.38
RPAIN-206ENST00000539417 STRCQ7RTU9 1775 aa23.66■■□□□ 1.38
RPAIN-206ENST00000539417 SETD5Q9C0A6 1442 aa23.64■■□□□ 1.38
RPAIN-206ENST00000539417 TRIM52Q96A61 297 aa23.64■■□□□ 1.38
RPAIN-206ENST00000539417 NLRP1Q9C000 1473 aa23.64■■□□□ 1.38
RPAIN-206ENST00000539417 RPRD2Q5VT52 1461 aaKnown RBP23.63■■□□□ 1.37
RPAIN-206ENST00000539417 RAB3GAP2Q9H2M9 1393 aa23.6■■□□□ 1.37
RPAIN-206ENST00000539417 UGGT1Q9NYU2 1555 aa23.6■■□□□ 1.37
RPAIN-206ENST00000539417 PIK3C2BO00750 1634 aa23.6■■□□□ 1.37
RPAIN-206ENST00000539417 IDI1Q13907 227 aa23.59■■□□□ 1.37
RPAIN-206ENST00000539417 UBR1Q8IWV7 1749 aa23.58■■□□□ 1.37
RPAIN-206ENST00000539417 NCKAP5LQ9HCH0 1330 aa23.57■■□□□ 1.36
RPAIN-206ENST00000539417 PKD2Q13563 968 aa23.54■■□□□ 1.36
RPAIN-206ENST00000539417 SLC4A1APQ9BWU0 796 aaKnown RBP23.54■■□□□ 1.36
RPAIN-206ENST00000539417 PLA2R1Q13018 1463 aa23.54■■□□□ 1.36
RPAIN-206ENST00000539417 FOXD1Q16676 465 aa23.53■■□□□ 1.36
RPAIN-206ENST00000539417 SPHKAPQ2M3C7 1700 aa23.52■■□□□ 1.36
RPAIN-206ENST00000539417 PTPRTO14522 1441 aa23.51■■□□□ 1.35
RPAIN-206ENST00000539417 THEMISQ8N1K5 641 aaPredicted RBP23.51■■□□□ 1.35
RPAIN-206ENST00000539417 MPHOSPH9Q99550 1183 aa23.5■■□□□ 1.35
RPAIN-206ENST00000539417 SLC52A1Q9NWF4 448 aa23.49■■□□□ 1.35
RPAIN-206ENST00000539417 NEURL4Q96JN8 1562 aa23.48■■□□□ 1.35
RPAIN-206ENST00000539417 ADGRB3O60242 1522 aa23.48■■□□□ 1.35
RPAIN-206ENST00000539417 MYO5BQ9ULV0 1848 aa23.48■■□□□ 1.35
RPAIN-206ENST00000539417 POLR1AO95602 1720 aaPredicted RBP23.46■■□□□ 1.35
RPAIN-206ENST00000539417 TMEM131LA2VDJ0 1609 aa23.46■■□□□ 1.35
RPAIN-206ENST00000539417 ARHGAP23Q9P227 1491 aa23.45■■□□□ 1.35
RPAIN-206ENST00000539417 CLTCL1P53675 1640 aa23.45■■□□□ 1.35
RPAIN-206ENST00000539417 KDM5AP29375 1690 aaKnown RBP23.44■■□□□ 1.34
RPAIN-206ENST00000539417 LTKP29376 864 aa23.44■■□□□ 1.34
RPAIN-206ENST00000539417 STAG3Q9UJ98 1225 aa23.44■■□□□ 1.34
RPAIN-206ENST00000539417 SLIT1O75093 1534 aa23.44■■□□□ 1.34
RPAIN-206ENST00000539417 TRPM2O94759 1503 aa23.44■■□□□ 1.34
RPAIN-206ENST00000539417 CHGAP10645 457 aaKnown RBP23.43■■□□□ 1.34
RPAIN-206ENST00000539417 TMEM2Q9UHN6 1383 aa23.42■■□□□ 1.34
RPAIN-206ENST00000539417 ANKLE2Q86XL3 938 aa23.42■■□□□ 1.34
RPAIN-206ENST00000539417 TRIM26Q12899 539 aaPredicted RBP23.41■■□□□ 1.34
RPAIN-206ENST00000539417 DMRT2Q9Y5R5 561 aa23.39■■□□□ 1.34
RPAIN-206ENST00000539417 HRCP23327 699 aa23.38■■□□□ 1.33
RPAIN-206ENST00000539417 TXNDC2Q86VQ3 553 aa23.38■■□□□ 1.33
RPAIN-206ENST00000539417 SCAF11Q99590 1463 aaKnown RBP23.38■■□□□ 1.33
RPAIN-206ENST00000539417 MED14O60244 1454 aa23.37■■□□□ 1.33
RPAIN-206ENST00000539417 NPHP4O75161 1426 aaPredicted RBP23.36■■□□□ 1.33
RPAIN-206ENST00000539417 ZFYVE9O95405 1425 aa23.36■■□□□ 1.33
RPAIN-206ENST00000539417 NUTM2DQ5VT03 806 aaPredicted RBP23.34■■□□□ 1.33
RPAIN-206ENST00000539417 SENP3Q9H4L4 574 aaPredicted RBP23.34■■□□□ 1.33
RPAIN-206ENST00000539417 IQGAP1P46940 1657 aa23.34■■□□□ 1.33
RPAIN-206ENST00000539417 RIMS2Q9UQ26 1411 aa23.33■■□□□ 1.33
RPAIN-206ENST00000539417 ACIN1Q9UKV3 1341 aaKnown RBP23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms