RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 GZF1Q9H116 711 aaPredicted RBP15.8■□□□□ 0.12
USP3-203ENST00000538686 SKAP1Q86WV1 359 aa15.79■□□□□ 0.12
USP3-203ENST00000538686 KIF15Q9NS87 1388 aa15.79■□□□□ 0.12
USP3-203ENST00000538686 ZSCAN20P17040 1043 aaPredicted RBP15.79■□□□□ 0.12
USP3-203ENST00000538686 KIF27Q86VH2 1401 aa15.78■□□□□ 0.12
USP3-203ENST00000538686 MYBBP1AQ9BQG0 1328 aaKnown RBP15.78■□□□□ 0.12
USP3-203ENST00000538686 RALBP1Q15311 655 aa15.78■□□□□ 0.12
USP3-203ENST00000538686 CSPP1Q1MSJ5 1256 aa15.78■□□□□ 0.12
USP3-203ENST00000538686 UPF2Q9HAU5 1272 aaKnown RBP15.78■□□□□ 0.12
USP3-203ENST00000538686 CHMP5Q9NZZ3 219 aa15.78■□□□□ 0.12
USP3-203ENST00000538686 SCAPERQ9BY12 1400 aa15.77■□□□□ 0.12
USP3-203ENST00000538686 CUX1P39880 1505 aa15.77■□□□□ 0.11
USP3-203ENST00000538686 ZMYM3Q14202 1370 aa15.76■□□□□ 0.11
USP3-203ENST00000538686 MAPK8IP3Q9UPT6 1336 aa15.76■□□□□ 0.11
USP3-203ENST00000538686 UQCRHLA0A096LP55 91 aa15.75■□□□□ 0.11
USP3-203ENST00000538686 VGFO15240 615 aaPredicted RBP15.75■□□□□ 0.11
USP3-203ENST00000538686 UQCRHP07919 91 aa15.75■□□□□ 0.11
USP3-203ENST00000538686 TMEM51Q9NW97 253 aa15.75■□□□□ 0.11
USP3-203ENST00000538686 AQRO60306 1485 aaKnown RBP eCLIP15.75■□□□□ 0.115e-8■■■□□ 17.4
USP3-203ENST00000538686 SKOR2Q2VWA4 1001 aaPredicted RBP15.75■□□□□ 0.11
USP3-203ENST00000538686 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.75■□□□□ 0.11
USP3-203ENST00000538686 NLRP1Q9C000 1473 aa15.74■□□□□ 0.11
USP3-203ENST00000538686 L3MBTL2Q969R5 705 aa15.74■□□□□ 0.11
USP3-203ENST00000538686 ZNF500O60304 480 aaPredicted RBP15.74■□□□□ 0.11
USP3-203ENST00000538686 R3HCC1Q9Y3T6 440 aaKnown RBP15.73■□□□□ 0.11
USP3-203ENST00000538686 GCC2Q8IWJ2 1684 aa15.72■□□□□ 0.11
USP3-203ENST00000538686 PLIN1O60240 522 aa15.72■□□□□ 0.11
USP3-203ENST00000538686 FTSJ3Q8IY81 847 aaKnown RBP15.72■□□□□ 0.11
USP3-203ENST00000538686 FYCO1Q9BQS8 1478 aa15.72■□□□□ 0.11
USP3-203ENST00000538686 EIF3AQ14152 1382 aaKnown RBP15.72■□□□□ 0.11
USP3-203ENST00000538686 PCF11O94913 1555 aaKnown RBP15.72■□□□□ 0.11
USP3-203ENST00000538686 TBC1D2Q9BYX2 928 aa15.71■□□□□ 0.1
USP3-203ENST00000538686 PRDM10Q9NQV6 1147 aa15.71■□□□□ 0.1
USP3-203ENST00000538686 CTTNBP2Q8WZ74 1663 aa15.7■□□□□ 0.1
USP3-203ENST00000538686 RPRD2Q5VT52 1461 aaKnown RBP15.7■□□□□ 0.1
USP3-203ENST00000538686 TEX14Q8IWB6 1497 aa15.7■□□□□ 0.1
USP3-203ENST00000538686 MCM5P33992 734 aa15.7■□□□□ 0.1
USP3-203ENST00000538686 SASS6Q6UVJ0 657 aa15.69■□□□□ 0.1
USP3-203ENST00000538686 PTPRKQ15262 1439 aa15.69■□□□□ 0.1
USP3-203ENST00000538686 PAXIP1Q6ZW49 1069 aaPredicted RBP15.68■□□□□ 0.1
USP3-203ENST00000538686 TBC1D32Q96NH3 1257 aa15.68■□□□□ 0.1
USP3-203ENST00000538686 IBTKQ9P2D0 1353 aaPredicted RBP15.68■□□□□ 0.1
USP3-203ENST00000538686 CDK11BP21127 795 aaKnown RBP15.67■□□□□ 0.1
USP3-203ENST00000538686 DENND4BO75064 1496 aaPredicted RBP15.67■□□□□ 0.1
USP3-203ENST00000538686 NOL7Q9UMY1 257 aaKnown RBP15.67■□□□□ 0.1
USP3-203ENST00000538686 BLMP54132 1417 aaPredicted RBP15.66■□□□□ 0.1
USP3-203ENST00000538686 NASPP49321 788 aaPredicted RBP15.66■□□□□ 0.1
USP3-203ENST00000538686 NLRP13Q86W25 1043 aa15.66■□□□□ 0.1
USP3-203ENST00000538686 NBPF8Q3BBV2 869 aa15.64■□□□□ 0.09
USP3-203ENST00000538686 GBP4Q96PP9 640 aa15.64■□□□□ 0.09
USP3-203ENST00000538686 BCORL1Q5H9F3 1711 aa15.64■□□□□ 0.09
USP3-203ENST00000538686 THOC2Q8NI27 1593 aaKnown RBP15.64■□□□□ 0.09
USP3-203ENST00000538686 CDCA7LQ96GN5 454 aa15.63■□□□□ 0.09
USP3-203ENST00000538686 C20orf194Q5TEA3 1177 aa15.63■□□□□ 0.09
USP3-203ENST00000538686 TEX2Q8IWB9 1127 aa15.63■□□□□ 0.09
USP3-203ENST00000538686 CASKIN1Q8WXD9 1431 aa15.62■□□□□ 0.09
USP3-203ENST00000538686 SLC20A2Q08357 652 aa15.62■□□□□ 0.09
USP3-203ENST00000538686 CIZ1Q9ULV3 898 aaPredicted RBP15.62■□□□□ 0.09
USP3-203ENST00000538686 ZNF830Q96NB3 372 aaPredicted RBP15.61■□□□□ 0.09
USP3-203ENST00000538686 USP47Q96K76 1375 aa15.61■□□□□ 0.09
USP3-203ENST00000538686 GAS2L3Q86XJ1 694 aa15.61■□□□□ 0.09
USP3-203ENST00000538686 SENP3-EIF4A1A0A087X0R7 540 aa15.6■□□□□ 0.09
USP3-203ENST00000538686 E9PCH4 1651 aa15.59■□□□□ 0.09
USP3-203ENST00000538686 KDM5CP41229 1560 aa15.59■□□□□ 0.09
USP3-203ENST00000538686 SEC24BO95487 1268 aa15.58■□□□□ 0.09
USP3-203ENST00000538686 DNTTIP2Q5QJE6 756 aaKnown RBP15.58■□□□□ 0.09
USP3-203ENST00000538686 MPHOSPH9Q99550 1183 aa15.58■□□□□ 0.09
USP3-203ENST00000538686 KIF14Q15058 1648 aa15.58■□□□□ 0.08
USP3-203ENST00000538686 ZKSCAN5Q9Y2L8 839 aa15.58■□□□□ 0.08
USP3-203ENST00000538686 PARD3Q8TEW0 1356 aa15.57■□□□□ 0.08
USP3-203ENST00000538686 ANKRD30BQ9BXX2 1392 aa15.57■□□□□ 0.08
USP3-203ENST00000538686 CHRM1P11229 460 aaPredicted RBP15.57■□□□□ 0.08
USP3-203ENST00000538686 RBM25P49756 843 aaKnown RBP15.57■□□□□ 0.08
USP3-203ENST00000538686 KLHL34Q8N239 644 aa15.57■□□□□ 0.08
USP3-203ENST00000538686 NCOA3Q9Y6Q9 1424 aa15.57■□□□□ 0.08
USP3-203ENST00000538686 EFCAB5A4FU69 1503 aa15.57■□□□□ 0.08
USP3-203ENST00000538686 BRD2P25440 801 aaKnown RBP15.56■□□□□ 0.08
USP3-203ENST00000538686 HMGN5P82970 282 aaKnown RBP15.56■□□□□ 0.08
USP3-203ENST00000538686 MYRIPQ8NFW9 859 aa15.56■□□□□ 0.08
USP3-203ENST00000538686 PRIMPOLQ96LW4 560 aa15.56■□□□□ 0.08
USP3-203ENST00000538686 HSCBQ8IWL3 235 aa15.55■□□□□ 0.08
USP3-203ENST00000538686 PDLIM2Q96JY6 352 aa15.55■□□□□ 0.08
USP3-203ENST00000538686 NINLQ9Y2I6 1382 aa15.55■□□□□ 0.08
USP3-203ENST00000538686 DNAJC2Q99543 621 aaKnown RBP15.55■□□□□ 0.08
USP3-203ENST00000538686 MBD5Q9P267 1494 aa15.54■□□□□ 0.08
USP3-203ENST00000538686 ARID3AQ99856 593 aa15.54■□□□□ 0.08
USP3-203ENST00000538686 GOLGA6L22H0YM25 854 aa15.53■□□□□ 0.08
USP3-203ENST00000538686 GTF2F1P35269 517 aaKnown RBP eCLIP15.53■□□□□ 0.08
USP3-203ENST00000538686 POLR3GLQ9BT43 218 aa15.53■□□□□ 0.08
USP3-203ENST00000538686 ZNF692Q9BU19 519 aaPredicted RBP15.53■□□□□ 0.08
USP3-203ENST00000538686 FGD5Q6ZNL6 1462 aa15.53■□□□□ 0.08
USP3-203ENST00000538686 XPCQ01831 940 aaPredicted RBP15.53■□□□□ 0.08
USP3-203ENST00000538686 CCDC39Q9UFE4 941 aa15.53■□□□□ 0.08
USP3-203ENST00000538686 CGNL1Q0VF96 1302 aa15.53■□□□□ 0.08
USP3-203ENST00000538686 DDIT3P35638 169 aa15.52■□□□□ 0.08
USP3-203ENST00000538686 NBPF1Q3BBV0 1214 aa15.52■□□□□ 0.08
USP3-203ENST00000538686 VGLL3A8MV65 326 aa15.52■□□□□ 0.07
USP3-203ENST00000538686 IRX3P78415 501 aaPredicted RBP15.52■□□□□ 0.07
USP3-203ENST00000538686 NCBP3Q53F19 620 aaKnown RBP15.52■□□□□ 0.07
USP3-203ENST00000538686 HSP90AB1P08238 724 aaKnown RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms