RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 KCNH8Q96L42 1107 aa9.74□□□□□ -0.85
USP28-207ENST00000538475 AXIN2Q9Y2T1 843 aa9.74□□□□□ -0.85
USP28-207ENST00000538475 ANKRD13DQ6ZTN6 518 aa9.73□□□□□ -0.85
USP28-207ENST00000538475 JPH4Q96JJ6 628 aa9.73□□□□□ -0.85
USP28-207ENST00000538475 TNIKQ9UKE5 1360 aa9.73□□□□□ -0.85
USP28-207ENST00000538475 ARHGAP33O14559 1287 aa9.72□□□□□ -0.85
USP28-207ENST00000538475 FOSBP53539 338 aa9.72□□□□□ -0.85
USP28-207ENST00000538475 MYT1LQ9UL68 1186 aa9.71□□□□□ -0.86
USP28-207ENST00000538475 SPDYE16A6NNV3 312 aaPredicted RBP9.7□□□□□ -0.86
USP28-207ENST00000538475 ZDHHC16Q969W1 377 aa9.7□□□□□ -0.86
USP28-207ENST00000538475 LSM11P83369 360 aaKnown RBP eCLIP9.69□□□□□ -0.866e-18■■■■■ 77.1
USP28-207ENST00000538475 KCNK17Q96T54 332 aa9.69□□□□□ -0.86
USP28-207ENST00000538475 BAZ1AQ9NRL2 1556 aaPredicted RBP9.69□□□□□ -0.86
USP28-207ENST00000538475 PHF14O94880 888 aa9.68□□□□□ -0.86
USP28-207ENST00000538475 PSEN2P49810 448 aa9.68□□□□□ -0.86
USP28-207ENST00000538475 PDIA6Q15084 440 aa9.68□□□□□ -0.86
USP28-207ENST00000538475 POTEEQ6S8J3 1075 aa9.68□□□□□ -0.86
USP28-207ENST00000538475 DDX12PQ92771 950 aa9.68□□□□□ -0.86
USP28-207ENST00000538475 SUPT16HQ9Y5B9 1047 aaKnown RBP9.68□□□□□ -0.86
USP28-207ENST00000538475 ARIH1Q9Y4X5 557 aaPredicted RBP9.67□□□□□ -0.86
USP28-207ENST00000538475 PCDHGA10Q9Y5H3 936 aa9.67□□□□□ -0.86
USP28-207ENST00000538475 CEP162Q5TB80 1403 aa9.66□□□□□ -0.86
USP28-207ENST00000538475 PTPREP23469 700 aa9.66□□□□□ -0.86
USP28-207ENST00000538475 TYW1BQ6NUM6 668 aa9.66□□□□□ -0.86
USP28-207ENST00000538475 P3H3Q8IVL6 736 aa9.66□□□□□ -0.86
USP28-207ENST00000538475 FBXW7Q969H0 707 aa9.66□□□□□ -0.86
USP28-207ENST00000538475 BCL2L12Q9HB09 334 aa9.66□□□□□ -0.86
USP28-207ENST00000538475 ERICH6Q7L0X2 663 aa9.65□□□□□ -0.86
USP28-207ENST00000538475 KCNV2Q8TDN2 545 aa9.65□□□□□ -0.86
USP28-207ENST00000538475 EPAS1Q99814 870 aa9.65□□□□□ -0.86
USP28-207ENST00000538475 ADAM33Q9BZ11 813 aa9.65□□□□□ -0.86
USP28-207ENST00000538475 PTGER2P43116 358 aa9.64□□□□□ -0.87
USP28-207ENST00000538475 FAM9AQ8IZU1 332 aaPredicted RBP9.64□□□□□ -0.87
USP28-207ENST00000538475 ARHGEF1Q92888 912 aaKnown RBP9.64□□□□□ -0.87
USP28-207ENST00000538475 RNF166Q96A37 237 aaPredicted RBP9.64□□□□□ -0.87
USP28-207ENST00000538475 GRXCR2A6NFK2 248 aa9.63□□□□□ -0.87
USP28-207ENST00000538475 DMRTA1Q5VZB9 504 aa9.63□□□□□ -0.87
USP28-207ENST00000538475 NBR1Q14596 966 aa9.62□□□□□ -0.87
USP28-207ENST00000538475 RBM33Q96EV2 1170 aaKnown RBP9.62□□□□□ -0.87
USP28-207ENST00000538475 SCRIBQ14160 1630 aa9.62□□□□□ -0.87
USP28-207ENST00000538475 ADGRD1Q6QNK2 874 aa9.61□□□□□ -0.87
USP28-207ENST00000538475 YTHDC1Q96MU7 727 aaKnown RBP9.61□□□□□ -0.87
USP28-207ENST00000538475 STAC3Q96MF2 364 aa9.6□□□□□ -0.87
USP28-207ENST00000538475 TK2O00142 265 aa9.59□□□□□ -0.87
USP28-207ENST00000538475 VSIG10Q8N0Z9 540 aa9.59□□□□□ -0.87
USP28-207ENST00000538475 NACADO15069 1562 aa9.58□□□□□ -0.88
USP28-207ENST00000538475 KIF21BO75037 1637 aa9.58□□□□□ -0.88
USP28-207ENST00000538475 MAP3K7O43318 606 aa9.58□□□□□ -0.88
USP28-207ENST00000538475 KDM2AQ9Y2K7 1162 aa9.58□□□□□ -0.88
USP28-207ENST00000538475 GOLGA3Q08378 1498 aa9.58□□□□□ -0.88
USP28-207ENST00000538475 C6orf132Q5T0Z8 1188 aa9.57□□□□□ -0.88
USP28-207ENST00000538475 WIZO95785 1651 aa9.56□□□□□ -0.88
USP28-207ENST00000538475 PPP1R3GB7ZBB8 358 aa9.56□□□□□ -0.88
USP28-207ENST00000538475 EN1Q05925 392 aaPredicted RBP9.55□□□□□ -0.88
USP28-207ENST00000538475 VPS9D1Q9Y2B5 631 aa9.55□□□□□ -0.88
USP28-207ENST00000538475 MROH2BQ7Z745 1585 aa9.54□□□□□ -0.88
USP28-207ENST00000538475 BAZ1BQ9UIG0 1483 aaKnown RBP9.54□□□□□ -0.88
USP28-207ENST00000538475 ZBED2Q9BTP6 218 aa9.54□□□□□ -0.88
USP28-207ENST00000538475 TOP2AP11388 1531 aaKnown RBP9.53□□□□□ -0.88
USP28-207ENST00000538475 COL9A1P20849 921 aa9.53□□□□□ -0.88
USP28-207ENST00000538475 SLC4A5Q9BY07 1137 aa9.53□□□□□ -0.88
USP28-207ENST00000538475 TSR1Q2NL82 804 aaKnown RBP9.52□□□□□ -0.89
USP28-207ENST00000538475 HRO43593 1189 aa9.51□□□□□ -0.89
USP28-207ENST00000538475 OSBPP22059 807 aa9.51□□□□□ -0.89
USP28-207ENST00000538475 MLLT3P42568 568 aaPredicted RBP9.5□□□□□ -0.89
USP28-207ENST00000538475 CEP164Q9UPV0 1460 aa9.5□□□□□ -0.89
USP28-207ENST00000538475 FANCIQ9NVI1 1328 aa9.5□□□□□ -0.89
USP28-207ENST00000538475 CUX2O14529 1486 aa9.49□□□□□ -0.89
USP28-207ENST00000538475 SEMA3EO15041 775 aa9.49□□□□□ -0.89
USP28-207ENST00000538475 PROX2Q3B8N5 592 aa9.49□□□□□ -0.89
USP28-207ENST00000538475 VPS8Q8N3P4 1428 aa9.48□□□□□ -0.89
USP28-207ENST00000538475 GOLGA8CPA6NN73 597 aa9.48□□□□□ -0.89
USP28-207ENST00000538475 MRPL50Q8N5N7 158 aaKnown RBP9.48□□□□□ -0.89
USP28-207ENST00000538475 NBPF3Q9H094 633 aa9.48□□□□□ -0.89
USP28-207ENST00000538475 PRIM1P49642 420 aaKnown RBP9.47□□□□□ -0.89
USP28-207ENST00000538475 NEFLP07196 543 aa9.46□□□□□ -0.9
USP28-207ENST00000538475 ERICH6BQ5W0A0 696 aa9.46□□□□□ -0.9
USP28-207ENST00000538475 CERKQ8TCT0 537 aa9.46□□□□□ -0.9
USP28-207ENST00000538475 RABGEF1Q9UJ41 708 aa9.46□□□□□ -0.9
USP28-207ENST00000538475 SMYD5Q6GMV2 418 aa9.45□□□□□ -0.9
USP28-207ENST00000538475 KIAA1468Q9P260 1216 aa9.45□□□□□ -0.9
USP28-207ENST00000538475 RBM19Q9Y4C8 960 aaKnown RBP9.45□□□□□ -0.9
USP28-207ENST00000538475 SMARCA2P51531 1590 aa9.45□□□□□ -0.9
USP28-207ENST00000538475 TRIM6-TRIM34B2RNG4 842 aa9.44□□□□□ -0.9
USP28-207ENST00000538475 BHMG1C9JSJ3 638 aaPredicted RBP9.44□□□□□ -0.9
USP28-207ENST00000538475 KCTD12Q96CX2 325 aaKnown RBP9.44□□□□□ -0.9
USP28-207ENST00000538475 CDHR5Q9HBB8 845 aa9.44□□□□□ -0.9
USP28-207ENST00000538475 CCDC88BA6NC98 1476 aa9.44□□□□□ -0.9
USP28-207ENST00000538475 CECR2Q9BXF3 1484 aa9.44□□□□□ -0.9
USP28-207ENST00000538475 ABCC8Q09428 1581 aa9.43□□□□□ -0.9
USP28-207ENST00000538475 DHX57Q6P158 1386 aaKnown RBP9.43□□□□□ -0.9
USP28-207ENST00000538475 ONECUT3O60422 494 aaPredicted RBP9.43□□□□□ -0.9
USP28-207ENST00000538475 PACS2Q86VP3 889 aa9.43□□□□□ -0.9
USP28-207ENST00000538475 PRSS12P56730 875 aa9.42□□□□□ -0.9
USP28-207ENST00000538475 CDCA7LQ96GN5 454 aa9.42□□□□□ -0.9
USP28-207ENST00000538475 NUTM2FA1L443 756 aa9.41□□□□□ -0.9
USP28-207ENST00000538475 CCER2I3L3R5 266 aa9.41□□□□□ -0.9
USP28-207ENST00000538475 PRKCSHP14314 528 aaPredicted RBP9.41□□□□□ -0.9
USP28-207ENST00000538475 CLIP1P30622 1438 aa9.4□□□□□ -0.9
USP28-207ENST00000538475 TESPA1A2RU30 521 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms