RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SHANK2Q9UPX8 1470 aa17.97■□□□□ 0.47
CLIP1-208ENST00000537004 UHRF1BP1Q6BDS2 1440 aa17.96■□□□□ 0.47
CLIP1-208ENST00000537004 ZEB1P37275 1124 aaPredicted RBP17.96■□□□□ 0.47
CLIP1-208ENST00000537004 FBXO31Q5XUX0 539 aaPredicted RBP17.95■□□□□ 0.46
CLIP1-208ENST00000537004 CROCC2H7BZ55 1655 aa17.93■□□□□ 0.46
CLIP1-208ENST00000537004 PTPRKQ15262 1439 aa17.93■□□□□ 0.46
CLIP1-208ENST00000537004 NCOA1Q15788 1441 aa17.93■□□□□ 0.46
CLIP1-208ENST00000537004 ITGAEP38570 1179 aa17.93■□□□□ 0.46
CLIP1-208ENST00000537004 DUOX2Q9NRD8 1548 aa17.92■□□□□ 0.46
CLIP1-208ENST00000537004 ANKRD30AQ9BXX3 1397 aa17.92■□□□□ 0.46
CLIP1-208ENST00000537004 MROH2AA6NES4 1674 aa17.92■□□□□ 0.46
CLIP1-208ENST00000537004 PREX1Q8TCU6 1659 aa17.92■□□□□ 0.46
CLIP1-208ENST00000537004 SETD1BQ9UPS6 1966 aaKnown RBP17.91■□□□□ 0.46
CLIP1-208ENST00000537004 NPATQ14207 1427 aa17.91■□□□□ 0.46
CLIP1-208ENST00000537004 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.91■□□□□ 0.461e-6■□□□□ 10.5
CLIP1-208ENST00000537004 KDM5DQ9BY66 1539 aa17.9■□□□□ 0.46
CLIP1-208ENST00000537004 ERBINQ96RT1 1412 aa17.88■□□□□ 0.45
CLIP1-208ENST00000537004 MROH1Q8NDA8 1641 aa17.87■□□□□ 0.45
CLIP1-208ENST00000537004 RNF17Q9BXT8 1623 aaKnown RBP17.87■□□□□ 0.45
CLIP1-208ENST00000537004 ABCC3O15438 1527 aa17.86■□□□□ 0.45
CLIP1-208ENST00000537004 EIF2AK4Q9P2K8 1649 aaKnown RBP17.85■□□□□ 0.45
CLIP1-208ENST00000537004 ADGRL2O95490 1459 aa17.85■□□□□ 0.45
CLIP1-208ENST00000537004 PZPP20742 1482 aa17.85■□□□□ 0.45
CLIP1-208ENST00000537004 TNRQ92752 1358 aa17.84■□□□□ 0.45
CLIP1-208ENST00000537004 CCER1Q8TC90 406 aaPredicted RBP17.83■□□□□ 0.45
CLIP1-208ENST00000537004 FAM135AQ9P2D6 1515 aa17.82■□□□□ 0.44
CLIP1-208ENST00000537004 RRBP1Q9P2E9 1410 aaKnown RBP17.82■□□□□ 0.44
CLIP1-208ENST00000537004 ANKRD50Q9ULJ7 1429 aa17.82■□□□□ 0.44
CLIP1-208ENST00000537004 MYO3AQ8NEV4 1616 aa17.81■□□□□ 0.44
CLIP1-208ENST00000537004 PRDM15P57071 1507 aaPredicted RBP17.8■□□□□ 0.44
CLIP1-208ENST00000537004 NCKAP5LQ9HCH0 1330 aa17.79■□□□□ 0.44
CLIP1-208ENST00000537004 STRCQ7RTU9 1775 aa17.79■□□□□ 0.44
CLIP1-208ENST00000537004 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.79■□□□□ 0.44
CLIP1-208ENST00000537004 CEP170BQ9Y4F5 1589 aaPredicted RBP17.79■□□□□ 0.44
CLIP1-208ENST00000537004 CAMSAP1Q5T5Y3 1602 aa17.78■□□□□ 0.44
CLIP1-208ENST00000537004 CEP152O94986 1710 aa17.78■□□□□ 0.44
CLIP1-208ENST00000537004 KANK1Q14678 1352 aa17.77■□□□□ 0.44
CLIP1-208ENST00000537004 ROCK1Q13464 1354 aa17.77■□□□□ 0.43
CLIP1-208ENST00000537004 A2ML1A8K2U0 1454 aa17.76■□□□□ 0.43
CLIP1-208ENST00000537004 DEPDC5O75140 1603 aa17.76■□□□□ 0.43
CLIP1-208ENST00000537004 ERVK-7P63135 1459 aa17.75■□□□□ 0.43
CLIP1-208ENST00000537004 ZC3H13Q5T200 1668 aaKnown RBP17.75■□□□□ 0.43
CLIP1-208ENST00000537004 DMRT2Q9Y5R5 561 aa17.75■□□□□ 0.43
CLIP1-208ENST00000537004 ILDR1Q86SU0 546 aaPredicted RBP17.74■□□□□ 0.43
CLIP1-208ENST00000537004 ZNF142P52746 1687 aaPredicted RBP17.73■□□□□ 0.43
CLIP1-208ENST00000537004 CFAP65Q6ZU64 1925 aaKnown RBP17.73■□□□□ 0.43
CLIP1-208ENST00000537004 SPATA31D1Q6ZQQ2 1576 aa17.73■□□□□ 0.43
CLIP1-208ENST00000537004 ARHGAP31Q2M1Z3 1444 aa17.72■□□□□ 0.43
CLIP1-208ENST00000537004 VWDEQ8N2E2 1590 aa17.72■□□□□ 0.43
CLIP1-208ENST00000537004 NLRP1Q9C000 1473 aa17.71■□□□□ 0.43
CLIP1-208ENST00000537004 PTPRTO14522 1441 aa17.69■□□□□ 0.42
CLIP1-208ENST00000537004 PLA2R1Q13018 1463 aa17.69■□□□□ 0.42
CLIP1-208ENST00000537004 LMTK2Q8IWU2 1503 aa17.69■□□□□ 0.42
CLIP1-208ENST00000537004 THEMISQ8N1K5 641 aaPredicted RBP17.69■□□□□ 0.42
CLIP1-208ENST00000537004 UGGT1Q9NYU2 1555 aa17.69■□□□□ 0.42
CLIP1-208ENST00000537004 PKD2Q13563 968 aa17.69■□□□□ 0.42
CLIP1-208ENST00000537004 NUP155O75694 1391 aa17.66■□□□□ 0.42
CLIP1-208ENST00000537004 IDI1Q13907 227 aa17.66■□□□□ 0.42
CLIP1-208ENST00000537004 EFCAB6Q5THR3 1501 aa17.66■□□□□ 0.42
CLIP1-208ENST00000537004 CERKQ8TCT0 537 aa17.65■□□□□ 0.42
CLIP1-208ENST00000537004 ANKLE2Q86XL3 938 aa17.65■□□□□ 0.42
CLIP1-208ENST00000537004 ZNF335Q9H4Z2 1342 aaPredicted RBP17.64■□□□□ 0.41
CLIP1-208ENST00000537004 NAIPQ13075 1403 aa17.64■□□□□ 0.41
CLIP1-208ENST00000537004 UNC13BO14795 1591 aa17.63■□□□□ 0.41
CLIP1-208ENST00000537004 NOS1P29475 1434 aa17.62■□□□□ 0.41
CLIP1-208ENST00000537004 STAG3Q9UJ98 1225 aa17.62■□□□□ 0.41
CLIP1-208ENST00000537004 SYNMO15061 1565 aa17.61■□□□□ 0.41
CLIP1-208ENST00000537004 LTKP29376 864 aa17.6■□□□□ 0.41
CLIP1-208ENST00000537004 FBXO41Q8TF61 875 aa17.6■□□□□ 0.41
CLIP1-208ENST00000537004 NEURL4Q96JN8 1562 aa17.6■□□□□ 0.41
CLIP1-208ENST00000537004 HFM1A2PYH4 1435 aa17.58■□□□□ 0.4
CLIP1-208ENST00000537004 TET3O43151 1660 aa17.57■□□□□ 0.4
CLIP1-208ENST00000537004 RPRD2Q5VT52 1461 aaKnown RBP17.57■□□□□ 0.4
CLIP1-208ENST00000537004 TXNDC2Q86VQ3 553 aa17.57■□□□□ 0.4
CLIP1-208ENST00000537004 SLC52A1Q9NWF4 448 aa17.57■□□□□ 0.4
CLIP1-208ENST00000537004 UBR1Q8IWV7 1749 aa17.57■□□□□ 0.4
CLIP1-208ENST00000537004 PIK3C2BO00750 1634 aa17.57■□□□□ 0.4
CLIP1-208ENST00000537004 LTBP4Q8N2S1 1624 aa17.57■□□□□ 0.4
CLIP1-208ENST00000537004 NPHP4O75161 1426 aaPredicted RBP17.56■□□□□ 0.4
CLIP1-208ENST00000537004 IQGAP3Q86VI3 1631 aa17.56■□□□□ 0.4
CLIP1-208ENST00000537004 SENP3Q9H4L4 574 aaPredicted RBP17.55■□□□□ 0.4
CLIP1-208ENST00000537004 TMEM2Q9UHN6 1383 aa17.55■□□□□ 0.4
CLIP1-208ENST00000537004 TRIM52Q96A61 297 aa17.55■□□□□ 0.4
CLIP1-208ENST00000537004 E9PCH4 1651 aa17.54■□□□□ 0.4
CLIP1-208ENST00000537004 MED14O60244 1454 aa17.54■□□□□ 0.4
CLIP1-208ENST00000537004 POLR1AO95602 1720 aaPredicted RBP17.54■□□□□ 0.4
CLIP1-208ENST00000537004 CHGAP10645 457 aaKnown RBP17.54■□□□□ 0.4
CLIP1-208ENST00000537004 SCAF11Q99590 1463 aaKnown RBP17.53■□□□□ 0.4
CLIP1-208ENST00000537004 ARHGAP23Q9P227 1491 aa17.53■□□□□ 0.4
CLIP1-208ENST00000537004 EID1Q9Y6B2 187 aa17.52■□□□□ 0.4
CLIP1-208ENST00000537004 SLIT1O75093 1534 aa17.52■□□□□ 0.4
CLIP1-208ENST00000537004 GCC2Q8IWJ2 1684 aa17.52■□□□□ 0.39
CLIP1-208ENST00000537004 DHX57Q6P158 1386 aaKnown RBP17.5■□□□□ 0.39
CLIP1-208ENST00000537004 NUTM2DQ5VT03 806 aaPredicted RBP17.49■□□□□ 0.39
CLIP1-208ENST00000537004 ADGRB3O60242 1522 aa17.49■□□□□ 0.39
CLIP1-208ENST00000537004 IQGAP1P46940 1657 aa17.47■□□□□ 0.39
CLIP1-208ENST00000537004 SLC4A1APQ9BWU0 796 aaKnown RBP17.47■□□□□ 0.39
CLIP1-208ENST00000537004 FOXD1Q16676 465 aa17.47■□□□□ 0.39
CLIP1-208ENST00000537004 SLC26A8Q96RN1 970 aa17.47■□□□□ 0.39
CLIP1-208ENST00000537004 SETD5Q9C0A6 1442 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms