RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 MROH1Q8NDA8 1641 aa20.58■□□□□ 0.89
CD44-224ENST00000526669 KIF3BO15066 747 aa20.58■□□□□ 0.89
CD44-224ENST00000526669 MLECQ14165 292 aa20.58■□□□□ 0.89
CD44-224ENST00000526669 SETD5Q9C0A6 1442 aa20.58■□□□□ 0.88
CD44-224ENST00000526669 UNC13BO14795 1591 aa20.57■□□□□ 0.88
CD44-224ENST00000526669 CLTCQ00610 1675 aaKnown RBP20.55■□□□□ 0.88
CD44-224ENST00000526669 RAB3GAP2Q9H2M9 1393 aa20.54■□□□□ 0.88
CD44-224ENST00000526669 GGT6Q6P531 493 aa20.53■□□□□ 0.88
CD44-224ENST00000526669 RIMS1Q86UR5 1692 aaKnown RBP20.53■□□□□ 0.88
CD44-224ENST00000526669 MADDQ8WXG6 1647 aa20.53■□□□□ 0.88
CD44-224ENST00000526669 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.52■□□□□ 0.88
CD44-224ENST00000526669 PRDM15P57071 1507 aaPredicted RBP20.52■□□□□ 0.87
CD44-224ENST00000526669 ADAMTSL3P82987 1691 aa20.51■□□□□ 0.87
CD44-224ENST00000526669 IQGAP3Q86VI3 1631 aa20.49■□□□□ 0.87
CD44-224ENST00000526669 ZC3H13Q5T200 1668 aaKnown RBP20.49■□□□□ 0.87
CD44-224ENST00000526669 CAMSAP1Q5T5Y3 1602 aa20.47■□□□□ 0.87
CD44-224ENST00000526669 TRIM52Q96A61 297 aa20.46■□□□□ 0.87
CD44-224ENST00000526669 VWDEQ8N2E2 1590 aa20.46■□□□□ 0.87
CD44-224ENST00000526669 ABCC3O15438 1527 aa20.45■□□□□ 0.86
CD44-224ENST00000526669 KDM5DQ9BY66 1539 aa20.45■□□□□ 0.86
CD44-224ENST00000526669 TET3O43151 1660 aa20.45■□□□□ 0.86
CD44-224ENST00000526669 MROH2AA6NES4 1674 aa20.44■□□□□ 0.86
CD44-224ENST00000526669 C3P01024 1663 aa20.43■□□□□ 0.86
CD44-224ENST00000526669 NUP155O75694 1391 aa20.43■□□□□ 0.86
CD44-224ENST00000526669 KANK1Q14678 1352 aa20.43■□□□□ 0.86
CD44-224ENST00000526669 FAM135AQ9P2D6 1515 aa20.43■□□□□ 0.86
CD44-224ENST00000526669 E9PCH4 1651 aa20.42■□□□□ 0.86
CD44-224ENST00000526669 PZPP20742 1482 aa20.4■□□□□ 0.86
CD44-224ENST00000526669 WASHC2CQ9Y4E1 1318 aa20.39■□□□□ 0.85
CD44-224ENST00000526669 ESF1Q9H501 851 aaKnown RBP20.39■□□□□ 0.85
CD44-224ENST00000526669 EFCAB6Q5THR3 1501 aa20.37■□□□□ 0.85
CD44-224ENST00000526669 LMTK2Q8IWU2 1503 aa20.37■□□□□ 0.85
CD44-224ENST00000526669 PLPPR3Q6T4P5 718 aa20.36■□□□□ 0.85
CD44-224ENST00000526669 PREX1Q8TCU6 1659 aa20.35■□□□□ 0.85
CD44-224ENST00000526669 SPHKAPQ2M3C7 1700 aa20.34■□□□□ 0.85
CD44-224ENST00000526669 CNTLNQ9NXG0 1405 aa20.34■□□□□ 0.85
CD44-224ENST00000526669 KDM4FA0A1W2PPD8 638 aa20.33■□□□□ 0.85
CD44-224ENST00000526669 HRCP23327 699 aa20.33■□□□□ 0.85
CD44-224ENST00000526669 PPP6R1Q9UPN7 881 aa20.33■□□□□ 0.85
CD44-224ENST00000526669 SLC4A1APQ9BWU0 796 aaKnown RBP20.31■□□□□ 0.84
CD44-224ENST00000526669 CEBPAP49715 358 aaPredicted RBP20.29■□□□□ 0.84
CD44-224ENST00000526669 MPHOSPH9Q99550 1183 aa20.29■□□□□ 0.84
CD44-224ENST00000526669 ZMYM3Q14202 1370 aa20.29■□□□□ 0.84
CD44-224ENST00000526669 PTPRMP28827 1452 aa20.29■□□□□ 0.84
CD44-224ENST00000526669 NPATQ14207 1427 aa20.28■□□□□ 0.84
CD44-224ENST00000526669 SETD1BQ9UPS6 1966 aaKnown RBP20.27■□□□□ 0.84
CD44-224ENST00000526669 PKD2Q13563 968 aa20.27■□□□□ 0.84
CD44-224ENST00000526669 FOXD1Q16676 465 aa20.27■□□□□ 0.84
CD44-224ENST00000526669 ACIN1Q9UKV3 1341 aaKnown RBP20.27■□□□□ 0.83
CD44-224ENST00000526669 MYO5BQ9ULV0 1848 aa20.25■□□□□ 0.83
CD44-224ENST00000526669 ARHGAP31Q2M1Z3 1444 aa20.25■□□□□ 0.83
CD44-224ENST00000526669 ERVK-7P63135 1459 aa20.24■□□□□ 0.83
CD44-224ENST00000526669 FBXO31Q5XUX0 539 aaPredicted RBP20.24■□□□□ 0.83
CD44-224ENST00000526669 SYNMO15061 1565 aa20.24■□□□□ 0.83
CD44-224ENST00000526669 DHX57Q6P158 1386 aaKnown RBP20.23■□□□□ 0.83
CD44-224ENST00000526669 SPATA31D1Q6ZQQ2 1576 aa20.23■□□□□ 0.83
CD44-224ENST00000526669 RPRD2Q5VT52 1461 aaKnown RBP20.23■□□□□ 0.83
CD44-224ENST00000526669 KIF1BO60333 1816 aa20.21■□□□□ 0.83
CD44-224ENST00000526669 UGGT1Q9NYU2 1555 aa20.21■□□□□ 0.83
CD44-224ENST00000526669 MYO3AQ8NEV4 1616 aa20.2■□□□□ 0.82
CD44-224ENST00000526669 CLTCL1P53675 1640 aa20.2■□□□□ 0.82
CD44-224ENST00000526669 NOS1P29475 1434 aa20.18■□□□□ 0.82
CD44-224ENST00000526669 TRPM2O94759 1503 aa20.17■□□□□ 0.82
CD44-224ENST00000526669 PIK3C2BO00750 1634 aa20.16■□□□□ 0.82
CD44-224ENST00000526669 TNRQ92752 1358 aa20.16■□□□□ 0.82
CD44-224ENST00000526669 PLA2R1Q13018 1463 aa20.16■□□□□ 0.82
CD44-224ENST00000526669 PTPRTO14522 1441 aa20.14■□□□□ 0.81
CD44-224ENST00000526669 ZNF142P52746 1687 aaPredicted RBP20.13■□□□□ 0.81
CD44-224ENST00000526669 UBR1Q8IWV7 1749 aa20.12■□□□□ 0.81
CD44-224ENST00000526669 ANKRD30BQ9BXX2 1392 aa20.11■□□□□ 0.81
CD44-224ENST00000526669 CEP170BQ9Y4F5 1589 aaPredicted RBP20.09■□□□□ 0.81
CD44-224ENST00000526669 CCER1Q8TC90 406 aaPredicted RBP20.08■□□□□ 0.81
CD44-224ENST00000526669 TMEM131LA2VDJ0 1609 aa20.07■□□□□ 0.8
CD44-224ENST00000526669 CCDC144AA2RUR9 1427 aa20.07■□□□□ 0.8
CD44-224ENST00000526669 ADGRB3O60242 1522 aa20.07■□□□□ 0.8
CD44-224ENST00000526669 NLRP1Q9C000 1473 aa20.05■□□□□ 0.8
CD44-224ENST00000526669 UHRF1BP1Q6BDS2 1440 aa20.05■□□□□ 0.8
CD44-224ENST00000526669 CHGAP10645 457 aaKnown RBP20.05■□□□□ 0.8
CD44-224ENST00000526669 IDI1Q13907 227 aa20.05■□□□□ 0.8
CD44-224ENST00000526669 A2ML1A8K2U0 1454 aa20.05■□□□□ 0.8
CD44-224ENST00000526669 KDM5AP29375 1690 aaKnown RBP20.04■□□□□ 0.8
CD44-224ENST00000526669 SIN3AQ96ST3 1273 aa20.04■□□□□ 0.8
CD44-224ENST00000526669 SLC52A1Q9NWF4 448 aa20.02■□□□□ 0.8
CD44-224ENST00000526669 IFT172Q9UG01 1749 aa20.02■□□□□ 0.79
CD44-224ENST00000526669 PPLO60437 1756 aa20.01■□□□□ 0.79
CD44-224ENST00000526669 NEUROD1Q13562 356 aa20.01■□□□□ 0.79
CD44-224ENST00000526669 STAG3Q9UJ98 1225 aa20■□□□□ 0.79
CD44-224ENST00000526669 POLR1AO95602 1720 aaPredicted RBP19.98■□□□□ 0.79
CD44-224ENST00000526669 LMTK3Q96Q04 1460 aa19.98■□□□□ 0.79
CD44-224ENST00000526669 AEBP2Q6ZN18 517 aaPredicted RBP19.97■□□□□ 0.79
CD44-224ENST00000526669 RGL3Q3MIN7 710 aa19.95■□□□□ 0.78
CD44-224ENST00000526669 SPATA31E1Q6ZUB1 1445 aa19.94■□□□□ 0.78
CD44-224ENST00000526669 ZNF326Q5BKZ1 582 aaKnown RBP19.94■□□□□ 0.78
CD44-224ENST00000526669 NEXMIFQ5QGS0 1516 aa19.93■□□□□ 0.78
CD44-224ENST00000526669 NEURL4Q96JN8 1562 aa19.93■□□□□ 0.78
CD44-224ENST00000526669 HSPA2P54652 639 aa19.92■□□□□ 0.78
CD44-224ENST00000526669 CLSPNQ9HAW4 1339 aa19.92■□□□□ 0.78
CD44-224ENST00000526669 STRCQ7RTU9 1775 aa19.9■□□□□ 0.78
CD44-224ENST00000526669 NUTM2DQ5VT03 806 aaPredicted RBP19.9■□□□□ 0.78
CD44-224ENST00000526669 RIMS2Q9UQ26 1411 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms