RNA–Protein interactions for RNA: ENST00000524165.5

PVT1-220, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 458 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-220ENST00000524165 DEPDC5O75140 1603 aa28.95■■■□□ 2.23
PVT1-220ENST00000524165 MED14O60244 1454 aa28.95■■■□□ 2.22
PVT1-220ENST00000524165 EHMT2Q96KQ7 1210 aa28.92■■■□□ 2.22
PVT1-220ENST00000524165 RGS17Q9UGC6 210 aaPredicted RBP28.92■■■□□ 2.22
PVT1-220ENST00000524165 RNF17Q9BXT8 1623 aaKnown RBP28.91■■■□□ 2.22
PVT1-220ENST00000524165 NPHP4O75161 1426 aaPredicted RBP28.91■■■□□ 2.22
PVT1-220ENST00000524165 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.9■■■□□ 2.22
PVT1-220ENST00000524165 THEMISQ8N1K5 641 aaPredicted RBP28.9■■■□□ 2.22
PVT1-220ENST00000524165 PZPP20742 1482 aa28.9■■■□□ 2.22
PVT1-220ENST00000524165 STRCP1A6NGW2 1772 aa28.88■■■□□ 2.21
PVT1-220ENST00000524165 FBXO31Q5XUX0 539 aaPredicted RBP28.88■■■□□ 2.21
PVT1-220ENST00000524165 IQGAP1P46940 1657 aa28.88■■■□□ 2.21
PVT1-220ENST00000524165 FAM135AQ9P2D6 1515 aa28.88■■■□□ 2.21
PVT1-220ENST00000524165 SYNMO15061 1565 aa28.88■■■□□ 2.21
PVT1-220ENST00000524165 CFDP1Q9UEE9 299 aaPredicted RBP28.87■■■□□ 2.21
PVT1-220ENST00000524165 LRRC7Q96NW7 1537 aa28.87■■■□□ 2.21
PVT1-220ENST00000524165 NLRP1Q9C000 1473 aa28.85■■■□□ 2.21
PVT1-220ENST00000524165 FYCO1Q9BQS8 1478 aa28.85■■■□□ 2.21
PVT1-220ENST00000524165 UGGT1Q9NYU2 1555 aa28.84■■■□□ 2.21
PVT1-220ENST00000524165 SENP3Q9H4L4 574 aaPredicted RBP28.84■■■□□ 2.21
PVT1-220ENST00000524165 KDM5DQ9BY66 1539 aa28.84■■■□□ 2.21
PVT1-220ENST00000524165 DHX29Q7Z478 1369 aaKnown RBP28.82■■■□□ 2.2
PVT1-220ENST00000524165 RTEL1-TNFRSF6BF6WH68 1400 aa28.81■■■□□ 2.2
PVT1-220ENST00000524165 MIA2Q96PC5 1412 aa28.8■■■□□ 2.2
PVT1-220ENST00000524165 CCNB3Q8WWL7 1395 aa28.79■■■□□ 2.2
PVT1-220ENST00000524165 MBD5Q9P267 1494 aa28.74■■■□□ 2.19
PVT1-220ENST00000524165 KIF3BO15066 747 aa28.73■■■□□ 2.19
PVT1-220ENST00000524165 WASHC2CQ9Y4E1 1318 aa28.72■■■□□ 2.19
PVT1-220ENST00000524165 POTEAQ6S8J7 498 aa28.7■■■□□ 2.18
PVT1-220ENST00000524165 ZC3H13Q5T200 1668 aaKnown RBP28.7■■■□□ 2.18
PVT1-220ENST00000524165 ZNF644Q9H582 1327 aaPredicted RBP28.67■■■□□ 2.18
PVT1-220ENST00000524165 XIRP1Q702N8 1843 aaKnown RBP28.66■■■□□ 2.18
PVT1-220ENST00000524165 TIAM1Q13009 1591 aa28.63■■■□□ 2.17
PVT1-220ENST00000524165 FAM135BQ49AJ0 1406 aa28.62■■■□□ 2.17
PVT1-220ENST00000524165 MTUS2Q5JR59 1369 aa28.6■■■□□ 2.17
PVT1-220ENST00000524165 SETD1AO15047 1707 aaKnown RBP28.57■■■□□ 2.16
PVT1-220ENST00000524165 CCDC141Q6ZP82 1450 aa28.56■■■□□ 2.16
PVT1-220ENST00000524165 UBR1Q8IWV7 1749 aa28.56■■■□□ 2.16
PVT1-220ENST00000524165 SCAF11Q99590 1463 aaKnown RBP28.55■■■□□ 2.16
PVT1-220ENST00000524165 RSPH4AQ5TD94 716 aa28.51■■■□□ 2.15
PVT1-220ENST00000524165 ERVK-7P63135 1459 aa28.51■■■□□ 2.15
PVT1-220ENST00000524165 ABCC3O15438 1527 aa28.5■■■□□ 2.15
PVT1-220ENST00000524165 ROBO1Q9Y6N7 1651 aa28.48■■■□□ 2.15
PVT1-220ENST00000524165 SLIT1O75093 1534 aa28.48■■■□□ 2.15
PVT1-220ENST00000524165 EHBP1L1Q8N3D4 1523 aa28.48■■■□□ 2.15
PVT1-220ENST00000524165 ARHGAP23Q9P227 1491 aa28.47■■■□□ 2.15
PVT1-220ENST00000524165 NCOA2Q15596 1464 aa28.46■■■□□ 2.15
PVT1-220ENST00000524165 CEP162Q5TB80 1403 aa28.45■■■□□ 2.15
PVT1-220ENST00000524165 CFAP65Q6ZU64 1925 aaKnown RBP28.45■■■□□ 2.14
PVT1-220ENST00000524165 LTKP29376 864 aa28.44■■■□□ 2.14
PVT1-220ENST00000524165 CAMSAP2Q08AD1 1489 aa28.43■■■□□ 2.14
PVT1-220ENST00000524165 TXNDC2Q86VQ3 553 aa28.43■■■□□ 2.14
PVT1-220ENST00000524165 ARHGEF5Q12774 1597 aa28.4■■■□□ 2.14
PVT1-220ENST00000524165 LRRC9Q6ZRR7 1453 aa28.4■■■□□ 2.14
PVT1-220ENST00000524165 TMEM94Q12767 1356 aa28.39■■■□□ 2.14
PVT1-220ENST00000524165 EIF2AK4Q9P2K8 1649 aaKnown RBP28.39■■■□□ 2.13
PVT1-220ENST00000524165 EID1Q9Y6B2 187 aa28.37■■■□□ 2.13
PVT1-220ENST00000524165 CEP152O94986 1710 aa28.36■■■□□ 2.13
PVT1-220ENST00000524165 TSPY4P0CV99 314 aa28.36■■■□□ 2.13
PVT1-220ENST00000524165 TSPY10P0CW01 314 aa28.36■■■□□ 2.13
PVT1-220ENST00000524165 UPF1Q92900 1129 aaKnown RBP eCLIP28.36■■■□□ 2.13
PVT1-220ENST00000524165 MAP3K1Q13233 1512 aa28.36■■■□□ 2.13
PVT1-220ENST00000524165 MROH1Q8NDA8 1641 aa28.35■■■□□ 2.13
PVT1-220ENST00000524165 PHLPP1O60346 1717 aa28.34■■■□□ 2.13
PVT1-220ENST00000524165 CHIC1Q5VXU3 224 aa28.33■■■□□ 2.13
PVT1-220ENST00000524165 JCADQ9P266 1359 aa28.33■■■□□ 2.13
PVT1-220ENST00000524165 KCNA6P17658 529 aa28.31■■■□□ 2.12
PVT1-220ENST00000524165 MAST1Q9Y2H9 1570 aa28.29■■■□□ 2.12
PVT1-220ENST00000524165 TMEM2Q9UHN6 1383 aa28.27■■■□□ 2.12
PVT1-220ENST00000524165 PROSER2Q86WR7 435 aaPredicted RBP28.27■■■□□ 2.12
PVT1-220ENST00000524165 PRDM15P57071 1507 aaPredicted RBP28.27■■■□□ 2.12
PVT1-220ENST00000524165 ARHGAP31Q2M1Z3 1444 aa28.26■■■□□ 2.12
PVT1-220ENST00000524165 PIK3C2BO00750 1634 aa28.25■■■□□ 2.11
PVT1-220ENST00000524165 KDM5AP29375 1690 aaKnown RBP28.25■■■□□ 2.11
PVT1-220ENST00000524165 NKTRP30414 1462 aaKnown RBP28.24■■■□□ 2.11
PVT1-220ENST00000524165 ZNF772Q68DY9 489 aaPredicted RBP28.23■■■□□ 2.11
PVT1-220ENST00000524165 TET3O43151 1660 aa28.23■■■□□ 2.11
PVT1-220ENST00000524165 NWD1Q149M9 1564 aa28.22■■■□□ 2.11
PVT1-220ENST00000524165 COL16A1Q07092 1604 aaPredicted RBP28.21■■■□□ 2.11
PVT1-220ENST00000524165 SLAIN2Q9P270 581 aa28.21■■■□□ 2.11
PVT1-220ENST00000524165 MSH6P52701 1360 aa28.21■■■□□ 2.11
PVT1-220ENST00000524165 SPATA31A6Q5VVP1 1343 aa28.19■■■□□ 2.1
PVT1-220ENST00000524165 RBM33Q96EV2 1170 aaKnown RBP28.19■■■□□ 2.1
PVT1-220ENST00000524165 LRP6O75581 1613 aa28.18■■■□□ 2.1
PVT1-220ENST00000524165 FGD6Q6ZV73 1430 aa28.18■■■□□ 2.1
PVT1-220ENST00000524165 TRIM52Q96A61 297 aa28.17■■■□□ 2.1
PVT1-220ENST00000524165 EFCAB6Q5THR3 1501 aa28.17■■■□□ 2.1
PVT1-220ENST00000524165 SLC26A8Q96RN1 970 aa28.15■■■□□ 2.1
PVT1-220ENST00000524165 STAG3Q9UJ98 1225 aa28.15■■■□□ 2.1
PVT1-220ENST00000524165 DUOX2Q9NRD8 1548 aa28.14■■■□□ 2.1
PVT1-220ENST00000524165 MEX3CQ5U5Q3 659 aaKnown RBP28.13■■■□□ 2.09
PVT1-220ENST00000524165 CDK12Q9NYV4 1490 aaPredicted RBP28.13■■■□□ 2.09
PVT1-220ENST00000524165 SRCAPQ6ZRS2 3230 aa28.12■■■□□ 2.09
PVT1-220ENST00000524165 SHPRHQ149N8 1683 aa28.11■■■□□ 2.09
PVT1-220ENST00000524165 RXRBP28702 533 aa28.1■■■□□ 2.09
PVT1-220ENST00000524165 CHD2O14647 1828 aaKnown RBP28.07■■■□□ 2.08
PVT1-220ENST00000524165 IDI1Q13907 227 aa28.05■■■□□ 2.08
PVT1-220ENST00000524165 AHDC1Q5TGY3 1603 aaPredicted RBP28.04■■■□□ 2.08
PVT1-220ENST00000524165 ERBINQ96RT1 1412 aa28.02■■■□□ 2.08
PVT1-220ENST00000524165 NCOA3Q9Y6Q9 1424 aa28.01■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms