RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 GPATCH8Q9UKJ3 1502 aaKnown RBP10.64□□□□□ -0.71
HDAC3-216ENST00000523088 ARID3AQ99856 593 aa10.64□□□□□ -0.71
HDAC3-216ENST00000523088 SAMD9LQ8IVG5 1584 aa10.64□□□□□ -0.71
HDAC3-216ENST00000523088 SUPT6HQ7KZ85 1726 aaKnown RBP10.64□□□□□ -0.71
HDAC3-216ENST00000523088 CCNB3Q8WWL7 1395 aa10.64□□□□□ -0.71
HDAC3-216ENST00000523088 KIDINS220Q9ULH0 1771 aa10.63□□□□□ -0.71
HDAC3-216ENST00000523088 PREX1Q8TCU6 1659 aa10.63□□□□□ -0.71
HDAC3-216ENST00000523088 SYCP2Q9BX26 1530 aa10.62□□□□□ -0.71
HDAC3-216ENST00000523088 TIAM1Q13009 1591 aa10.61□□□□□ -0.71
HDAC3-216ENST00000523088 CNTLNQ9NXG0 1405 aa10.61□□□□□ -0.71
HDAC3-216ENST00000523088 LMTK3Q96Q04 1460 aa10.61□□□□□ -0.71
HDAC3-216ENST00000523088 INO80Q9ULG1 1556 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-216ENST00000523088 ADGBQ8N7X0 1667 aa10.6□□□□□ -0.71
HDAC3-216ENST00000523088 TRAPPC8Q9Y2L5 1435 aa10.6□□□□□ -0.71
HDAC3-216ENST00000523088 ATP7AQ04656 1500 aa10.6□□□□□ -0.71
HDAC3-216ENST00000523088 AFAP1Q8N556 730 aa10.6□□□□□ -0.71
HDAC3-216ENST00000523088 CFDP1Q9UEE9 299 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-216ENST00000523088 MROH2AA6NES4 1674 aa10.6□□□□□ -0.71
HDAC3-216ENST00000523088 VPS8Q8N3P4 1428 aa10.59□□□□□ -0.71
HDAC3-216ENST00000523088 MAP3K1Q13233 1512 aa10.59□□□□□ -0.71
HDAC3-216ENST00000523088 ESF1Q9H501 851 aaKnown RBP10.58□□□□□ -0.72
HDAC3-216ENST00000523088 SALL2Q9Y467 1007 aaPredicted RBP10.58□□□□□ -0.72
HDAC3-216ENST00000523088 SPAG9O60271 1321 aaKnown RBP10.58□□□□□ -0.72
HDAC3-216ENST00000523088 PLXNC1O60486 1568 aa10.57□□□□□ -0.72
HDAC3-216ENST00000523088 NAP1L5Q96NT1 182 aaPredicted RBP10.57□□□□□ -0.72
HDAC3-216ENST00000523088 PUS7Q96PZ0 661 aaKnown RBP10.57□□□□□ -0.72
HDAC3-216ENST00000523088 C3P01024 1663 aa10.57□□□□□ -0.72
HDAC3-216ENST00000523088 MLECQ14165 292 aa10.56□□□□□ -0.72
HDAC3-216ENST00000523088 ZNF777Q9ULD5 760 aaPredicted RBP10.56□□□□□ -0.72
HDAC3-216ENST00000523088 FAM135AQ9P2D6 1515 aa10.56□□□□□ -0.72
HDAC3-216ENST00000523088 RTEL1-TNFRSF6BF6WH68 1400 aa10.56□□□□□ -0.72
HDAC3-216ENST00000523088 NCOA2Q15596 1464 aa10.55□□□□□ -0.72
HDAC3-216ENST00000523088 UHRF1BP1Q6BDS2 1440 aa10.55□□□□□ -0.72
HDAC3-216ENST00000523088 A2MP01023 1474 aa10.55□□□□□ -0.72
HDAC3-216ENST00000523088 ARHGEF5Q12774 1597 aa10.54□□□□□ -0.72
HDAC3-216ENST00000523088 PPP6R1Q9UPN7 881 aa10.54□□□□□ -0.72
HDAC3-216ENST00000523088 CCDC141Q6ZP82 1450 aa10.54□□□□□ -0.72
HDAC3-216ENST00000523088 LRRC9Q6ZRR7 1453 aa10.53□□□□□ -0.72
HDAC3-216ENST00000523088 NPATQ14207 1427 aa10.52□□□□□ -0.73
HDAC3-216ENST00000523088 RBM10P98175 930 aaKnown RBP10.52□□□□□ -0.73
HDAC3-216ENST00000523088 CAMSAP2Q08AD1 1489 aa10.52□□□□□ -0.73
HDAC3-216ENST00000523088 MBD5Q9P267 1494 aa10.52□□□□□ -0.73
HDAC3-216ENST00000523088 HNRNPMP52272 730 aaKnown RBP eCLIP10.51□□□□□ -0.73
HDAC3-216ENST00000523088 MIA2Q96PC5 1412 aa10.5□□□□□ -0.73
HDAC3-216ENST00000523088 NEUROD1Q13562 356 aa10.5□□□□□ -0.73
HDAC3-216ENST00000523088 DMRT2Q9Y5R5 561 aa10.5□□□□□ -0.73
HDAC3-216ENST00000523088 CLTCQ00610 1675 aaKnown RBP10.5□□□□□ -0.73
HDAC3-216ENST00000523088 MAST1Q9Y2H9 1570 aa10.49□□□□□ -0.73
HDAC3-216ENST00000523088 CCDC9Q9Y3X0 531 aaKnown RBP10.49□□□□□ -0.73
HDAC3-216ENST00000523088 ZNF142P52746 1687 aaPredicted RBP10.48□□□□□ -0.73
HDAC3-216ENST00000523088 EIF2AK4Q9P2K8 1649 aaKnown RBP10.47□□□□□ -0.73
HDAC3-216ENST00000523088 DHX29Q7Z478 1369 aaKnown RBP10.47□□□□□ -0.73
HDAC3-216ENST00000523088 MYOM3Q5VTT5 1437 aa10.47□□□□□ -0.73
HDAC3-216ENST00000523088 ZC3H13Q5T200 1668 aaKnown RBP10.47□□□□□ -0.73
HDAC3-216ENST00000523088 TSPY4P0CV99 314 aa10.46□□□□□ -0.73
HDAC3-216ENST00000523088 TSPY10P0CW01 314 aa10.46□□□□□ -0.73
HDAC3-216ENST00000523088 KDM5DQ9BY66 1539 aa10.46□□□□□ -0.74
HDAC3-216ENST00000523088 STRCQ7RTU9 1775 aa10.45□□□□□ -0.74
HDAC3-216ENST00000523088 MYO3AQ8NEV4 1616 aa10.45□□□□□ -0.74
HDAC3-216ENST00000523088 ZMYM3Q14202 1370 aa10.45□□□□□ -0.74
HDAC3-216ENST00000523088 ILDR1Q86SU0 546 aaPredicted RBP10.45□□□□□ -0.74
HDAC3-216ENST00000523088 TICAM2Q86XR7 235 aa10.45□□□□□ -0.74
HDAC3-216ENST00000523088 PPARGC1BQ86YN6 1023 aaKnown RBP10.45□□□□□ -0.74
HDAC3-216ENST00000523088 ZMYND15Q9H091 742 aa10.45□□□□□ -0.74
HDAC3-216ENST00000523088 ZNF644Q9H582 1327 aaPredicted RBP10.44□□□□□ -0.74
HDAC3-216ENST00000523088 HSPA2P54652 639 aa10.44□□□□□ -0.74
HDAC3-216ENST00000523088 FBXO41Q8TF61 875 aa10.44□□□□□ -0.74
HDAC3-216ENST00000523088 CROCC2H7BZ55 1655 aa10.44□□□□□ -0.74
HDAC3-216ENST00000523088 RNF17Q9BXT8 1623 aaKnown RBP10.44□□□□□ -0.74
HDAC3-216ENST00000523088 SHANK2Q9UPX8 1470 aa10.43□□□□□ -0.74
HDAC3-216ENST00000523088 PTPRTO14522 1441 aa10.43□□□□□ -0.74
HDAC3-216ENST00000523088 CEBPAP49715 358 aaPredicted RBP10.43□□□□□ -0.74
HDAC3-216ENST00000523088 CEP170BQ9Y4F5 1589 aaPredicted RBP10.43□□□□□ -0.74
HDAC3-216ENST00000523088 PLA2R1Q13018 1463 aa10.42□□□□□ -0.74
HDAC3-216ENST00000523088 PTPRKQ15262 1439 aa10.41□□□□□ -0.74
HDAC3-216ENST00000523088 NCOA1Q15788 1441 aa10.41□□□□□ -0.74
HDAC3-216ENST00000523088 IGSF3O75054 1194 aa10.41□□□□□ -0.74
HDAC3-216ENST00000523088 GGT6Q6P531 493 aa10.41□□□□□ -0.74
HDAC3-216ENST00000523088 PAXIP1Q6ZW49 1069 aaPredicted RBP10.41□□□□□ -0.74
HDAC3-216ENST00000523088 POLR3GLQ9BT43 218 aa10.41□□□□□ -0.74
HDAC3-216ENST00000523088 DUOX2Q9NRD8 1548 aa10.41□□□□□ -0.74
HDAC3-216ENST00000523088 PZPP20742 1482 aa10.41□□□□□ -0.74
HDAC3-216ENST00000523088 PTPN23Q9H3S7 1636 aa10.4□□□□□ -0.74
HDAC3-216ENST00000523088 A0A0U1RQG5 324 aaPredicted RBP10.4□□□□□ -0.74
HDAC3-216ENST00000523088 CLSTN1O94985 981 aa10.4□□□□□ -0.74
HDAC3-216ENST00000523088 CHRM1P11229 460 aaPredicted RBP10.4□□□□□ -0.74
HDAC3-216ENST00000523088 CAMSAP1Q5T5Y3 1602 aa10.4□□□□□ -0.75
HDAC3-216ENST00000523088 IQSEC2Q5JU85 1478 aa10.39□□□□□ -0.75
HDAC3-216ENST00000523088 CCDC136Q96JN2 1154 aa10.39□□□□□ -0.75
HDAC3-216ENST00000523088 DNMT1P26358 1616 aaKnown RBP10.39□□□□□ -0.75
HDAC3-216ENST00000523088 POLR1AO95602 1720 aaPredicted RBP10.38□□□□□ -0.75
HDAC3-216ENST00000523088 A2ML1A8K2U0 1454 aa10.38□□□□□ -0.75
HDAC3-216ENST00000523088 TCOF1Q13428 1488 aaKnown RBP10.38□□□□□ -0.75
HDAC3-216ENST00000523088 NLRP1Q9C000 1473 aa10.38□□□□□ -0.75
HDAC3-216ENST00000523088 KIF3BO15066 747 aa10.38□□□□□ -0.75
HDAC3-216ENST00000523088 DEKP35659 375 aaKnown RBP10.38□□□□□ -0.75
HDAC3-216ENST00000523088 ERBINQ96RT1 1412 aa10.38□□□□□ -0.75
HDAC3-216ENST00000523088 WASHC2CQ9Y4E1 1318 aa10.37□□□□□ -0.75
HDAC3-216ENST00000523088 PKD2Q13563 968 aa10.37□□□□□ -0.75
HDAC3-216ENST00000523088 KANK4Q5T7N3 995 aaPredicted RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms