RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 GGT6Q6P531 493 aa24.25■■□□□ 1.47
LSM1-204ENST00000522515 MROH1Q8NDA8 1641 aa24.24■■□□□ 1.47
LSM1-204ENST00000522515 UNC13BO14795 1591 aa24.23■■□□□ 1.47
LSM1-204ENST00000522515 HRCP23327 699 aa24.23■■□□□ 1.47
LSM1-204ENST00000522515 MLECQ14165 292 aa24.23■■□□□ 1.47
LSM1-204ENST00000522515 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.23■■□□□ 1.478e-6■□□□□ 10.1
LSM1-204ENST00000522515 PRDM15P57071 1507 aaPredicted RBP24.2■■□□□ 1.47
LSM1-204ENST00000522515 TRIM52Q96A61 297 aa24.2■■□□□ 1.46
LSM1-204ENST00000522515 NUP155O75694 1391 aa24.19■■□□□ 1.46
LSM1-204ENST00000522515 VWDEQ8N2E2 1590 aa24.15■■□□□ 1.46
LSM1-204ENST00000522515 KANK1Q14678 1352 aa24.15■■□□□ 1.46
LSM1-204ENST00000522515 ACIN1Q9UKV3 1341 aaKnown RBP24.15■■□□□ 1.46
LSM1-204ENST00000522515 KDM5DQ9BY66 1539 aa24.14■■□□□ 1.46
LSM1-204ENST00000522515 IQGAP3Q86VI3 1631 aa24.14■■□□□ 1.45
LSM1-204ENST00000522515 PPP6R1Q9UPN7 881 aa24.12■■□□□ 1.45
LSM1-204ENST00000522515 PZPP20742 1482 aa24.12■■□□□ 1.45
LSM1-204ENST00000522515 WASHC2CQ9Y4E1 1318 aa24.12■■□□□ 1.45
LSM1-204ENST00000522515 FAM135AQ9P2D6 1515 aa24.11■■□□□ 1.45
LSM1-204ENST00000522515 CEP152O94986 1710 aa24.11■■□□□ 1.45
LSM1-204ENST00000522515 ABCC3O15438 1527 aa24.1■■□□□ 1.45
LSM1-204ENST00000522515 ZC3H13Q5T200 1668 aaKnown RBP24.08■■□□□ 1.45
LSM1-204ENST00000522515 ADAMTSL3P82987 1691 aa24.08■■□□□ 1.44
LSM1-204ENST00000522515 CLTCQ00610 1675 aaKnown RBP24.08■■□□□ 1.44
LSM1-204ENST00000522515 LMTK2Q8IWU2 1503 aa24.07■■□□□ 1.44
LSM1-204ENST00000522515 MPHOSPH9Q99550 1183 aa24.07■■□□□ 1.44
LSM1-204ENST00000522515 SLC4A1APQ9BWU0 796 aaKnown RBP24.07■■□□□ 1.44
LSM1-204ENST00000522515 ESF1Q9H501 851 aaKnown RBP24.06■■□□□ 1.44
LSM1-204ENST00000522515 FER1L4A9Z1Z3 1794 aa24.06■■□□□ 1.44
LSM1-204ENST00000522515 MADDQ8WXG6 1647 aa24.05■■□□□ 1.44
LSM1-204ENST00000522515 TET3O43151 1660 aa24.04■■□□□ 1.44
LSM1-204ENST00000522515 CAMSAP1Q5T5Y3 1602 aa24.03■■□□□ 1.44
LSM1-204ENST00000522515 CNTLNQ9NXG0 1405 aa24.02■■□□□ 1.44
LSM1-204ENST00000522515 EFCAB6Q5THR3 1501 aa24.01■■□□□ 1.43
LSM1-204ENST00000522515 DHX57Q6P158 1386 aaKnown RBP24.01■■□□□ 1.43
LSM1-204ENST00000522515 PKD2Q13563 968 aa24.01■■□□□ 1.43
LSM1-204ENST00000522515 E9PCH4 1651 aa23.99■■□□□ 1.43
LSM1-204ENST00000522515 RIMS1Q86UR5 1692 aaKnown RBP23.99■■□□□ 1.43
LSM1-204ENST00000522515 ZMYM3Q14202 1370 aa23.98■■□□□ 1.43
LSM1-204ENST00000522515 MROH2AA6NES4 1674 aa23.98■■□□□ 1.43
LSM1-204ENST00000522515 FOXD1Q16676 465 aa23.98■■□□□ 1.43
LSM1-204ENST00000522515 NPATQ14207 1427 aa23.97■■□□□ 1.43
LSM1-204ENST00000522515 ARHGAP31Q2M1Z3 1444 aa23.97■■□□□ 1.43
LSM1-204ENST00000522515 KDM4FA0A1W2PPD8 638 aa23.95■■□□□ 1.42
LSM1-204ENST00000522515 RPRD2Q5VT52 1461 aaKnown RBP23.93■■□□□ 1.42
LSM1-204ENST00000522515 CEBPAP49715 358 aaPredicted RBP23.93■■□□□ 1.42
LSM1-204ENST00000522515 C3P01024 1663 aa23.93■■□□□ 1.42
LSM1-204ENST00000522515 FBXO31Q5XUX0 539 aaPredicted RBP23.91■■□□□ 1.42
LSM1-204ENST00000522515 CFAP65Q6ZU64 1925 aaKnown RBP23.9■■□□□ 1.42
LSM1-204ENST00000522515 PTPRMP28827 1452 aa23.89■■□□□ 1.41
LSM1-204ENST00000522515 PLPPR3Q6T4P5 718 aa23.89■■□□□ 1.41
LSM1-204ENST00000522515 PREX1Q8TCU6 1659 aa23.88■■□□□ 1.41
LSM1-204ENST00000522515 ERVK-7P63135 1459 aa23.87■■□□□ 1.41
LSM1-204ENST00000522515 SPHKAPQ2M3C7 1700 aa23.86■■□□□ 1.41
LSM1-204ENST00000522515 PLA2R1Q13018 1463 aa23.86■■□□□ 1.41
LSM1-204ENST00000522515 PTPRTO14522 1441 aa23.86■■□□□ 1.41
LSM1-204ENST00000522515 NOS1P29475 1434 aa23.86■■□□□ 1.41
LSM1-204ENST00000522515 CCER1Q8TC90 406 aaPredicted RBP23.86■■□□□ 1.41
LSM1-204ENST00000522515 ANKRD30BQ9BXX2 1392 aa23.85■■□□□ 1.41
LSM1-204ENST00000522515 SPATA31D1Q6ZQQ2 1576 aa23.85■■□□□ 1.41
LSM1-204ENST00000522515 SYNMO15061 1565 aa23.82■■□□□ 1.4
LSM1-204ENST00000522515 TRPM2O94759 1503 aa23.82■■□□□ 1.4
LSM1-204ENST00000522515 UGGT1Q9NYU2 1555 aa23.79■■□□□ 1.4
LSM1-204ENST00000522515 TNRQ92752 1358 aa23.79■■□□□ 1.4
LSM1-204ENST00000522515 CLTCL1P53675 1640 aa23.76■■□□□ 1.39
LSM1-204ENST00000522515 CCDC144AA2RUR9 1427 aa23.76■■□□□ 1.39
LSM1-204ENST00000522515 SIN3AQ96ST3 1273 aa23.75■■□□□ 1.39
LSM1-204ENST00000522515 PIK3C2BO00750 1634 aa23.75■■□□□ 1.39
LSM1-204ENST00000522515 CLSPNQ9HAW4 1339 aa23.74■■□□□ 1.39
LSM1-204ENST00000522515 IDI1Q13907 227 aa23.74■■□□□ 1.39
LSM1-204ENST00000522515 SLC52A1Q9NWF4 448 aa23.74■■□□□ 1.39
LSM1-204ENST00000522515 MYO3AQ8NEV4 1616 aa23.69■■□□□ 1.38
LSM1-204ENST00000522515 NLRP1Q9C000 1473 aa23.69■■□□□ 1.38
LSM1-204ENST00000522515 NEUROD1Q13562 356 aa23.69■■□□□ 1.38
LSM1-204ENST00000522515 SETD1BQ9UPS6 1966 aaKnown RBP23.68■■□□□ 1.38
LSM1-204ENST00000522515 KIF1BO60333 1816 aa23.65■■□□□ 1.38
LSM1-204ENST00000522515 CHGAP10645 457 aaKnown RBP23.65■■□□□ 1.38
LSM1-204ENST00000522515 TMEM131LA2VDJ0 1609 aa23.63■■□□□ 1.37
LSM1-204ENST00000522515 SPATA31E1Q6ZUB1 1445 aa23.63■■□□□ 1.37
LSM1-204ENST00000522515 CEP170BQ9Y4F5 1589 aaPredicted RBP23.62■■□□□ 1.37
LSM1-204ENST00000522515 A2ML1A8K2U0 1454 aa23.62■■□□□ 1.37
LSM1-204ENST00000522515 ADGRB3O60242 1522 aa23.62■■□□□ 1.37
LSM1-204ENST00000522515 UHRF1BP1Q6BDS2 1440 aa23.62■■□□□ 1.37
LSM1-204ENST00000522515 STAG3Q9UJ98 1225 aa23.61■■□□□ 1.37
LSM1-204ENST00000522515 UBR1Q8IWV7 1749 aa23.6■■□□□ 1.37
LSM1-204ENST00000522515 MYO5BQ9ULV0 1848 aa23.6■■□□□ 1.37
LSM1-204ENST00000522515 ZNF142P52746 1687 aaPredicted RBP23.6■■□□□ 1.37
LSM1-204ENST00000522515 RGL3Q3MIN7 710 aa23.6■■□□□ 1.37
LSM1-204ENST00000522515 KDM5AP29375 1690 aaKnown RBP23.59■■□□□ 1.37
LSM1-204ENST00000522515 NEURL4Q96JN8 1562 aa23.58■■□□□ 1.37
LSM1-204ENST00000522515 ZNF326Q5BKZ1 582 aaKnown RBP23.55■■□□□ 1.36
LSM1-204ENST00000522515 TONSLQ96HA7 1378 aa23.53■■□□□ 1.36
LSM1-204ENST00000522515 THEMISQ8N1K5 641 aaPredicted RBP23.52■■□□□ 1.36
LSM1-204ENST00000522515 L3MBTL2Q969R5 705 aa23.52■■□□□ 1.36
LSM1-204ENST00000522515 LMTK3Q96Q04 1460 aa23.51■■□□□ 1.35
LSM1-204ENST00000522515 TMEM2Q9UHN6 1383 aa23.5■■□□□ 1.35
LSM1-204ENST00000522515 NEXMIFQ5QGS0 1516 aa23.49■■□□□ 1.35
LSM1-204ENST00000522515 RPGRIP1LQ68CZ1 1315 aa23.48■■□□□ 1.35
LSM1-204ENST00000522515 DCAF11Q8TEB1 546 aa23.48■■□□□ 1.35
LSM1-204ENST00000522515 RIMS2Q9UQ26 1411 aa23.47■■□□□ 1.35
LSM1-204ENST00000522515 IFT172Q9UG01 1749 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms