RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 LRRC7Q96NW7 1537 aa15.35■□□□□ 0.05
NUP54-211ENST00000512151 EEA1Q15075 1411 aa15.35■□□□□ 0.05
NUP54-211ENST00000512151 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.35■□□□□ 0.05
NUP54-211ENST00000512151 ZNF777Q9ULD5 760 aaPredicted RBP15.35■□□□□ 0.05
NUP54-211ENST00000512151 INO80Q9ULG1 1556 aaPredicted RBP15.34■□□□□ 0.05
NUP54-211ENST00000512151 TNRQ92752 1358 aa15.33■□□□□ 0.04
NUP54-211ENST00000512151 NPHP4O75161 1426 aaPredicted RBP15.32■□□□□ 0.04
NUP54-211ENST00000512151 ANKLE2Q86XL3 938 aa15.32■□□□□ 0.04
NUP54-211ENST00000512151 SETD1AO15047 1707 aaKnown RBP15.32■□□□□ 0.04
NUP54-211ENST00000512151 MED14O60244 1454 aa15.32■□□□□ 0.04
NUP54-211ENST00000512151 RNF17Q9BXT8 1623 aaKnown RBP15.32■□□□□ 0.04
NUP54-211ENST00000512151 EHMT2Q96KQ7 1210 aa15.31■□□□□ 0.04
NUP54-211ENST00000512151 GPATCH8Q9UKJ3 1502 aaKnown RBP15.29■□□□□ 0.04
NUP54-211ENST00000512151 DEPDC5O75140 1603 aa15.29■□□□□ 0.04
NUP54-211ENST00000512151 IQGAP1P46940 1657 aa15.27■□□□□ 0.03
NUP54-211ENST00000512151 SYNMO15061 1565 aa15.26■□□□□ 0.03
NUP54-211ENST00000512151 KIAA1107Q9UPP5 1409 aa15.26■□□□□ 0.03
NUP54-211ENST00000512151 PZPP20742 1482 aa15.25■□□□□ 0.03
NUP54-211ENST00000512151 ADGBQ8N7X0 1667 aa15.25■□□□□ 0.03
NUP54-211ENST00000512151 THEMISQ8N1K5 641 aaPredicted RBP15.24■□□□□ 0.03
NUP54-211ENST00000512151 UGGT1Q9NYU2 1555 aa15.24■□□□□ 0.03
NUP54-211ENST00000512151 UBTFP17480 764 aaKnown RBP15.24■□□□□ 0.03
NUP54-211ENST00000512151 MIA2Q96PC5 1412 aa15.23■□□□□ 0.03
NUP54-211ENST00000512151 CCDC18Q5T9S5 1454 aa15.23■□□□□ 0.03
NUP54-211ENST00000512151 XIRP1Q702N8 1843 aaKnown RBP15.22■□□□□ 0.03
NUP54-211ENST00000512151 CASKIN1Q8WXD9 1431 aa15.22■□□□□ 0.03
NUP54-211ENST00000512151 FAM135AQ9P2D6 1515 aa15.21■□□□□ 0.03
NUP54-211ENST00000512151 NLRP1Q9C000 1473 aa15.21■□□□□ 0.02
NUP54-211ENST00000512151 PLEKHH2Q8IVE3 1493 aa15.2■□□□□ 0.02
NUP54-211ENST00000512151 ZC3H13Q5T200 1668 aaKnown RBP15.2■□□□□ 0.02
NUP54-211ENST00000512151 KDM5DQ9BY66 1539 aa15.2■□□□□ 0.02
NUP54-211ENST00000512151 DHX29Q7Z478 1369 aaKnown RBP15.19■□□□□ 0.02
NUP54-211ENST00000512151 CFDP1Q9UEE9 299 aaPredicted RBP15.19■□□□□ 0.02
NUP54-211ENST00000512151 ZNF644Q9H582 1327 aaPredicted RBP15.19■□□□□ 0.02
NUP54-211ENST00000512151 FAM135BQ49AJ0 1406 aa15.18■□□□□ 0.02
NUP54-211ENST00000512151 UPF1Q92900 1129 aaKnown RBP eCLIP15.18■□□□□ 0.02
NUP54-211ENST00000512151 KIF3BO15066 747 aa15.17■□□□□ 0.02
NUP54-211ENST00000512151 MBD5Q9P267 1494 aa15.16■□□□□ 0.02
NUP54-211ENST00000512151 WASHC2CQ9Y4E1 1318 aa15.15■□□□□ 0.02
NUP54-211ENST00000512151 RTEL1-TNFRSF6BF6WH68 1400 aa15.13■□□□□ 0.01
NUP54-211ENST00000512151 CCNB3Q8WWL7 1395 aa15.13■□□□□ 0.01
NUP54-211ENST00000512151 ROBO1Q9Y6N7 1651 aa15.12■□□□□ 0.01
NUP54-211ENST00000512151 LTKP29376 864 aa15.11■□□□□ 0.01
NUP54-211ENST00000512151 NCOA2Q15596 1464 aa15.09■□□□□ 0.01
NUP54-211ENST00000512151 SCAF11Q99590 1463 aaKnown RBP15.09■□□□□ 0.01
NUP54-211ENST00000512151 FYCO1Q9BQS8 1478 aa15.09■□□□□ 0.01
NUP54-211ENST00000512151 UBR1Q8IWV7 1749 aa15.08■□□□□ 0
NUP54-211ENST00000512151 TMEM94Q12767 1356 aa15.07■□□□□ 0
NUP54-211ENST00000512151 ERVK-7P63135 1459 aa15.07■□□□□ 0
NUP54-211ENST00000512151 TIAM1Q13009 1591 aa15.07■□□□□ 0
NUP54-211ENST00000512151 MAP3K1Q13233 1512 aa15.06■□□□□ 0
NUP54-211ENST00000512151 ARHGAP23Q9P227 1491 aa15.06■□□□□ 0
NUP54-211ENST00000512151 TRIM52Q96A61 297 aa15.06■□□□□ 0
NUP54-211ENST00000512151 RBM33Q96EV2 1170 aaKnown RBP15.06■□□□□ 0
NUP54-211ENST00000512151 LRP6O75581 1613 aa15.05■□□□□ 0
NUP54-211ENST00000512151 TXNDC2Q86VQ3 553 aa15.05■□□□□ -0
NUP54-211ENST00000512151 ABCC3O15438 1527 aa15.05■□□□□ -0
NUP54-211ENST00000512151 SLIT1O75093 1534 aa15.03■□□□□ -0
NUP54-211ENST00000512151 PHLPP1O60346 1717 aa15.03■□□□□ -0
NUP54-211ENST00000512151 JCADQ9P266 1359 aa15.03■□□□□ -0
NUP54-211ENST00000512151 CFAP65Q6ZU64 1925 aaKnown RBP15.02■□□□□ -0
NUP54-211ENST00000512151 CCDC141Q6ZP82 1450 aa15□□□□□ -0.01
NUP54-211ENST00000512151 LRRC9Q6ZRR7 1453 aa14.99□□□□□ -0.01
NUP54-211ENST00000512151 MTUS2Q5JR59 1369 aa14.99□□□□□ -0.01
NUP54-211ENST00000512151 KCNA6P17658 529 aa14.98□□□□□ -0.01
NUP54-211ENST00000512151 PROSER2Q86WR7 435 aaPredicted RBP14.98□□□□□ -0.01
NUP54-211ENST00000512151 COL16A1Q07092 1604 aaPredicted RBP14.98□□□□□ -0.01
NUP54-211ENST00000512151 MROH1Q8NDA8 1641 aa14.97□□□□□ -0.01
NUP54-211ENST00000512151 ZNF772Q68DY9 489 aaPredicted RBP14.97□□□□□ -0.01
NUP54-211ENST00000512151 SLAIN2Q9P270 581 aa14.96□□□□□ -0.02
NUP54-211ENST00000512151 CAMSAP2Q08AD1 1489 aa14.96□□□□□ -0.02
NUP54-211ENST00000512151 CEP152O94986 1710 aa14.95□□□□□ -0.02
NUP54-211ENST00000512151 PRDM15P57071 1507 aaPredicted RBP14.95□□□□□ -0.02
NUP54-211ENST00000512151 SRCAPQ6ZRS2 3230 aa14.95□□□□□ -0.02
NUP54-211ENST00000512151 SLC26A8Q96RN1 970 aa14.95□□□□□ -0.02
NUP54-211ENST00000512151 EID1Q9Y6B2 187 aa14.95□□□□□ -0.02
NUP54-211ENST00000512151 RXRBP28702 533 aa14.94□□□□□ -0.02
NUP54-211ENST00000512151 MEX3CQ5U5Q3 659 aaKnown RBP14.94□□□□□ -0.02
NUP54-211ENST00000512151 TET3O43151 1660 aa14.94□□□□□ -0.02
NUP54-211ENST00000512151 TMEM2Q9UHN6 1383 aa14.94□□□□□ -0.02
NUP54-211ENST00000512151 SPATA31A6Q5VVP1 1343 aa14.93□□□□□ -0.02
NUP54-211ENST00000512151 NWD1Q149M9 1564 aa14.92□□□□□ -0.02
NUP54-211ENST00000512151 PIK3C2BO00750 1634 aa14.92□□□□□ -0.02
NUP54-211ENST00000512151 CEP162Q5TB80 1403 aa14.92□□□□□ -0.02
NUP54-211ENST00000512151 CDK12Q9NYV4 1490 aaPredicted RBP14.92□□□□□ -0.02
NUP54-211ENST00000512151 MSH6P52701 1360 aa14.91□□□□□ -0.02
NUP54-211ENST00000512151 EHBP1L1Q8N3D4 1523 aa14.91□□□□□ -0.02
NUP54-211ENST00000512151 FGD6Q6ZV73 1430 aa14.9□□□□□ -0.02
NUP54-211ENST00000512151 NKTRP30414 1462 aaKnown RBP14.9□□□□□ -0.02
NUP54-211ENST00000512151 ARHGEF5Q12774 1597 aa14.89□□□□□ -0.03
NUP54-211ENST00000512151 RSPH4AQ5TD94 716 aa14.89□□□□□ -0.03
NUP54-211ENST00000512151 SHPRHQ149N8 1683 aa14.88□□□□□ -0.03
NUP54-211ENST00000512151 EIF2AK4Q9P2K8 1649 aaKnown RBP14.88□□□□□ -0.03
NUP54-211ENST00000512151 RGS12O14924 1447 aa14.88□□□□□ -0.03
NUP54-211ENST00000512151 ARHGAP31Q2M1Z3 1444 aa14.87□□□□□ -0.03
NUP54-211ENST00000512151 KDM5AP29375 1690 aaKnown RBP14.86□□□□□ -0.03
NUP54-211ENST00000512151 AHDC1Q5TGY3 1603 aaPredicted RBP14.86□□□□□ -0.03
NUP54-211ENST00000512151 AFF2P51816 1311 aa14.86□□□□□ -0.03
NUP54-211ENST00000512151 TSPY4P0CV99 314 aa14.85□□□□□ -0.03
NUP54-211ENST00000512151 TSPY10P0CW01 314 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms