RNA–Protein interactions for RNA: ENST00000508235.1

RNF4-210, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-210ENST00000508235 FAM135AQ9P2D6 1515 aa22.81■■□□□ 1.24
RNF4-210ENST00000508235 MROH2AA6NES4 1674 aa22.8■■□□□ 1.24
RNF4-210ENST00000508235 RNF17Q9BXT8 1623 aaKnown RBP22.79■■□□□ 1.24
RNF4-210ENST00000508235 ITGAEP38570 1179 aa22.79■■□□□ 1.24
RNF4-210ENST00000508235 PTPRKQ15262 1439 aa22.79■■□□□ 1.24
RNF4-210ENST00000508235 CLTCQ00610 1675 aaKnown RBP22.77■■□□□ 1.24
RNF4-210ENST00000508235 KDM5DQ9BY66 1539 aa22.74■■□□□ 1.23
RNF4-210ENST00000508235 C3P01024 1663 aa22.74■■□□□ 1.23
RNF4-210ENST00000508235 ANKRD50Q9ULJ7 1429 aa22.74■■□□□ 1.23
RNF4-210ENST00000508235 ZC3H13Q5T200 1668 aaKnown RBP22.73■■□□□ 1.23
RNF4-210ENST00000508235 DEPDC5O75140 1603 aa22.71■■□□□ 1.23
RNF4-210ENST00000508235 WASHC2CQ9Y4E1 1318 aa22.71■■□□□ 1.23
RNF4-210ENST00000508235 PLPPR3Q6T4P5 718 aa22.7■■□□□ 1.22
RNF4-210ENST00000508235 ZMYM3Q14202 1370 aa22.7■■□□□ 1.22
RNF4-210ENST00000508235 PRDM15P57071 1507 aaPredicted RBP22.7■■□□□ 1.22
RNF4-210ENST00000508235 MROH1Q8NDA8 1641 aa22.69■■□□□ 1.22
RNF4-210ENST00000508235 SETD1BQ9UPS6 1966 aaKnown RBP22.67■■□□□ 1.22
RNF4-210ENST00000508235 KANK1Q14678 1352 aa22.67■■□□□ 1.22
RNF4-210ENST00000508235 CEBPAP49715 358 aaPredicted RBP22.67■■□□□ 1.22
RNF4-210ENST00000508235 ABCC3O15438 1527 aa22.64■■□□□ 1.21
RNF4-210ENST00000508235 CEP152O94986 1710 aa22.64■■□□□ 1.21
RNF4-210ENST00000508235 NPATQ14207 1427 aa22.64■■□□□ 1.21
RNF4-210ENST00000508235 GCC2Q8IWJ2 1684 aa22.63■■□□□ 1.21
RNF4-210ENST00000508235 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.63■■□□□ 1.212e-6■■□□□ 11.6
RNF4-210ENST00000508235 PREX1Q8TCU6 1659 aa22.62■■□□□ 1.21
RNF4-210ENST00000508235 CAMSAP1Q5T5Y3 1602 aa22.6■■□□□ 1.21
RNF4-210ENST00000508235 PZPP20742 1482 aa22.6■■□□□ 1.21
RNF4-210ENST00000508235 UNC13BO14795 1591 aa22.6■■□□□ 1.21
RNF4-210ENST00000508235 HFM1A2PYH4 1435 aa22.6■■□□□ 1.21
RNF4-210ENST00000508235 VWDEQ8N2E2 1590 aa22.59■■□□□ 1.21
RNF4-210ENST00000508235 NAIPQ13075 1403 aa22.57■■□□□ 1.2
RNF4-210ENST00000508235 LMTK2Q8IWU2 1503 aa22.57■■□□□ 1.2
RNF4-210ENST00000508235 UHRF1BP1Q6BDS2 1440 aa22.57■■□□□ 1.2
RNF4-210ENST00000508235 ARHGAP31Q2M1Z3 1444 aa22.55■■□□□ 1.2
RNF4-210ENST00000508235 LMTK3Q96Q04 1460 aa22.54■■□□□ 1.2
RNF4-210ENST00000508235 IQGAP3Q86VI3 1631 aa22.51■■□□□ 1.19
RNF4-210ENST00000508235 TET3O43151 1660 aa22.51■■□□□ 1.19
RNF4-210ENST00000508235 MYO3AQ8NEV4 1616 aa22.5■■□□□ 1.19
RNF4-210ENST00000508235 EFCAB6Q5THR3 1501 aa22.5■■□□□ 1.19
RNF4-210ENST00000508235 TNRQ92752 1358 aa22.5■■□□□ 1.19
RNF4-210ENST00000508235 CFAP65Q6ZU64 1925 aaKnown RBP22.49■■□□□ 1.19
RNF4-210ENST00000508235 FBXO31Q5XUX0 539 aaPredicted RBP22.49■■□□□ 1.19
RNF4-210ENST00000508235 SPATA31D1Q6ZQQ2 1576 aa22.49■■□□□ 1.19
RNF4-210ENST00000508235 NUP155O75694 1391 aa22.49■■□□□ 1.19
RNF4-210ENST00000508235 ERVK-7P63135 1459 aa22.47■■□□□ 1.19
RNF4-210ENST00000508235 RPRD2Q5VT52 1461 aaKnown RBP22.47■■□□□ 1.19
RNF4-210ENST00000508235 ZNF142P52746 1687 aaPredicted RBP22.47■■□□□ 1.19
RNF4-210ENST00000508235 ACIN1Q9UKV3 1341 aaKnown RBP22.47■■□□□ 1.19
RNF4-210ENST00000508235 NLRP1Q9C000 1473 aa22.45■■□□□ 1.18
RNF4-210ENST00000508235 CEP170BQ9Y4F5 1589 aaPredicted RBP22.44■■□□□ 1.18
RNF4-210ENST00000508235 A2ML1A8K2U0 1454 aa22.42■■□□□ 1.18
RNF4-210ENST00000508235 SETD5Q9C0A6 1442 aa22.41■■□□□ 1.18
RNF4-210ENST00000508235 TRIM52Q96A61 297 aa22.41■■□□□ 1.18
RNF4-210ENST00000508235 E9PCH4 1651 aa22.4■■□□□ 1.18
RNF4-210ENST00000508235 HSPA2P54652 639 aa22.39■■□□□ 1.17
RNF4-210ENST00000508235 NOS1P29475 1434 aa22.37■■□□□ 1.17
RNF4-210ENST00000508235 UGGT1Q9NYU2 1555 aa22.35■■□□□ 1.17
RNF4-210ENST00000508235 SYNMO15061 1565 aa22.33■■□□□ 1.17
RNF4-210ENST00000508235 SLC52A1Q9NWF4 448 aa22.33■■□□□ 1.17
RNF4-210ENST00000508235 PLA2R1Q13018 1463 aa22.33■■□□□ 1.16
RNF4-210ENST00000508235 THEMISQ8N1K5 641 aaPredicted RBP22.32■■□□□ 1.16
RNF4-210ENST00000508235 RAB3GAP2Q9H2M9 1393 aa22.32■■□□□ 1.16
RNF4-210ENST00000508235 KDM5AP29375 1690 aaKnown RBP22.31■■□□□ 1.16
RNF4-210ENST00000508235 SLC4A1APQ9BWU0 796 aaKnown RBP22.31■■□□□ 1.16
RNF4-210ENST00000508235 SPHKAPQ2M3C7 1700 aa22.3■■□□□ 1.16
RNF4-210ENST00000508235 UBR1Q8IWV7 1749 aa22.29■■□□□ 1.16
RNF4-210ENST00000508235 PIK3C2BO00750 1634 aa22.29■■□□□ 1.16
RNF4-210ENST00000508235 HRCP23327 699 aa22.29■■□□□ 1.16
RNF4-210ENST00000508235 STRCQ7RTU9 1775 aa22.29■■□□□ 1.16
RNF4-210ENST00000508235 STAG3Q9UJ98 1225 aa22.28■■□□□ 1.16
RNF4-210ENST00000508235 IDI1Q13907 227 aa22.27■■□□□ 1.16
RNF4-210ENST00000508235 DMRT2Q9Y5R5 561 aa22.27■■□□□ 1.16
RNF4-210ENST00000508235 TRIM26Q12899 539 aaPredicted RBP22.25■■□□□ 1.15
RNF4-210ENST00000508235 PKD2Q13563 968 aa22.25■■□□□ 1.15
RNF4-210ENST00000508235 PTPRTO14522 1441 aa22.24■■□□□ 1.15
RNF4-210ENST00000508235 POLR1AO95602 1720 aaPredicted RBP22.24■■□□□ 1.15
RNF4-210ENST00000508235 MPHOSPH9Q99550 1183 aa22.24■■□□□ 1.15
RNF4-210ENST00000508235 ADGRB3O60242 1522 aa22.23■■□□□ 1.15
RNF4-210ENST00000508235 TRPM2O94759 1503 aa22.21■■□□□ 1.15
RNF4-210ENST00000508235 ANKLE2Q86XL3 938 aa22.21■■□□□ 1.15
RNF4-210ENST00000508235 SLIT1O75093 1534 aa22.19■■□□□ 1.14
RNF4-210ENST00000508235 TMEM131LA2VDJ0 1609 aa22.18■■□□□ 1.14
RNF4-210ENST00000508235 NCKAP5LQ9HCH0 1330 aa22.18■■□□□ 1.14
RNF4-210ENST00000508235 ARHGAP23Q9P227 1491 aa22.17■■□□□ 1.14
RNF4-210ENST00000508235 MYO5BQ9ULV0 1848 aa22.17■■□□□ 1.14
RNF4-210ENST00000508235 TMEM2Q9UHN6 1383 aa22.16■■□□□ 1.14
RNF4-210ENST00000508235 EID1Q9Y6B2 187 aa22.16■■□□□ 1.14
RNF4-210ENST00000508235 CHGAP10645 457 aaKnown RBP22.15■■□□□ 1.14
RNF4-210ENST00000508235 KIF1BO60333 1816 aa22.15■■□□□ 1.14
RNF4-210ENST00000508235 CLTCL1P53675 1640 aa22.14■■□□□ 1.14
RNF4-210ENST00000508235 HDGFP51858 240 aaKnown RBP22.14■■□□□ 1.13
RNF4-210ENST00000508235 SCAF11Q99590 1463 aaKnown RBP22.14■■□□□ 1.13
RNF4-210ENST00000508235 MED14O60244 1454 aa22.13■■□□□ 1.13
RNF4-210ENST00000508235 NEURL4Q96JN8 1562 aa22.12■■□□□ 1.13
RNF4-210ENST00000508235 TXNDC2Q86VQ3 553 aa22.12■■□□□ 1.13
RNF4-210ENST00000508235 FOXD1Q16676 465 aa22.11■■□□□ 1.13
RNF4-210ENST00000508235 IQGAP1P46940 1657 aa22.11■■□□□ 1.13
RNF4-210ENST00000508235 NPHP4O75161 1426 aaPredicted RBP22.1■■□□□ 1.13
RNF4-210ENST00000508235 CCDC144AA2RUR9 1427 aa22.09■■□□□ 1.13
RNF4-210ENST00000508235 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.07■■□□□ 1.121e-6■■■□□ 16
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms