RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 VPS8Q8N3P4 1428 aa12.66□□□□□ -0.38
SCN1A-207ENST00000507401 RIMS1Q86UR5 1692 aaKnown RBP12.66□□□□□ -0.38
SCN1A-207ENST00000507401 SPAG9O60271 1321 aaKnown RBP12.65□□□□□ -0.38
SCN1A-207ENST00000507401 PRR29P0C7W0 189 aa12.65□□□□□ -0.38
SCN1A-207ENST00000507401 RSPH4AQ5TD94 716 aa12.65□□□□□ -0.38
SCN1A-207ENST00000507401 AGLP35573 1532 aa12.65□□□□□ -0.38
SCN1A-207ENST00000507401 KIDINS220Q9ULH0 1771 aa12.64□□□□□ -0.39
SCN1A-207ENST00000507401 FER1L4A9Z1Z3 1794 aa12.64□□□□□ -0.39
SCN1A-207ENST00000507401 ABCA6Q8N139 1617 aa12.63□□□□□ -0.39
SCN1A-207ENST00000507401 MAP3K1Q13233 1512 aa12.62□□□□□ -0.39
SCN1A-207ENST00000507401 SYCP2Q9BX26 1530 aa12.62□□□□□ -0.39
SCN1A-207ENST00000507401 TIAM1Q13009 1591 aa12.62□□□□□ -0.39
SCN1A-207ENST00000507401 ESF1Q9H501 851 aaKnown RBP12.61□□□□□ -0.39
SCN1A-207ENST00000507401 SUPT6HQ7KZ85 1726 aaKnown RBP12.61□□□□□ -0.39
SCN1A-207ENST00000507401 ZNF644Q9H582 1327 aaPredicted RBP12.61□□□□□ -0.39
SCN1A-207ENST00000507401 NCOA2Q15596 1464 aa12.6□□□□□ -0.39
SCN1A-207ENST00000507401 LMTK3Q96Q04 1460 aa12.6□□□□□ -0.39
SCN1A-207ENST00000507401 MBD5Q9P267 1494 aa12.6□□□□□ -0.39
SCN1A-207ENST00000507401 CHADLQ6NUI6 762 aa12.6□□□□□ -0.39
SCN1A-207ENST00000507401 SETD1BQ9UPS6 1966 aaKnown RBP12.6□□□□□ -0.39
SCN1A-207ENST00000507401 LRRC9Q6ZRR7 1453 aa12.59□□□□□ -0.39
SCN1A-207ENST00000507401 RTEL1-TNFRSF6BF6WH68 1400 aa12.59□□□□□ -0.39
SCN1A-207ENST00000507401 ATP7AQ04656 1500 aa12.58□□□□□ -0.4
SCN1A-207ENST00000507401 CEBPAP49715 358 aaPredicted RBP12.58□□□□□ -0.4
SCN1A-207ENST00000507401 INO80Q9ULG1 1556 aaPredicted RBP12.57□□□□□ -0.4
SCN1A-207ENST00000507401 CNTLNQ9NXG0 1405 aa12.57□□□□□ -0.4
SCN1A-207ENST00000507401 A2MP01023 1474 aa12.57□□□□□ -0.4
SCN1A-207ENST00000507401 KANK4Q5T7N3 995 aaPredicted RBP12.56□□□□□ -0.4
SCN1A-207ENST00000507401 TSPY4P0CV99 314 aa12.55□□□□□ -0.4
SCN1A-207ENST00000507401 TSPY10P0CW01 314 aa12.55□□□□□ -0.4
SCN1A-207ENST00000507401 STAG3Q9UJ98 1225 aa12.55□□□□□ -0.4
SCN1A-207ENST00000507401 HSPA2P54652 639 aa12.54□□□□□ -0.4
SCN1A-207ENST00000507401 PLXNC1O60486 1568 aa12.54□□□□□ -0.4
SCN1A-207ENST00000507401 ADGBQ8N7X0 1667 aa12.54□□□□□ -0.4
SCN1A-207ENST00000507401 DHX29Q7Z478 1369 aaKnown RBP12.54□□□□□ -0.4
SCN1A-207ENST00000507401 EVX2Q03828 476 aa12.53□□□□□ -0.4
SCN1A-207ENST00000507401 PREX1Q8TCU6 1659 aa12.53□□□□□ -0.4
SCN1A-207ENST00000507401 MIA2Q96PC5 1412 aa12.53□□□□□ -0.4
SCN1A-207ENST00000507401 CAMSAP2Q08AD1 1489 aa12.53□□□□□ -0.4
SCN1A-207ENST00000507401 CCDC141Q6ZP82 1450 aa12.53□□□□□ -0.4
SCN1A-207ENST00000507401 HAX1O00165 279 aa12.52□□□□□ -0.41
SCN1A-207ENST00000507401 ZMYM3Q14202 1370 aa12.52□□□□□ -0.41
SCN1A-207ENST00000507401 ARHGEF5Q12774 1597 aa12.52□□□□□ -0.41
SCN1A-207ENST00000507401 C3P01024 1663 aa12.51□□□□□ -0.41
SCN1A-207ENST00000507401 GGT6Q6P531 493 aa12.51□□□□□ -0.41
SCN1A-207ENST00000507401 ILDR1Q86SU0 546 aaPredicted RBP12.5□□□□□ -0.41
SCN1A-207ENST00000507401 CREBZFQ9NS37 354 aa12.5□□□□□ -0.41
SCN1A-207ENST00000507401 MYOM3Q5VTT5 1437 aa12.5□□□□□ -0.41
SCN1A-207ENST00000507401 UHRF1BP1Q6BDS2 1440 aa12.5□□□□□ -0.41
SCN1A-207ENST00000507401 MROH2AA6NES4 1674 aa12.5□□□□□ -0.41
SCN1A-207ENST00000507401 NPATQ14207 1427 aa12.49□□□□□ -0.41
SCN1A-207ENST00000507401 C19orf67A6NJJ6 358 aa12.48□□□□□ -0.41
SCN1A-207ENST00000507401 SP7Q8TDD2 431 aaPredicted RBP12.48□□□□□ -0.41
SCN1A-207ENST00000507401 KIF3BO15066 747 aa12.47□□□□□ -0.41
SCN1A-207ENST00000507401 PELP1Q8IZL8 1130 aaKnown RBP12.47□□□□□ -0.41
SCN1A-207ENST00000507401 FKBP8Q14318 412 aa12.46□□□□□ -0.41
SCN1A-207ENST00000507401 MAST1Q9Y2H9 1570 aa12.45□□□□□ -0.42
SCN1A-207ENST00000507401 FARP1Q9Y4F1 1045 aaPredicted RBP12.45□□□□□ -0.42
SCN1A-207ENST00000507401 CLTCQ00610 1675 aaKnown RBP12.45□□□□□ -0.42
SCN1A-207ENST00000507401 FAM135AQ9P2D6 1515 aa12.44□□□□□ -0.42
SCN1A-207ENST00000507401 PTPRKQ15262 1439 aa12.44□□□□□ -0.42
SCN1A-207ENST00000507401 WASHC2CQ9Y4E1 1318 aa12.43□□□□□ -0.42
SCN1A-207ENST00000507401 FBXO41Q8TF61 875 aa12.43□□□□□ -0.42
SCN1A-207ENST00000507401 STRCQ7RTU9 1775 aa12.42□□□□□ -0.42
SCN1A-207ENST00000507401 PTPRTO14522 1441 aa12.41□□□□□ -0.42
SCN1A-207ENST00000507401 ABCC5O15440 1437 aa12.39□□□□□ -0.43
SCN1A-207ENST00000507401 FGD6Q6ZV73 1430 aa12.39□□□□□ -0.43
SCN1A-207ENST00000507401 PTPN23Q9H3S7 1636 aa12.39□□□□□ -0.43
SCN1A-207ENST00000507401 TCOF1Q13428 1488 aaKnown RBP12.39□□□□□ -0.43
SCN1A-207ENST00000507401 KDM5DQ9BY66 1539 aa12.38□□□□□ -0.43
SCN1A-207ENST00000507401 PKD2Q13563 968 aa12.38□□□□□ -0.43
SCN1A-207ENST00000507401 CERKQ8TCT0 537 aa12.38□□□□□ -0.43
SCN1A-207ENST00000507401 SHANK2Q9UPX8 1470 aa12.38□□□□□ -0.43
SCN1A-207ENST00000507401 NCOA1Q15788 1441 aa12.37□□□□□ -0.43
SCN1A-207ENST00000507401 DUOX2Q9NRD8 1548 aa12.37□□□□□ -0.43
SCN1A-207ENST00000507401 EIF2AK4Q9P2K8 1649 aaKnown RBP12.37□□□□□ -0.43
SCN1A-207ENST00000507401 MNX1P50219 401 aaPredicted RBP12.37□□□□□ -0.43
SCN1A-207ENST00000507401 PZPP20742 1482 aa12.37□□□□□ -0.43
SCN1A-207ENST00000507401 FBXO31Q5XUX0 539 aaPredicted RBP12.36□□□□□ -0.43
SCN1A-207ENST00000507401 RNF17Q9BXT8 1623 aaKnown RBP12.36□□□□□ -0.43
SCN1A-207ENST00000507401 DAPK1P53355 1430 aa12.36□□□□□ -0.43
SCN1A-207ENST00000507401 PLA2R1Q13018 1463 aa12.35□□□□□ -0.43
SCN1A-207ENST00000507401 KIF15Q9NS87 1388 aa12.35□□□□□ -0.43
SCN1A-207ENST00000507401 RRP7BPQ9NSQ0 103 aa12.35□□□□□ -0.43
SCN1A-207ENST00000507401 CAMSAP1Q5T5Y3 1602 aa12.35□□□□□ -0.43
SCN1A-207ENST00000507401 ZNF142P52746 1687 aaPredicted RBP12.35□□□□□ -0.43
SCN1A-207ENST00000507401 CEP170BQ9Y4F5 1589 aaPredicted RBP12.35□□□□□ -0.43
SCN1A-207ENST00000507401 A2ML1A8K2U0 1454 aa12.34□□□□□ -0.43
SCN1A-207ENST00000507401 DNMT1P26358 1616 aaKnown RBP12.34□□□□□ -0.43
SCN1A-207ENST00000507401 MYO3AQ8NEV4 1616 aa12.34□□□□□ -0.43
SCN1A-207ENST00000507401 TNRQ92752 1358 aa12.34□□□□□ -0.43
SCN1A-207ENST00000507401 ERBINQ96RT1 1412 aa12.34□□□□□ -0.43
SCN1A-207ENST00000507401 ANKRD30AQ9BXX3 1397 aa12.33□□□□□ -0.44
SCN1A-207ENST00000507401 THEMISQ8N1K5 641 aaPredicted RBP12.33□□□□□ -0.44
SCN1A-207ENST00000507401 NCKAP5LQ9HCH0 1330 aa12.33□□□□□ -0.44
SCN1A-207ENST00000507401 CROCC2H7BZ55 1655 aa12.32□□□□□ -0.44
SCN1A-207ENST00000507401 ZC3H13Q5T200 1668 aaKnown RBP12.32□□□□□ -0.44
SCN1A-207ENST00000507401 ABCC3O15438 1527 aa12.32□□□□□ -0.44
SCN1A-207ENST00000507401 NLRP1Q9C000 1473 aa12.32□□□□□ -0.44
SCN1A-207ENST00000507401 CHIC2Q9UKJ5 165 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms