RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 RNF17Q9BXT8 1623 aaKnown RBP21.18■□□□□ 0.98
RNF4-208ENST00000507247 MROH1Q8NDA8 1641 aa21.18■□□□□ 0.98
RNF4-208ENST00000507247 KIF3BO15066 747 aa21.15■□□□□ 0.98
RNF4-208ENST00000507247 HRCP23327 699 aa21.15■□□□□ 0.98
RNF4-208ENST00000507247 PRDM15P57071 1507 aaPredicted RBP21.14■□□□□ 0.97
RNF4-208ENST00000507247 KDM5DQ9BY66 1539 aa21.12■□□□□ 0.97
RNF4-208ENST00000507247 IQGAP3Q86VI3 1631 aa21.1■□□□□ 0.97
RNF4-208ENST00000507247 VWDEQ8N2E2 1590 aa21.1■□□□□ 0.97
RNF4-208ENST00000507247 CEP152O94986 1710 aa21.09■□□□□ 0.97
RNF4-208ENST00000507247 PZPP20742 1482 aa21.08■□□□□ 0.97
RNF4-208ENST00000507247 TRIM52Q96A61 297 aa21.08■□□□□ 0.97
RNF4-208ENST00000507247 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.07■□□□□ 0.969e-7■■□□□ 12.4
RNF4-208ENST00000507247 NUP155O75694 1391 aa21.07■□□□□ 0.96
RNF4-208ENST00000507247 FAM135AQ9P2D6 1515 aa21.06■□□□□ 0.96
RNF4-208ENST00000507247 GGT6Q6P531 493 aa21.06■□□□□ 0.96
RNF4-208ENST00000507247 ARID4BQ4LE39 1312 aaPredicted RBP21.05■□□□□ 0.96
RNF4-208ENST00000507247 ACIN1Q9UKV3 1341 aaKnown RBP21.04■□□□□ 0.96
RNF4-208ENST00000507247 ZC3H13Q5T200 1668 aaKnown RBP21.03■□□□□ 0.96
RNF4-208ENST00000507247 MLECQ14165 292 aa21.03■□□□□ 0.96
RNF4-208ENST00000507247 DHX57Q6P158 1386 aaKnown RBP21.02■□□□□ 0.96
RNF4-208ENST00000507247 ABCC3O15438 1527 aa21.02■□□□□ 0.96
RNF4-208ENST00000507247 TET3O43151 1660 aa21.02■□□□□ 0.95
RNF4-208ENST00000507247 KANK1Q14678 1352 aa21.01■□□□□ 0.95
RNF4-208ENST00000507247 LMTK2Q8IWU2 1503 aa21■□□□□ 0.95
RNF4-208ENST00000507247 CLTCQ00610 1675 aaKnown RBP21■□□□□ 0.95
RNF4-208ENST00000507247 CAMSAP1Q5T5Y3 1602 aa21■□□□□ 0.95
RNF4-208ENST00000507247 FER1L4A9Z1Z3 1794 aa20.98■□□□□ 0.95
RNF4-208ENST00000507247 MPHOSPH9Q99550 1183 aa20.98■□□□□ 0.95
RNF4-208ENST00000507247 E9PCH4 1651 aa20.98■□□□□ 0.95
RNF4-208ENST00000507247 SLC4A1APQ9BWU0 796 aaKnown RBP20.97■□□□□ 0.95
RNF4-208ENST00000507247 ADAMTSL3P82987 1691 aa20.96■□□□□ 0.95
RNF4-208ENST00000507247 EFCAB6Q5THR3 1501 aa20.96■□□□□ 0.95
RNF4-208ENST00000507247 PPP6R1Q9UPN7 881 aa20.95■□□□□ 0.94
RNF4-208ENST00000507247 WASHC2CQ9Y4E1 1318 aa20.95■□□□□ 0.94
RNF4-208ENST00000507247 MADDQ8WXG6 1647 aa20.94■□□□□ 0.94
RNF4-208ENST00000507247 MROH2AA6NES4 1674 aa20.93■□□□□ 0.94
RNF4-208ENST00000507247 PKD2Q13563 968 aa20.92■□□□□ 0.94
RNF4-208ENST00000507247 FOXD1Q16676 465 aa20.91■□□□□ 0.94
RNF4-208ENST00000507247 CFAP65Q6ZU64 1925 aaKnown RBP20.91■□□□□ 0.94
RNF4-208ENST00000507247 RIMS1Q86UR5 1692 aaKnown RBP20.91■□□□□ 0.94
RNF4-208ENST00000507247 NPATQ14207 1427 aa20.89■□□□□ 0.94
RNF4-208ENST00000507247 CNTLNQ9NXG0 1405 aa20.88■□□□□ 0.93
RNF4-208ENST00000507247 ARHGAP31Q2M1Z3 1444 aa20.87■□□□□ 0.93
RNF4-208ENST00000507247 SPHKAPQ2M3C7 1700 aa20.87■□□□□ 0.93
RNF4-208ENST00000507247 RPRD2Q5VT52 1461 aaKnown RBP20.87■□□□□ 0.93
RNF4-208ENST00000507247 C3P01024 1663 aa20.86■□□□□ 0.93
RNF4-208ENST00000507247 ESF1Q9H501 851 aaKnown RBP20.86■□□□□ 0.93
RNF4-208ENST00000507247 PREX1Q8TCU6 1659 aa20.86■□□□□ 0.93
RNF4-208ENST00000507247 CCER1Q8TC90 406 aaPredicted RBP20.85■□□□□ 0.93
RNF4-208ENST00000507247 PTPRMP28827 1452 aa20.85■□□□□ 0.93
RNF4-208ENST00000507247 ZMYM3Q14202 1370 aa20.85■□□□□ 0.93
RNF4-208ENST00000507247 PLA2R1Q13018 1463 aa20.83■□□□□ 0.93
RNF4-208ENST00000507247 ANKRD30BQ9BXX2 1392 aa20.83■□□□□ 0.92
RNF4-208ENST00000507247 PTPRTO14522 1441 aa20.81■□□□□ 0.92
RNF4-208ENST00000507247 TRPM2O94759 1503 aa20.8■□□□□ 0.92
RNF4-208ENST00000507247 ERVK-7P63135 1459 aa20.8■□□□□ 0.92
RNF4-208ENST00000507247 SYNMO15061 1565 aa20.8■□□□□ 0.92
RNF4-208ENST00000507247 SPATA31D1Q6ZQQ2 1576 aa20.8■□□□□ 0.92
RNF4-208ENST00000507247 NOS1P29475 1434 aa20.79■□□□□ 0.92
RNF4-208ENST00000507247 FBXO31Q5XUX0 539 aaPredicted RBP20.78■□□□□ 0.92
RNF4-208ENST00000507247 CLTCL1P53675 1640 aa20.78■□□□□ 0.92
RNF4-208ENST00000507247 CEBPAP49715 358 aaPredicted RBP20.77■□□□□ 0.92
RNF4-208ENST00000507247 CLSPNQ9HAW4 1339 aa20.77■□□□□ 0.91
RNF4-208ENST00000507247 UGGT1Q9NYU2 1555 aa20.76■□□□□ 0.91
RNF4-208ENST00000507247 PIK3C2BO00750 1634 aa20.75■□□□□ 0.91
RNF4-208ENST00000507247 SIN3AQ96ST3 1273 aa20.74■□□□□ 0.91
RNF4-208ENST00000507247 PLPPR3Q6T4P5 718 aa20.72■□□□□ 0.91
RNF4-208ENST00000507247 CCDC144AA2RUR9 1427 aa20.71■□□□□ 0.91
RNF4-208ENST00000507247 KIF1BO60333 1816 aa20.69■□□□□ 0.9
RNF4-208ENST00000507247 TNRQ92752 1358 aa20.69■□□□□ 0.9
RNF4-208ENST00000507247 NEUROD1Q13562 356 aa20.67■□□□□ 0.9
RNF4-208ENST00000507247 MYO5BQ9ULV0 1848 aa20.67■□□□□ 0.9
RNF4-208ENST00000507247 MYO3AQ8NEV4 1616 aa20.66■□□□□ 0.9
RNF4-208ENST00000507247 LMTK3Q96Q04 1460 aa20.64■□□□□ 0.89
RNF4-208ENST00000507247 IDI1Q13907 227 aa20.64■□□□□ 0.89
RNF4-208ENST00000507247 ADGRB3O60242 1522 aa20.63■□□□□ 0.89
RNF4-208ENST00000507247 SLC52A1Q9NWF4 448 aa20.63■□□□□ 0.89
RNF4-208ENST00000507247 TMEM131LA2VDJ0 1609 aa20.63■□□□□ 0.89
RNF4-208ENST00000507247 SETD1BQ9UPS6 1966 aaKnown RBP20.63■□□□□ 0.89
RNF4-208ENST00000507247 SPATA31E1Q6ZUB1 1445 aa20.62■□□□□ 0.89
RNF4-208ENST00000507247 NEURL4Q96JN8 1562 aa20.61■□□□□ 0.89
RNF4-208ENST00000507247 ILDR1Q86SU0 546 aaPredicted RBP20.61■□□□□ 0.89
RNF4-208ENST00000507247 NLRP1Q9C000 1473 aa20.61■□□□□ 0.89
RNF4-208ENST00000507247 UBR1Q8IWV7 1749 aa20.6■□□□□ 0.89
RNF4-208ENST00000507247 ZNF142P52746 1687 aaPredicted RBP20.6■□□□□ 0.89
RNF4-208ENST00000507247 KDM5AP29375 1690 aaKnown RBP20.59■□□□□ 0.89
RNF4-208ENST00000507247 HSPA2P54652 639 aa20.57■□□□□ 0.88
RNF4-208ENST00000507247 CEP170BQ9Y4F5 1589 aaPredicted RBP20.57■□□□□ 0.88
RNF4-208ENST00000507247 IFT172Q9UG01 1749 aa20.56■□□□□ 0.88
RNF4-208ENST00000507247 CHGAP10645 457 aaKnown RBP20.56■□□□□ 0.88
RNF4-208ENST00000507247 A2ML1A8K2U0 1454 aa20.56■□□□□ 0.88
RNF4-208ENST00000507247 TONSLQ96HA7 1378 aa20.55■□□□□ 0.88
RNF4-208ENST00000507247 RGL3Q3MIN7 710 aa20.54■□□□□ 0.88
RNF4-208ENST00000507247 PPLO60437 1756 aa20.54■□□□□ 0.88
RNF4-208ENST00000507247 L3MBTL2Q969R5 705 aa20.52■□□□□ 0.88
RNF4-208ENST00000507247 NEXMIFQ5QGS0 1516 aa20.51■□□□□ 0.87
RNF4-208ENST00000507247 UHRF1BP1Q6BDS2 1440 aa20.51■□□□□ 0.87
RNF4-208ENST00000507247 STAG3Q9UJ98 1225 aa20.5■□□□□ 0.87
RNF4-208ENST00000507247 ZNF326Q5BKZ1 582 aaKnown RBP20.48■□□□□ 0.87
RNF4-208ENST00000507247 TIMELESSQ9UNS1 1208 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms