RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 WASHC2CQ9Y4E1 1318 aa22.02■■□□□ 1.12
HOXC9-202ENST00000504557 SHANK2Q9UPX8 1470 aa22.02■■□□□ 1.12
HOXC9-202ENST00000504557 KDM5DQ9BY66 1539 aa22.01■■□□□ 1.11
HOXC9-202ENST00000504557 DUOX2Q9NRD8 1548 aa22.01■■□□□ 1.11
HOXC9-202ENST00000504557 KIF15Q9NS87 1388 aa22■■□□□ 1.11
HOXC9-202ENST00000504557 EIF2AK4Q9P2K8 1649 aaKnown RBP22■■□□□ 1.11
HOXC9-202ENST00000504557 PPP6R1Q9UPN7 881 aa22■■□□□ 1.11
HOXC9-202ENST00000504557 CEP152O94986 1710 aa22■■□□□ 1.11
HOXC9-202ENST00000504557 MYO3AQ8NEV4 1616 aa21.99■■□□□ 1.11
HOXC9-202ENST00000504557 RNF17Q9BXT8 1623 aaKnown RBP21.99■■□□□ 1.11
HOXC9-202ENST00000504557 NPATQ14207 1427 aa21.98■■□□□ 1.11
HOXC9-202ENST00000504557 STRCQ7RTU9 1775 aa21.98■■□□□ 1.11
HOXC9-202ENST00000504557 PTPRKQ15262 1439 aa21.97■■□□□ 1.11
HOXC9-202ENST00000504557 FBXO31Q5XUX0 539 aaPredicted RBP21.95■■□□□ 1.1
HOXC9-202ENST00000504557 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.94■■□□□ 1.1
HOXC9-202ENST00000504557 ANKRD30AQ9BXX3 1397 aa21.94■■□□□ 1.1
HOXC9-202ENST00000504557 ZC3H13Q5T200 1668 aaKnown RBP21.93■■□□□ 1.1
HOXC9-202ENST00000504557 MROH1Q8NDA8 1641 aa21.93■■□□□ 1.1
HOXC9-202ENST00000504557 ITGAEP38570 1179 aa21.92■■□□□ 1.1
HOXC9-202ENST00000504557 ZNF142P52746 1687 aaPredicted RBP21.91■■□□□ 1.1
HOXC9-202ENST00000504557 CAMSAP1Q5T5Y3 1602 aa21.91■■□□□ 1.1
HOXC9-202ENST00000504557 CEP170BQ9Y4F5 1589 aaPredicted RBP21.91■■□□□ 1.1
HOXC9-202ENST00000504557 ABCC3O15438 1527 aa21.91■■□□□ 1.1
HOXC9-202ENST00000504557 FAM135AQ9P2D6 1515 aa21.91■■□□□ 1.1
HOXC9-202ENST00000504557 ERBINQ96RT1 1412 aa21.9■■□□□ 1.1
HOXC9-202ENST00000504557 PZPP20742 1482 aa21.9■■□□□ 1.1
HOXC9-202ENST00000504557 TNRQ92752 1358 aa21.88■■□□□ 1.09
HOXC9-202ENST00000504557 NCOA1Q15788 1441 aa21.88■■□□□ 1.09
HOXC9-202ENST00000504557 ILDR1Q86SU0 546 aaPredicted RBP21.85■■□□□ 1.09
HOXC9-202ENST00000504557 PRDM15P57071 1507 aaPredicted RBP21.85■■□□□ 1.09
HOXC9-202ENST00000504557 DEPDC5O75140 1603 aa21.84■■□□□ 1.09
HOXC9-202ENST00000504557 ADGRL2O95490 1459 aa21.84■■□□□ 1.09
HOXC9-202ENST00000504557 NCKAP5LQ9HCH0 1330 aa21.83■■□□□ 1.09
HOXC9-202ENST00000504557 A2ML1A8K2U0 1454 aa21.83■■□□□ 1.08
HOXC9-202ENST00000504557 DMRT2Q9Y5R5 561 aa21.82■■□□□ 1.08
HOXC9-202ENST00000504557 KANK1Q14678 1352 aa21.82■■□□□ 1.08
HOXC9-202ENST00000504557 ERVK-7P63135 1459 aa21.78■■□□□ 1.08
HOXC9-202ENST00000504557 ANKRD50Q9ULJ7 1429 aa21.78■■□□□ 1.08
HOXC9-202ENST00000504557 SPATA31D1Q6ZQQ2 1576 aa21.77■■□□□ 1.08
HOXC9-202ENST00000504557 POLR1AO95602 1720 aaPredicted RBP21.77■■□□□ 1.08
HOXC9-202ENST00000504557 UGGT1Q9NYU2 1555 aa21.75■■□□□ 1.07
HOXC9-202ENST00000504557 PTPRTO14522 1441 aa21.74■■□□□ 1.07
HOXC9-202ENST00000504557 PLA2R1Q13018 1463 aa21.74■■□□□ 1.07
HOXC9-202ENST00000504557 NLRP1Q9C000 1473 aa21.74■■□□□ 1.07
HOXC9-202ENST00000504557 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.73■■□□□ 1.072e-6■□□□□ 11.3
HOXC9-202ENST00000504557 VWDEQ8N2E2 1590 aa21.71■■□□□ 1.07
HOXC9-202ENST00000504557 CERKQ8TCT0 537 aa21.71■■□□□ 1.07
HOXC9-202ENST00000504557 PKD2Q13563 968 aa21.7■■□□□ 1.06
HOXC9-202ENST00000504557 ROCK1Q13464 1354 aa21.69■■□□□ 1.06
HOXC9-202ENST00000504557 UBR1Q8IWV7 1749 aa21.69■■□□□ 1.06
HOXC9-202ENST00000504557 THEMISQ8N1K5 641 aaPredicted RBP21.68■■□□□ 1.06
HOXC9-202ENST00000504557 ARHGAP31Q2M1Z3 1444 aa21.68■■□□□ 1.06
HOXC9-202ENST00000504557 RRBP1Q9P2E9 1410 aaKnown RBP21.68■■□□□ 1.06
HOXC9-202ENST00000504557 EFCAB6Q5THR3 1501 aa21.68■■□□□ 1.06
HOXC9-202ENST00000504557 UNC13BO14795 1591 aa21.67■■□□□ 1.06
HOXC9-202ENST00000504557 LMTK2Q8IWU2 1503 aa21.67■■□□□ 1.06
HOXC9-202ENST00000504557 FBXO41Q8TF61 875 aa21.67■■□□□ 1.06
HOXC9-202ENST00000504557 PIK3C2BO00750 1634 aa21.66■■□□□ 1.06
HOXC9-202ENST00000504557 NEURL4Q96JN8 1562 aa21.65■■□□□ 1.06
HOXC9-202ENST00000504557 TET3O43151 1660 aa21.65■■□□□ 1.06
HOXC9-202ENST00000504557 GCC2Q8IWJ2 1684 aa21.65■■□□□ 1.06
HOXC9-202ENST00000504557 ZNF335Q9H4Z2 1342 aaPredicted RBP21.64■■□□□ 1.05
HOXC9-202ENST00000504557 ANKLE2Q86XL3 938 aa21.64■■□□□ 1.05
HOXC9-202ENST00000504557 STAG3Q9UJ98 1225 aa21.64■■□□□ 1.05
HOXC9-202ENST00000504557 SYNMO15061 1565 aa21.62■■□□□ 1.05
HOXC9-202ENST00000504557 LTBP4Q8N2S1 1624 aa21.61■■□□□ 1.05
HOXC9-202ENST00000504557 E9PCH4 1651 aa21.6■■□□□ 1.05
HOXC9-202ENST00000504557 IQGAP1P46940 1657 aa21.6■■□□□ 1.05
HOXC9-202ENST00000504557 MYO5BQ9ULV0 1848 aa21.59■■□□□ 1.05
HOXC9-202ENST00000504557 IQGAP3Q86VI3 1631 aa21.59■■□□□ 1.05
HOXC9-202ENST00000504557 NUP155O75694 1391 aa21.59■■□□□ 1.05
HOXC9-202ENST00000504557 NPHP4O75161 1426 aaPredicted RBP21.57■■□□□ 1.04
HOXC9-202ENST00000504557 IDI1Q13907 227 aa21.57■■□□□ 1.04
HOXC9-202ENST00000504557 NOS1P29475 1434 aa21.55■■□□□ 1.04
HOXC9-202ENST00000504557 RPRD2Q5VT52 1461 aaKnown RBP21.54■■□□□ 1.04
HOXC9-202ENST00000504557 TXNDC2Q86VQ3 553 aa21.53■■□□□ 1.04
HOXC9-202ENST00000504557 SCAF11Q99590 1463 aaKnown RBP21.52■■□□□ 1.04
HOXC9-202ENST00000504557 SENP3Q9H4L4 574 aaPredicted RBP21.52■■□□□ 1.04
HOXC9-202ENST00000504557 ADGRB3O60242 1522 aa21.51■■□□□ 1.03
HOXC9-202ENST00000504557 CHGAP10645 457 aaKnown RBP21.51■■□□□ 1.03
HOXC9-202ENST00000504557 EID1Q9Y6B2 187 aa21.51■■□□□ 1.03
HOXC9-202ENST00000504557 NAIPQ13075 1403 aa21.51■■□□□ 1.03
HOXC9-202ENST00000504557 MED14O60244 1454 aa21.51■■□□□ 1.03
HOXC9-202ENST00000504557 KDM5AP29375 1690 aaKnown RBP21.5■■□□□ 1.03
HOXC9-202ENST00000504557 LTKP29376 864 aa21.5■■□□□ 1.03
HOXC9-202ENST00000504557 SLIT1O75093 1534 aa21.5■■□□□ 1.03
HOXC9-202ENST00000504557 ARHGAP23Q9P227 1491 aa21.49■■□□□ 1.03
HOXC9-202ENST00000504557 TRIM52Q96A61 297 aa21.48■■□□□ 1.03
HOXC9-202ENST00000504557 SLC52A1Q9NWF4 448 aa21.48■■□□□ 1.03
HOXC9-202ENST00000504557 TMEM2Q9UHN6 1383 aa21.48■■□□□ 1.03
HOXC9-202ENST00000504557 SPHKAPQ2M3C7 1700 aa21.46■■□□□ 1.03
HOXC9-202ENST00000504557 STRCP1A6NGW2 1772 aa21.46■■□□□ 1.03
HOXC9-202ENST00000504557 BCANQ96GW7 911 aa21.45■■□□□ 1.02
HOXC9-202ENST00000504557 HFM1A2PYH4 1435 aa21.44■■□□□ 1.02
HOXC9-202ENST00000504557 TMEM131LA2VDJ0 1609 aa21.44■■□□□ 1.02
HOXC9-202ENST00000504557 CPS1P31327 1500 aa21.41■■□□□ 1.02
HOXC9-202ENST00000504557 IQSEC2Q5JU85 1478 aa21.41■■□□□ 1.02
HOXC9-202ENST00000504557 NUTM2DQ5VT03 806 aaPredicted RBP21.41■■□□□ 1.02
HOXC9-202ENST00000504557 UBAP1LF5GYI3 381 aa21.4■■□□□ 1.02
HOXC9-202ENST00000504557 PPP1R15AO75807 674 aaPredicted RBP21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms