RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 PRDM15P57071 1507 aaPredicted RBP20.37■□□□□ 0.85
CPNE1-227ENST00000498056 PCGF6Q9BYE7 350 aa20.37■□□□□ 0.85
CPNE1-227ENST00000498056 CLTCQ00610 1675 aaKnown RBP20.35■□□□□ 0.85
CPNE1-227ENST00000498056 SETD5Q9C0A6 1442 aa20.35■□□□□ 0.85
CPNE1-227ENST00000498056 ARID4BQ4LE39 1312 aaPredicted RBP20.33■□□□□ 0.85
CPNE1-227ENST00000498056 IQGAP3Q86VI3 1631 aa20.33■□□□□ 0.84
CPNE1-227ENST00000498056 RAB3GAP2Q9H2M9 1393 aa20.33■□□□□ 0.84
CPNE1-227ENST00000498056 RIMS1Q86UR5 1692 aaKnown RBP20.32■□□□□ 0.84
CPNE1-227ENST00000498056 MADDQ8WXG6 1647 aa20.31■□□□□ 0.84
CPNE1-227ENST00000498056 CAMSAP1Q5T5Y3 1602 aa20.31■□□□□ 0.84
CPNE1-227ENST00000498056 KIF3BO15066 747 aa20.3■□□□□ 0.84
CPNE1-227ENST00000498056 KDM5DQ9BY66 1539 aa20.3■□□□□ 0.84
CPNE1-227ENST00000498056 MROH2AA6NES4 1674 aa20.28■□□□□ 0.84
CPNE1-227ENST00000498056 TET3O43151 1660 aa20.28■□□□□ 0.84
CPNE1-227ENST00000498056 ADAMTSL3P82987 1691 aa20.28■□□□□ 0.84
CPNE1-227ENST00000498056 FAM135AQ9P2D6 1515 aa20.27■□□□□ 0.83
CPNE1-227ENST00000498056 VWDEQ8N2E2 1590 aa20.26■□□□□ 0.83
CPNE1-227ENST00000498056 MLECQ14165 292 aa20.25■□□□□ 0.83
CPNE1-227ENST00000498056 ABCC3O15438 1527 aa20.25■□□□□ 0.83
CPNE1-227ENST00000498056 CFAP65Q6ZU64 1925 aaKnown RBP20.24■□□□□ 0.83
CPNE1-227ENST00000498056 GGT6Q6P531 493 aa20.23■□□□□ 0.83
CPNE1-227ENST00000498056 KANK1Q14678 1352 aa20.22■□□□□ 0.83
CPNE1-227ENST00000498056 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.22■□□□□ 0.83
CPNE1-227ENST00000498056 E9PCH4 1651 aa20.22■□□□□ 0.83
CPNE1-227ENST00000498056 EFCAB6Q5THR3 1501 aa20.22■□□□□ 0.83
CPNE1-227ENST00000498056 C3P01024 1663 aa20.21■□□□□ 0.83
CPNE1-227ENST00000498056 PZPP20742 1482 aa20.19■□□□□ 0.82
CPNE1-227ENST00000498056 TRIM52Q96A61 297 aa20.19■□□□□ 0.82
CPNE1-227ENST00000498056 NUP155O75694 1391 aa20.19■□□□□ 0.82
CPNE1-227ENST00000498056 SPHKAPQ2M3C7 1700 aa20.19■□□□□ 0.82
CPNE1-227ENST00000498056 LMTK2Q8IWU2 1503 aa20.18■□□□□ 0.82
CPNE1-227ENST00000498056 PREX1Q8TCU6 1659 aa20.17■□□□□ 0.82
CPNE1-227ENST00000498056 CNTLNQ9NXG0 1405 aa20.15■□□□□ 0.82
CPNE1-227ENST00000498056 WASHC2CQ9Y4E1 1318 aa20.13■□□□□ 0.81
CPNE1-227ENST00000498056 ESF1Q9H501 851 aaKnown RBP20.13■□□□□ 0.81
CPNE1-227ENST00000498056 ACIN1Q9UKV3 1341 aaKnown RBP20.1■□□□□ 0.81
CPNE1-227ENST00000498056 RPRD2Q5VT52 1461 aaKnown RBP20.07■□□□□ 0.8
CPNE1-227ENST00000498056 HRCP23327 699 aa20.07■□□□□ 0.8
CPNE1-227ENST00000498056 PPP6R1Q9UPN7 881 aa20.07■□□□□ 0.8
CPNE1-227ENST00000498056 NPATQ14207 1427 aa20.07■□□□□ 0.8
CPNE1-227ENST00000498056 SLC4A1APQ9BWU0 796 aaKnown RBP20.06■□□□□ 0.8
CPNE1-227ENST00000498056 MYO3AQ8NEV4 1616 aa20.05■□□□□ 0.8
CPNE1-227ENST00000498056 PTPRMP28827 1452 aa20.05■□□□□ 0.8
CPNE1-227ENST00000498056 SYNMO15061 1565 aa20.04■□□□□ 0.8
CPNE1-227ENST00000498056 SPATA31D1Q6ZQQ2 1576 aa20.04■□□□□ 0.8
CPNE1-227ENST00000498056 ARHGAP31Q2M1Z3 1444 aa20.04■□□□□ 0.8
CPNE1-227ENST00000498056 ERVK-7P63135 1459 aa20.04■□□□□ 0.8
CPNE1-227ENST00000498056 DHX57Q6P158 1386 aaKnown RBP20.03■□□□□ 0.8
CPNE1-227ENST00000498056 TRPM2O94759 1503 aa20.02■□□□□ 0.8
CPNE1-227ENST00000498056 KIF1BO60333 1816 aa20.02■□□□□ 0.8
CPNE1-227ENST00000498056 PLPPR3Q6T4P5 718 aa20.02■□□□□ 0.8
CPNE1-227ENST00000498056 MPHOSPH9Q99550 1183 aa20.02■□□□□ 0.8
CPNE1-227ENST00000498056 MYO5BQ9ULV0 1848 aa20.02■□□□□ 0.79
CPNE1-227ENST00000498056 CLTCL1P53675 1640 aa20.02■□□□□ 0.79
CPNE1-227ENST00000498056 ZMYM3Q14202 1370 aa20.01■□□□□ 0.79
CPNE1-227ENST00000498056 PKD2Q13563 968 aa20■□□□□ 0.79
CPNE1-227ENST00000498056 PIK3C2BO00750 1634 aa20■□□□□ 0.79
CPNE1-227ENST00000498056 UGGT1Q9NYU2 1555 aa20■□□□□ 0.79
CPNE1-227ENST00000498056 ZNF142P52746 1687 aaPredicted RBP19.98■□□□□ 0.79
CPNE1-227ENST00000498056 FOXD1Q16676 465 aa19.97■□□□□ 0.79
CPNE1-227ENST00000498056 KDM4FA0A1W2PPD8 638 aa19.96■□□□□ 0.79
CPNE1-227ENST00000498056 CEBPAP49715 358 aaPredicted RBP19.95■□□□□ 0.78
CPNE1-227ENST00000498056 NOS1P29475 1434 aa19.94■□□□□ 0.78
CPNE1-227ENST00000498056 SETD1BQ9UPS6 1966 aaKnown RBP19.94■□□□□ 0.78
CPNE1-227ENST00000498056 TNRQ92752 1358 aa19.93■□□□□ 0.78
CPNE1-227ENST00000498056 UBR1Q8IWV7 1749 aa19.92■□□□□ 0.78
CPNE1-227ENST00000498056 PTPRTO14522 1441 aa19.92■□□□□ 0.78
CPNE1-227ENST00000498056 CEP170BQ9Y4F5 1589 aaPredicted RBP19.91■□□□□ 0.78
CPNE1-227ENST00000498056 FBXO31Q5XUX0 539 aaPredicted RBP19.91■□□□□ 0.78
CPNE1-227ENST00000498056 ADGRB3O60242 1522 aa19.91■□□□□ 0.78
CPNE1-227ENST00000498056 KDM5AP29375 1690 aaKnown RBP19.91■□□□□ 0.78
CPNE1-227ENST00000498056 CCDC144AA2RUR9 1427 aa19.9■□□□□ 0.78
CPNE1-227ENST00000498056 PLA2R1Q13018 1463 aa19.9■□□□□ 0.78
CPNE1-227ENST00000498056 NLRP1Q9C000 1473 aa19.87■□□□□ 0.77
CPNE1-227ENST00000498056 ANKRD30BQ9BXX2 1392 aa19.87■□□□□ 0.77
CPNE1-227ENST00000498056 CCER1Q8TC90 406 aaPredicted RBP19.87■□□□□ 0.77
CPNE1-227ENST00000498056 TMEM131LA2VDJ0 1609 aa19.87■□□□□ 0.77
CPNE1-227ENST00000498056 IFT172Q9UG01 1749 aa19.85■□□□□ 0.77
CPNE1-227ENST00000498056 UHRF1BP1Q6BDS2 1440 aa19.84■□□□□ 0.77
CPNE1-227ENST00000498056 PPLO60437 1756 aa19.83■□□□□ 0.76
CPNE1-227ENST00000498056 POLR1AO95602 1720 aaPredicted RBP19.82■□□□□ 0.76
CPNE1-227ENST00000498056 A2ML1A8K2U0 1454 aa19.82■□□□□ 0.76
CPNE1-227ENST00000498056 NEURL4Q96JN8 1562 aa19.79■□□□□ 0.76
CPNE1-227ENST00000498056 CHGAP10645 457 aaKnown RBP19.76■□□□□ 0.75
CPNE1-227ENST00000498056 SLC52A1Q9NWF4 448 aa19.76■□□□□ 0.75
CPNE1-227ENST00000498056 LMTK3Q96Q04 1460 aa19.75■□□□□ 0.75
CPNE1-227ENST00000498056 STAG3Q9UJ98 1225 aa19.75■□□□□ 0.75
CPNE1-227ENST00000498056 CLSPNQ9HAW4 1339 aa19.75■□□□□ 0.75
CPNE1-227ENST00000498056 IDI1Q13907 227 aa19.74■□□□□ 0.75
CPNE1-227ENST00000498056 NEXMIFQ5QGS0 1516 aa19.74■□□□□ 0.75
CPNE1-227ENST00000498056 SIN3AQ96ST3 1273 aa19.73■□□□□ 0.75
CPNE1-227ENST00000498056 SPATA31E1Q6ZUB1 1445 aa19.73■□□□□ 0.75
CPNE1-227ENST00000498056 NEUROD1Q13562 356 aa19.72■□□□□ 0.75
CPNE1-227ENST00000498056 IQGAP1P46940 1657 aa19.69■□□□□ 0.74
CPNE1-227ENST00000498056 SLIT1O75093 1534 aa19.69■□□□□ 0.74
CPNE1-227ENST00000498056 TONSLQ96HA7 1378 aa19.69■□□□□ 0.74
CPNE1-227ENST00000498056 ZNF326Q5BKZ1 582 aaKnown RBP19.68■□□□□ 0.74
CPNE1-227ENST00000498056 ARHGAP23Q9P227 1491 aa19.67■□□□□ 0.74
CPNE1-227ENST00000498056 RIMS2Q9UQ26 1411 aa19.66■□□□□ 0.74
CPNE1-227ENST00000498056 RGL3Q3MIN7 710 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms