RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 FER1L4A9Z1Z3 1794 aa14.99□□□□□ -0.01
HDAC3-214ENST00000495485 SETD1BQ9UPS6 1966 aaKnown RBP14.99□□□□□ -0.01
HDAC3-214ENST00000495485 SIGLEC1Q9BZZ2 1709 aa14.97□□□□□ -0.01
HDAC3-214ENST00000495485 RNF17Q9BXT8 1623 aaKnown RBP14.97□□□□□ -0.01
HDAC3-214ENST00000495485 MROH2AA6NES4 1674 aa14.97□□□□□ -0.01
HDAC3-214ENST00000495485 GCC2Q8IWJ2 1684 aa14.97□□□□□ -0.01
HDAC3-214ENST00000495485 ESF1Q9H501 851 aaKnown RBP14.96□□□□□ -0.01
HDAC3-214ENST00000495485 KDM4FA0A1W2PPD8 638 aa14.95□□□□□ -0.02
HDAC3-214ENST00000495485 MADDQ8WXG6 1647 aa14.95□□□□□ -0.02
HDAC3-214ENST00000495485 ZC3H13Q5T200 1668 aaKnown RBP14.94□□□□□ -0.02
HDAC3-214ENST00000495485 NAIPQ13075 1403 aa14.93□□□□□ -0.02
HDAC3-214ENST00000495485 PTPRKQ15262 1439 aa14.92□□□□□ -0.02
HDAC3-214ENST00000495485 ANKRD50Q9ULJ7 1429 aa14.92□□□□□ -0.02
HDAC3-214ENST00000495485 DEPDC5O75140 1603 aa14.92□□□□□ -0.02
HDAC3-214ENST00000495485 KIF3BO15066 747 aa14.92□□□□□ -0.02
HDAC3-214ENST00000495485 CHIC2Q9UKJ5 165 aa14.92□□□□□ -0.02
HDAC3-214ENST00000495485 KDM5DQ9BY66 1539 aa14.92□□□□□ -0.02
HDAC3-214ENST00000495485 RIMS1Q86UR5 1692 aaKnown RBP14.91□□□□□ -0.02
HDAC3-214ENST00000495485 RRP7BPQ9NSQ0 103 aa14.91□□□□□ -0.02
HDAC3-214ENST00000495485 TIMELESSQ9UNS1 1208 aa14.91□□□□□ -0.02
HDAC3-214ENST00000495485 PTPRMP28827 1452 aa14.9□□□□□ -0.02
HDAC3-214ENST00000495485 KANK1Q14678 1352 aa14.9□□□□□ -0.02
HDAC3-214ENST00000495485 PRDM15P57071 1507 aaPredicted RBP14.9□□□□□ -0.02
HDAC3-214ENST00000495485 MLECQ14165 292 aa14.88□□□□□ -0.03
HDAC3-214ENST00000495485 GGT6Q6P531 493 aa14.88□□□□□ -0.03
HDAC3-214ENST00000495485 AEBP2Q6ZN18 517 aaPredicted RBP14.88□□□□□ -0.03
HDAC3-214ENST00000495485 CLTCQ00610 1675 aaKnown RBP14.86□□□□□ -0.03
HDAC3-214ENST00000495485 WASHC2CQ9Y4E1 1318 aa14.86□□□□□ -0.03
HDAC3-214ENST00000495485 NPATQ14207 1427 aa14.85□□□□□ -0.03
HDAC3-214ENST00000495485 TRIM52Q96A61 297 aa14.85□□□□□ -0.03
HDAC3-214ENST00000495485 LMTK2Q8IWU2 1503 aa14.85□□□□□ -0.03
HDAC3-214ENST00000495485 UNC13BO14795 1591 aa14.85□□□□□ -0.03
HDAC3-214ENST00000495485 MROH1Q8NDA8 1641 aa14.84□□□□□ -0.03
HDAC3-214ENST00000495485 C3P01024 1663 aa14.84□□□□□ -0.03
HDAC3-214ENST00000495485 VWDEQ8N2E2 1590 aa14.84□□□□□ -0.03
HDAC3-214ENST00000495485 ARHGAP31Q2M1Z3 1444 aa14.83□□□□□ -0.03
HDAC3-214ENST00000495485 ABCC3O15438 1527 aa14.83□□□□□ -0.04
HDAC3-214ENST00000495485 ZMYM3Q14202 1370 aa14.83□□□□□ -0.04
HDAC3-214ENST00000495485 PZPP20742 1482 aa14.82□□□□□ -0.04
HDAC3-214ENST00000495485 RPRD2Q5VT52 1461 aaKnown RBP14.8□□□□□ -0.04
HDAC3-214ENST00000495485 CAMSAP1Q5T5Y3 1602 aa14.8□□□□□ -0.04
HDAC3-214ENST00000495485 IQGAP3Q86VI3 1631 aa14.8□□□□□ -0.04
HDAC3-214ENST00000495485 TET3O43151 1660 aa14.79□□□□□ -0.04
HDAC3-214ENST00000495485 CEP152O94986 1710 aa14.79□□□□□ -0.04
HDAC3-214ENST00000495485 PREX1Q8TCU6 1659 aa14.79□□□□□ -0.04
HDAC3-214ENST00000495485 ZNF316A6NFI3 1004 aaPredicted RBP14.76□□□□□ -0.05
HDAC3-214ENST00000495485 EFCAB6Q5THR3 1501 aa14.76□□□□□ -0.05
HDAC3-214ENST00000495485 MPHOSPH9Q99550 1183 aa14.75□□□□□ -0.05
HDAC3-214ENST00000495485 UHRF1BP1Q6BDS2 1440 aa14.75□□□□□ -0.05
HDAC3-214ENST00000495485 NUP155O75694 1391 aa14.74□□□□□ -0.05
HDAC3-214ENST00000495485 SPATA31D1Q6ZQQ2 1576 aa14.74□□□□□ -0.05
HDAC3-214ENST00000495485 NEUROD1Q13562 356 aa14.74□□□□□ -0.05
HDAC3-214ENST00000495485 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.74□□□□□ -0.054e-9■■□□□ 11.7
HDAC3-214ENST00000495485 NLRP1Q9C000 1473 aa14.74□□□□□ -0.05
HDAC3-214ENST00000495485 CFAP65Q6ZU64 1925 aaKnown RBP14.74□□□□□ -0.05
HDAC3-214ENST00000495485 TONSLQ96HA7 1378 aa14.73□□□□□ -0.05
HDAC3-214ENST00000495485 ZNF142P52746 1687 aaPredicted RBP14.72□□□□□ -0.05
HDAC3-214ENST00000495485 SLC4A1APQ9BWU0 796 aaKnown RBP14.72□□□□□ -0.05
HDAC3-214ENST00000495485 ERVK-7P63135 1459 aa14.71□□□□□ -0.05
HDAC3-214ENST00000495485 TNRQ92752 1358 aa14.71□□□□□ -0.06
HDAC3-214ENST00000495485 KDM5AP29375 1690 aaKnown RBP14.71□□□□□ -0.06
HDAC3-214ENST00000495485 CEBPAP49715 358 aaPredicted RBP14.7□□□□□ -0.06
HDAC3-214ENST00000495485 MYO3AQ8NEV4 1616 aa14.69□□□□□ -0.06
HDAC3-214ENST00000495485 NOS1P29475 1434 aa14.68□□□□□ -0.06
HDAC3-214ENST00000495485 SIN3AQ96ST3 1273 aa14.68□□□□□ -0.06
HDAC3-214ENST00000495485 SLC52A1Q9NWF4 448 aa14.68□□□□□ -0.06
HDAC3-214ENST00000495485 A2ML1A8K2U0 1454 aa14.68□□□□□ -0.06
HDAC3-214ENST00000495485 LMTK3Q96Q04 1460 aa14.68□□□□□ -0.06
HDAC3-214ENST00000495485 E9PCH4 1651 aa14.68□□□□□ -0.06
HDAC3-214ENST00000495485 CEP170BQ9Y4F5 1589 aaPredicted RBP14.67□□□□□ -0.06
HDAC3-214ENST00000495485 PLA2R1Q13018 1463 aa14.64□□□□□ -0.07
HDAC3-214ENST00000495485 SPHKAPQ2M3C7 1700 aa14.64□□□□□ -0.07
HDAC3-214ENST00000495485 PPP1R15AO75807 674 aaPredicted RBP14.64□□□□□ -0.07
HDAC3-214ENST00000495485 FBXO31Q5XUX0 539 aaPredicted RBP14.63□□□□□ -0.07
HDAC3-214ENST00000495485 THEMISQ8N1K5 641 aaPredicted RBP14.63□□□□□ -0.07
HDAC3-214ENST00000495485 PTPRTO14522 1441 aa14.63□□□□□ -0.07
HDAC3-214ENST00000495485 PLPPR3Q6T4P5 718 aa14.62□□□□□ -0.07
HDAC3-214ENST00000495485 UGGT1Q9NYU2 1555 aa14.62□□□□□ -0.07
HDAC3-214ENST00000495485 PIK3C2BO00750 1634 aa14.62□□□□□ -0.07
HDAC3-214ENST00000495485 ANKRD30BQ9BXX2 1392 aa14.61□□□□□ -0.07
HDAC3-214ENST00000495485 DIEXFQ68CQ4 756 aaKnown RBP14.61□□□□□ -0.07
HDAC3-214ENST00000495485 SYNMO15061 1565 aa14.6□□□□□ -0.07
HDAC3-214ENST00000495485 PKD2Q13563 968 aa14.6□□□□□ -0.07
HDAC3-214ENST00000495485 DMRT2Q9Y5R5 561 aa14.6□□□□□ -0.07
HDAC3-214ENST00000495485 TRPM2O94759 1503 aa14.6□□□□□ -0.07
HDAC3-214ENST00000495485 UBR1Q8IWV7 1749 aa14.59□□□□□ -0.07
HDAC3-214ENST00000495485 KIF1BO60333 1816 aa14.57□□□□□ -0.08
HDAC3-214ENST00000495485 HDGFP51858 240 aaKnown RBP14.57□□□□□ -0.08
HDAC3-214ENST00000495485 ADGRB3O60242 1522 aa14.56□□□□□ -0.08
HDAC3-214ENST00000495485 STAG3Q9UJ98 1225 aa14.56□□□□□ -0.08
HDAC3-214ENST00000495485 SLIT1O75093 1534 aa14.56□□□□□ -0.08
HDAC3-214ENST00000495485 POLR1AO95602 1720 aaPredicted RBP14.55□□□□□ -0.08
HDAC3-214ENST00000495485 IDI1Q13907 227 aa14.55□□□□□ -0.08
HDAC3-214ENST00000495485 NEURL4Q96JN8 1562 aa14.55□□□□□ -0.08
HDAC3-214ENST00000495485 ARHGAP23Q9P227 1491 aa14.53□□□□□ -0.08
HDAC3-214ENST00000495485 FOXD1Q16676 465 aa14.53□□□□□ -0.08
HDAC3-214ENST00000495485 ANKLE2Q86XL3 938 aa14.53□□□□□ -0.08
HDAC3-214ENST00000495485 STRCQ7RTU9 1775 aa14.52□□□□□ -0.08
HDAC3-214ENST00000495485 TMEM131LA2VDJ0 1609 aa14.52□□□□□ -0.08
HDAC3-214ENST00000495485 EID1Q9Y6B2 187 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms