RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 HAP1P54257 671 aaPredicted RBP11.75□□□□□ -0.53
PRPF40A-210ENST00000489741 E2F4Q16254 413 aa11.75□□□□□ -0.53
PRPF40A-210ENST00000489741 TOPBP1Q92547 1522 aa11.75□□□□□ -0.53
PRPF40A-210ENST00000489741 ZNF608Q9ULD9 1512 aaPredicted RBP11.75□□□□□ -0.53
PRPF40A-210ENST00000489741 DPYSL4O14531 572 aa11.73□□□□□ -0.53
PRPF40A-210ENST00000489741 ZNF687Q8N1G0 1237 aa11.73□□□□□ -0.53
PRPF40A-210ENST00000489741 ABCC8Q09428 1581 aa11.72□□□□□ -0.53
PRPF40A-210ENST00000489741 PPP4R3BQ5MIZ7 849 aa11.7□□□□□ -0.54
PRPF40A-210ENST00000489741 PLSCR2Q9NRY7 297 aa11.7□□□□□ -0.54
PRPF40A-210ENST00000489741 ZNF454Q8N9F8 522 aa11.68□□□□□ -0.54
PRPF40A-210ENST00000489741 KRTAP3-3Q9BYR6 98 aa11.68□□□□□ -0.54
PRPF40A-210ENST00000489741 KRTAP3-2Q9BYR7 98 aa11.68□□□□□ -0.54
PRPF40A-210ENST00000489741 PRDM2Q13029 1718 aa11.68□□□□□ -0.54
PRPF40A-210ENST00000489741 ANO8Q9HCE9 1232 aaPredicted RBP11.67□□□□□ -0.54
PRPF40A-210ENST00000489741 DNMBPQ6XZF7 1577 aa11.67□□□□□ -0.54
PRPF40A-210ENST00000489741 AQRO60306 1485 aaKnown RBP eCLIP11.65□□□□□ -0.546e-17■■■■□ 23.7
PRPF40A-210ENST00000489741 PBX2P40425 430 aa11.65□□□□□ -0.54
PRPF40A-210ENST00000489741 JPH4Q96JJ6 628 aa11.64□□□□□ -0.55
PRPF40A-210ENST00000489741 FOSBP53539 338 aa11.63□□□□□ -0.55
PRPF40A-210ENST00000489741 POLA1P09884 1462 aaPredicted RBP11.63□□□□□ -0.55
PRPF40A-210ENST00000489741 TARBP1Q13395 1621 aaKnown RBP11.62□□□□□ -0.55
PRPF40A-210ENST00000489741 AXIN2Q9Y2T1 843 aa11.62□□□□□ -0.55
PRPF40A-210ENST00000489741 PDIA6Q15084 440 aa11.61□□□□□ -0.55
PRPF40A-210ENST00000489741 SPDYE16A6NNV3 312 aaPredicted RBP11.6□□□□□ -0.55
PRPF40A-210ENST00000489741 KCNH8Q96L42 1107 aa11.6□□□□□ -0.55
PRPF40A-210ENST00000489741 ARIH1Q9Y4X5 557 aaPredicted RBP11.6□□□□□ -0.55
PRPF40A-210ENST00000489741 ARHGEF11O15085 1522 aa11.6□□□□□ -0.55
PRPF40A-210ENST00000489741 SOGA1O94964 1423 aa11.6□□□□□ -0.55
PRPF40A-210ENST00000489741 EIF4G3O43432 1585 aaKnown RBP11.59□□□□□ -0.55
PRPF40A-210ENST00000489741 RAD54L2Q9Y4B4 1467 aa11.59□□□□□ -0.55
PRPF40A-210ENST00000489741 TDRD9Q8NDG6 1382 aaKnown RBP11.59□□□□□ -0.55
PRPF40A-210ENST00000489741 ARHGAP33O14559 1287 aa11.59□□□□□ -0.55
PRPF40A-210ENST00000489741 RIMBP3CA6NJZ7 1639 aa11.59□□□□□ -0.55
PRPF40A-210ENST00000489741 RIMBP3BA6NNM3 1639 aa11.59□□□□□ -0.55
PRPF40A-210ENST00000489741 RIMBP3Q9UFD9 1639 aa11.59□□□□□ -0.55
PRPF40A-210ENST00000489741 LSM11P83369 360 aaKnown RBP eCLIP11.58□□□□□ -0.56
PRPF40A-210ENST00000489741 ANKRD13DQ6ZTN6 518 aa11.58□□□□□ -0.56
PRPF40A-210ENST00000489741 KCNV2Q8TDN2 545 aa11.58□□□□□ -0.56
PRPF40A-210ENST00000489741 ZDHHC16Q969W1 377 aa11.58□□□□□ -0.56
PRPF40A-210ENST00000489741 KCNK17Q96T54 332 aa11.58□□□□□ -0.56
PRPF40A-210ENST00000489741 CYB5RLQ6IPT4 315 aa11.57□□□□□ -0.56
PRPF40A-210ENST00000489741 POTEEQ6S8J3 1075 aa11.57□□□□□ -0.56
PRPF40A-210ENST00000489741 P3H3Q8IVL6 736 aa11.57□□□□□ -0.56
PRPF40A-210ENST00000489741 DDX12PQ92771 950 aa11.57□□□□□ -0.56
PRPF40A-210ENST00000489741 PCDHGA10Q9Y5H3 936 aa11.57□□□□□ -0.56
PRPF40A-210ENST00000489741 SPNS2Q8IVW8 549 aa11.56□□□□□ -0.56
PRPF40A-210ENST00000489741 BCL2L12Q9HB09 334 aa11.56□□□□□ -0.56
PRPF40A-210ENST00000489741 PHF14O94880 888 aa11.55□□□□□ -0.56
PRPF40A-210ENST00000489741 PSEN2P49810 448 aa11.55□□□□□ -0.56
PRPF40A-210ENST00000489741 TYW1BQ6NUM6 668 aa11.55□□□□□ -0.56
PRPF40A-210ENST00000489741 ARHGEF1Q92888 912 aaKnown RBP11.55□□□□□ -0.56
PRPF40A-210ENST00000489741 FBXW7Q969H0 707 aa11.54□□□□□ -0.56
PRPF40A-210ENST00000489741 ADAM33Q9BZ11 813 aa11.54□□□□□ -0.56
PRPF40A-210ENST00000489741 FGD5Q6ZNL6 1462 aa11.53□□□□□ -0.56
PRPF40A-210ENST00000489741 PTPREP23469 700 aa11.53□□□□□ -0.56
PRPF40A-210ENST00000489741 PTGER2P43116 358 aa11.53□□□□□ -0.56
PRPF40A-210ENST00000489741 CUX1P39880 1505 aa11.53□□□□□ -0.56
PRPF40A-210ENST00000489741 EPAS1Q99814 870 aa11.52□□□□□ -0.57
PRPF40A-210ENST00000489741 NBR1Q14596 966 aa11.51□□□□□ -0.57
PRPF40A-210ENST00000489741 DMRTA1Q5VZB9 504 aa11.51□□□□□ -0.57
PRPF40A-210ENST00000489741 KDM2AQ9Y2K7 1162 aa11.51□□□□□ -0.57
PRPF40A-210ENST00000489741 GRXCR2A6NFK2 248 aa11.5□□□□□ -0.57
PRPF40A-210ENST00000489741 VSIG10Q8N0Z9 540 aa11.5□□□□□ -0.57
PRPF40A-210ENST00000489741 ARAP1Q96P48 1450 aa11.5□□□□□ -0.57
PRPF40A-210ENST00000489741 CHMP7Q8WUX9 453 aaPredicted RBP11.49□□□□□ -0.57
PRPF40A-210ENST00000489741 RBM33Q96EV2 1170 aaKnown RBP11.49□□□□□ -0.57
PRPF40A-210ENST00000489741 SNAPC4Q5SXM2 1469 aa11.49□□□□□ -0.57
PRPF40A-210ENST00000489741 WDR97A6NE52 1622 aa11.49□□□□□ -0.57
PRPF40A-210ENST00000489741 GRIN2BQ13224 1484 aa11.48□□□□□ -0.57
PRPF40A-210ENST00000489741 MAGI1Q96QZ7 1491 aaPredicted RBP11.47□□□□□ -0.57
PRPF40A-210ENST00000489741 ADGRD1Q6QNK2 874 aa11.47□□□□□ -0.57
PRPF40A-210ENST00000489741 CHD1O14646 1710 aa11.46□□□□□ -0.57
PRPF40A-210ENST00000489741 SUPT5HO00267 1087 aaKnown RBP11.46□□□□□ -0.57
PRPF40A-210ENST00000489741 MMRN1Q13201 1228 aa11.46□□□□□ -0.57
PRPF40A-210ENST00000489741 MAP3K7O43318 606 aa11.45□□□□□ -0.58
PRPF40A-210ENST00000489741 CLASP1Q7Z460 1538 aa11.45□□□□□ -0.58
PRPF40A-210ENST00000489741 TK2O00142 265 aa11.44□□□□□ -0.58
PRPF40A-210ENST00000489741 ABCA10Q8WWZ4 1543 aa11.44□□□□□ -0.58
PRPF40A-210ENST00000489741 SYNJ2O15056 1496 aa11.44□□□□□ -0.58
PRPF40A-210ENST00000489741 GAPVD1Q14C86 1478 aa11.44□□□□□ -0.58
PRPF40A-210ENST00000489741 PPP1R3GB7ZBB8 358 aa11.43□□□□□ -0.58
PRPF40A-210ENST00000489741 EN1Q05925 392 aaPredicted RBP11.43□□□□□ -0.58
PRPF40A-210ENST00000489741 C6orf132Q5T0Z8 1188 aa11.42□□□□□ -0.58
PRPF40A-210ENST00000489741 MYT1LQ9UL68 1186 aa11.42□□□□□ -0.58
PRPF40A-210ENST00000489741 VPS9D1Q9Y2B5 631 aa11.41□□□□□ -0.58
PRPF40A-210ENST00000489741 COL9A1P20849 921 aa11.4□□□□□ -0.58
PRPF40A-210ENST00000489741 STAC3Q96MF2 364 aa11.4□□□□□ -0.58
PRPF40A-210ENST00000489741 ZBED2Q9BTP6 218 aa11.4□□□□□ -0.58
PRPF40A-210ENST00000489741 SYNJ1O43426 1573 aa11.39□□□□□ -0.59
PRPF40A-210ENST00000489741 MLLT3P42568 568 aaPredicted RBP11.39□□□□□ -0.59
PRPF40A-210ENST00000489741 TSR1Q2NL82 804 aaKnown RBP11.39□□□□□ -0.59
PRPF40A-210ENST00000489741 SLC4A5Q9BY07 1137 aa11.39□□□□□ -0.59
PRPF40A-210ENST00000489741 WRNQ14191 1432 aaPredicted RBP eCLIP11.38□□□□□ -0.59
PRPF40A-210ENST00000489741 OSBPP22059 807 aa11.38□□□□□ -0.59
PRPF40A-210ENST00000489741 RNF166Q96A37 237 aaPredicted RBP11.38□□□□□ -0.59
PRPF40A-210ENST00000489741 SEMA3EO15041 775 aa11.37□□□□□ -0.59
PRPF40A-210ENST00000489741 PRIM1P49642 420 aaKnown RBP11.37□□□□□ -0.59
PRPF40A-210ENST00000489741 ABCA5Q8WWZ7 1642 aa11.35□□□□□ -0.59
PRPF40A-210ENST00000489741 HRO43593 1189 aa11.35□□□□□ -0.59
PRPF40A-210ENST00000489741 PROX2Q3B8N5 592 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms