RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 MROH2AA6NES4 1674 aa23.92■■□□□ 1.42
HMGA1-206ENST00000478214 HSPA2P54652 639 aa23.92■■□□□ 1.42
HMGA1-206ENST00000478214 WASHC2CQ9Y4E1 1318 aa23.91■■□□□ 1.42
HMGA1-206ENST00000478214 PTPRKQ15262 1439 aa23.91■■□□□ 1.42
HMGA1-206ENST00000478214 ADGRL2O95490 1459 aa23.89■■□□□ 1.42
HMGA1-206ENST00000478214 ERBINQ96RT1 1412 aa23.89■■□□□ 1.41
HMGA1-206ENST00000478214 KDM5DQ9BY66 1539 aa23.89■■□□□ 1.41
HMGA1-206ENST00000478214 RNF17Q9BXT8 1623 aaKnown RBP23.88■■□□□ 1.41
HMGA1-206ENST00000478214 EIF2AK4Q9P2K8 1649 aaKnown RBP23.88■■□□□ 1.41
HMGA1-206ENST00000478214 NPATQ14207 1427 aa23.87■■□□□ 1.41
HMGA1-206ENST00000478214 UHRF1BP1Q6BDS2 1440 aa23.87■■□□□ 1.41
HMGA1-206ENST00000478214 PREX1Q8TCU6 1659 aa23.86■■□□□ 1.41
HMGA1-206ENST00000478214 FAM135AQ9P2D6 1515 aa23.86■■□□□ 1.41
HMGA1-206ENST00000478214 ITGAEP38570 1179 aa23.86■■□□□ 1.41
HMGA1-206ENST00000478214 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.86■■□□□ 1.419e-21■□□□□ 10.3
HMGA1-206ENST00000478214 SETD1BQ9UPS6 1966 aaKnown RBP23.85■■□□□ 1.41
HMGA1-206ENST00000478214 MROH1Q8NDA8 1641 aa23.84■■□□□ 1.41
HMGA1-206ENST00000478214 RRBP1Q9P2E9 1410 aaKnown RBP23.83■■□□□ 1.4
HMGA1-206ENST00000478214 FBXO31Q5XUX0 539 aaPredicted RBP23.82■■□□□ 1.4
HMGA1-206ENST00000478214 ABCC3O15438 1527 aa23.82■■□□□ 1.4
HMGA1-206ENST00000478214 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.81■■□□□ 1.42e-6■■□□□ 14.5
HMGA1-206ENST00000478214 PZPP20742 1482 aa23.8■■□□□ 1.4
HMGA1-206ENST00000478214 ANKRD50Q9ULJ7 1429 aa23.78■■□□□ 1.4
HMGA1-206ENST00000478214 ROCK1Q13464 1354 aa23.78■■□□□ 1.4
HMGA1-206ENST00000478214 PRDM15P57071 1507 aaPredicted RBP23.77■■□□□ 1.4
HMGA1-206ENST00000478214 TNRQ92752 1358 aa23.75■■□□□ 1.39
HMGA1-206ENST00000478214 ZC3H13Q5T200 1668 aaKnown RBP23.74■■□□□ 1.39
HMGA1-206ENST00000478214 KANK1Q14678 1352 aa23.74■■□□□ 1.39
HMGA1-206ENST00000478214 DEPDC5O75140 1603 aa23.73■■□□□ 1.39
HMGA1-206ENST00000478214 CEP152O94986 1710 aa23.72■■□□□ 1.39
HMGA1-206ENST00000478214 MYO3AQ8NEV4 1616 aa23.7■■□□□ 1.39
HMGA1-206ENST00000478214 CAMSAP1Q5T5Y3 1602 aa23.69■■□□□ 1.38
HMGA1-206ENST00000478214 VWDEQ8N2E2 1590 aa23.68■■□□□ 1.38
HMGA1-206ENST00000478214 CEP170BQ9Y4F5 1589 aaPredicted RBP23.68■■□□□ 1.38
HMGA1-206ENST00000478214 ERVK-7P63135 1459 aa23.67■■□□□ 1.38
HMGA1-206ENST00000478214 ARHGAP31Q2M1Z3 1444 aa23.67■■□□□ 1.38
HMGA1-206ENST00000478214 A2ML1A8K2U0 1454 aa23.66■■□□□ 1.38
HMGA1-206ENST00000478214 LMTK2Q8IWU2 1503 aa23.65■■□□□ 1.38
HMGA1-206ENST00000478214 SPATA31D1Q6ZQQ2 1576 aa23.65■■□□□ 1.38
HMGA1-206ENST00000478214 ZNF142P52746 1687 aaPredicted RBP23.64■■□□□ 1.38
HMGA1-206ENST00000478214 STRCQ7RTU9 1775 aa23.62■■□□□ 1.37
HMGA1-206ENST00000478214 NLRP1Q9C000 1473 aa23.62■■□□□ 1.37
HMGA1-206ENST00000478214 DMRT2Q9Y5R5 561 aa23.59■■□□□ 1.37
HMGA1-206ENST00000478214 UNC13BO14795 1591 aa23.59■■□□□ 1.37
HMGA1-206ENST00000478214 NCKAP5LQ9HCH0 1330 aa23.59■■□□□ 1.37
HMGA1-206ENST00000478214 EFCAB6Q5THR3 1501 aa23.58■■□□□ 1.36
HMGA1-206ENST00000478214 NAIPQ13075 1403 aa23.58■■□□□ 1.36
HMGA1-206ENST00000478214 CFAP65Q6ZU64 1925 aaKnown RBP23.57■■□□□ 1.36
HMGA1-206ENST00000478214 PLA2R1Q13018 1463 aa23.57■■□□□ 1.36
HMGA1-206ENST00000478214 NUP155O75694 1391 aa23.56■■□□□ 1.36
HMGA1-206ENST00000478214 UGGT1Q9NYU2 1555 aa23.54■■□□□ 1.36
HMGA1-206ENST00000478214 PTPRTO14522 1441 aa23.54■■□□□ 1.36
HMGA1-206ENST00000478214 THEMISQ8N1K5 641 aaPredicted RBP23.54■■□□□ 1.36
HMGA1-206ENST00000478214 PKD2Q13563 968 aa23.53■■□□□ 1.36
HMGA1-206ENST00000478214 HFM1A2PYH4 1435 aa23.52■■□□□ 1.36
HMGA1-206ENST00000478214 NOS1P29475 1434 aa23.51■■□□□ 1.35
HMGA1-206ENST00000478214 TET3O43151 1660 aa23.51■■□□□ 1.35
HMGA1-206ENST00000478214 RPRD2Q5VT52 1461 aaKnown RBP23.49■■□□□ 1.35
HMGA1-206ENST00000478214 IQGAP3Q86VI3 1631 aa23.49■■□□□ 1.35
HMGA1-206ENST00000478214 IDI1Q13907 227 aa23.48■■□□□ 1.35
HMGA1-206ENST00000478214 SYNMO15061 1565 aa23.48■■□□□ 1.35
HMGA1-206ENST00000478214 GCC2Q8IWJ2 1684 aa23.48■■□□□ 1.35
HMGA1-206ENST00000478214 ANKLE2Q86XL3 938 aa23.47■■□□□ 1.35
HMGA1-206ENST00000478214 SLC52A1Q9NWF4 448 aa23.44■■□□□ 1.34
HMGA1-206ENST00000478214 STAG3Q9UJ98 1225 aa23.43■■□□□ 1.34
HMGA1-206ENST00000478214 UBR1Q8IWV7 1749 aa23.42■■□□□ 1.34
HMGA1-206ENST00000478214 E9PCH4 1651 aa23.42■■□□□ 1.34
HMGA1-206ENST00000478214 PIK3C2BO00750 1634 aa23.42■■□□□ 1.34
HMGA1-206ENST00000478214 NEURL4Q96JN8 1562 aa23.41■■□□□ 1.34
HMGA1-206ENST00000478214 TRIM52Q96A61 297 aa23.41■■□□□ 1.34
HMGA1-206ENST00000478214 ARHGAP23Q9P227 1491 aa23.37■■□□□ 1.33
HMGA1-206ENST00000478214 POLR1AO95602 1720 aaPredicted RBP23.37■■□□□ 1.33
HMGA1-206ENST00000478214 LTKP29376 864 aa23.37■■□□□ 1.33
HMGA1-206ENST00000478214 CERKQ8TCT0 537 aa23.37■■□□□ 1.33
HMGA1-206ENST00000478214 NPHP4O75161 1426 aaPredicted RBP23.36■■□□□ 1.33
HMGA1-206ENST00000478214 TXNDC2Q86VQ3 553 aa23.36■■□□□ 1.33
HMGA1-206ENST00000478214 SLIT1O75093 1534 aa23.36■■□□□ 1.33
HMGA1-206ENST00000478214 TMEM2Q9UHN6 1383 aa23.36■■□□□ 1.33
HMGA1-206ENST00000478214 MED14O60244 1454 aa23.36■■□□□ 1.33
HMGA1-206ENST00000478214 ZNF335Q9H4Z2 1342 aaPredicted RBP23.35■■□□□ 1.33
HMGA1-206ENST00000478214 ADGRB3O60242 1522 aa23.34■■□□□ 1.33
HMGA1-206ENST00000478214 SCAF11Q99590 1463 aaKnown RBP23.34■■□□□ 1.33
HMGA1-206ENST00000478214 ILDR1Q86SU0 546 aaPredicted RBP23.33■■□□□ 1.33
HMGA1-206ENST00000478214 EID1Q9Y6B2 187 aa23.33■■□□□ 1.33
HMGA1-206ENST00000478214 SLC4A1APQ9BWU0 796 aaKnown RBP23.32■■□□□ 1.32
HMGA1-206ENST00000478214 LTBP4Q8N2S1 1624 aa23.32■■□□□ 1.32
HMGA1-206ENST00000478214 KDM5AP29375 1690 aaKnown RBP23.32■■□□□ 1.32
HMGA1-206ENST00000478214 CHGAP10645 457 aaKnown RBP23.31■■□□□ 1.32
HMGA1-206ENST00000478214 SETD5Q9C0A6 1442 aa23.3■■□□□ 1.32
HMGA1-206ENST00000478214 FBXO41Q8TF61 875 aa23.27■■□□□ 1.32
HMGA1-206ENST00000478214 IQGAP1P46940 1657 aa23.27■■□□□ 1.32
HMGA1-206ENST00000478214 TMEM131LA2VDJ0 1609 aa23.26■■□□□ 1.31
HMGA1-206ENST00000478214 SPHKAPQ2M3C7 1700 aa23.25■■□□□ 1.31
HMGA1-206ENST00000478214 RIMS2Q9UQ26 1411 aa23.24■■□□□ 1.31
HMGA1-206ENST00000478214 FOXD1Q16676 465 aa23.23■■□□□ 1.31
HMGA1-206ENST00000478214 RAB3GAP2Q9H2M9 1393 aa23.23■■□□□ 1.31
HMGA1-206ENST00000478214 ZFYVE9O95405 1425 aa23.23■■□□□ 1.31
HMGA1-206ENST00000478214 MPHOSPH9Q99550 1183 aa23.22■■□□□ 1.31
HMGA1-206ENST00000478214 TRPM2O94759 1503 aa23.21■■□□□ 1.31
HMGA1-206ENST00000478214 MYO5BQ9ULV0 1848 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms