RNA–Protein interactions for RNA: ENST00000475339.1

ATG9A-220, Transcript of autophagy related 9A, humanhuman

TSL 2

Gene ATG9A, Length 812 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG9A-220ENST00000475339 LRRC7Q96NW7 1537 aa23.23■■□□□ 1.31
ATG9A-220ENST00000475339 THEMISQ8N1K5 641 aaPredicted RBP23.22■■□□□ 1.31
ATG9A-220ENST00000475339 INO80Q9ULG1 1556 aaPredicted RBP23.21■■□□□ 1.31
ATG9A-220ENST00000475339 MED14O60244 1454 aa23.2■■□□□ 1.3
ATG9A-220ENST00000475339 STRCP1A6NGW2 1772 aa23.18■■□□□ 1.3
ATG9A-220ENST00000475339 RNF17Q9BXT8 1623 aaKnown RBP23.18■■□□□ 1.3
ATG9A-220ENST00000475339 GPATCH8Q9UKJ3 1502 aaKnown RBP23.18■■□□□ 1.3
ATG9A-220ENST00000475339 KIAA1107Q9UPP5 1409 aa23.16■■□□□ 1.3
ATG9A-220ENST00000475339 DEPDC5O75140 1603 aa23.14■■□□□ 1.29
ATG9A-220ENST00000475339 PZPP20742 1482 aa23.13■■□□□ 1.29
ATG9A-220ENST00000475339 CCDC18Q5T9S5 1454 aa23.13■■□□□ 1.29
ATG9A-220ENST00000475339 CFDP1Q9UEE9 299 aaPredicted RBP23.13■■□□□ 1.29
ATG9A-220ENST00000475339 UGGT1Q9NYU2 1555 aa23.12■■□□□ 1.29
ATG9A-220ENST00000475339 IQGAP1P46940 1657 aa23.12■■□□□ 1.29
ATG9A-220ENST00000475339 FAM135AQ9P2D6 1515 aa23.12■■□□□ 1.29
ATG9A-220ENST00000475339 MIA2Q96PC5 1412 aa23.11■■□□□ 1.29
ATG9A-220ENST00000475339 PLEKHH2Q8IVE3 1493 aa23.11■■□□□ 1.29
ATG9A-220ENST00000475339 SETD1AO15047 1707 aaKnown RBP23.11■■□□□ 1.29
ATG9A-220ENST00000475339 SYNMO15061 1565 aa23.1■■□□□ 1.29
ATG9A-220ENST00000475339 ADGBQ8N7X0 1667 aa23.09■■□□□ 1.29
ATG9A-220ENST00000475339 CASKIN1Q8WXD9 1431 aa23.09■■□□□ 1.29
ATG9A-220ENST00000475339 NLRP1Q9C000 1473 aa23.09■■□□□ 1.29
ATG9A-220ENST00000475339 KIF3BO15066 747 aa23.08■■□□□ 1.29
ATG9A-220ENST00000475339 WASHC2CQ9Y4E1 1318 aa23.07■■□□□ 1.28
ATG9A-220ENST00000475339 DHX29Q7Z478 1369 aaKnown RBP23.06■■□□□ 1.28
ATG9A-220ENST00000475339 KDM5DQ9BY66 1539 aa23.03■■□□□ 1.28
ATG9A-220ENST00000475339 FAM135BQ49AJ0 1406 aa23.03■■□□□ 1.28
ATG9A-220ENST00000475339 ZNF644Q9H582 1327 aaPredicted RBP23.03■■□□□ 1.28
ATG9A-220ENST00000475339 UPF1Q92900 1129 aaKnown RBP eCLIP23.01■■□□□ 1.278e-9■■■■■ 36.1
ATG9A-220ENST00000475339 CCNB3Q8WWL7 1395 aa23.01■■□□□ 1.27
ATG9A-220ENST00000475339 RTEL1-TNFRSF6BF6WH68 1400 aa22.97■■□□□ 1.27
ATG9A-220ENST00000475339 MBD5Q9P267 1494 aa22.96■■□□□ 1.27
ATG9A-220ENST00000475339 ZC3H13Q5T200 1668 aaKnown RBP22.96■■□□□ 1.27
ATG9A-220ENST00000475339 CHIC1Q5VXU3 224 aa22.95■■□□□ 1.26
ATG9A-220ENST00000475339 XIRP1Q702N8 1843 aaKnown RBP22.95■■□□□ 1.26
ATG9A-220ENST00000475339 SRCAPQ6ZRS2 3230 aa22.92■■□□□ 1.26
ATG9A-220ENST00000475339 LTKP29376 864 aa22.91■■□□□ 1.26
ATG9A-220ENST00000475339 SCAF11Q99590 1463 aaKnown RBP22.91■■□□□ 1.26
ATG9A-220ENST00000475339 FYCO1Q9BQS8 1478 aa22.91■■□□□ 1.26
ATG9A-220ENST00000475339 TXNDC2Q86VQ3 553 aa22.89■■□□□ 1.25
ATG9A-220ENST00000475339 TRIM52Q96A61 297 aa22.89■■□□□ 1.25
ATG9A-220ENST00000475339 ROBO1Q9Y6N7 1651 aa22.88■■□□□ 1.25
ATG9A-220ENST00000475339 TMEM94Q12767 1356 aa22.88■■□□□ 1.25
ATG9A-220ENST00000475339 RBM33Q96EV2 1170 aaKnown RBP22.85■■□□□ 1.25
ATG9A-220ENST00000475339 JCADQ9P266 1359 aa22.83■■□□□ 1.25
ATG9A-220ENST00000475339 ERVK-7P63135 1459 aa22.83■■□□□ 1.25
ATG9A-220ENST00000475339 NCOA2Q15596 1464 aa22.82■■□□□ 1.24
ATG9A-220ENST00000475339 MTUS2Q5JR59 1369 aa22.82■■□□□ 1.24
ATG9A-220ENST00000475339 UBR1Q8IWV7 1749 aa22.81■■□□□ 1.24
ATG9A-220ENST00000475339 ARHGAP23Q9P227 1491 aa22.79■■□□□ 1.24
ATG9A-220ENST00000475339 ABCC3O15438 1527 aa22.79■■□□□ 1.24
ATG9A-220ENST00000475339 ZNF772Q68DY9 489 aaPredicted RBP22.79■■□□□ 1.24
ATG9A-220ENST00000475339 PROSER2Q86WR7 435 aaPredicted RBP22.79■■□□□ 1.24
ATG9A-220ENST00000475339 EID1Q9Y6B2 187 aa22.79■■□□□ 1.24
ATG9A-220ENST00000475339 TIAM1Q13009 1591 aa22.79■■□□□ 1.24
ATG9A-220ENST00000475339 CCDC141Q6ZP82 1450 aa22.78■■□□□ 1.24
ATG9A-220ENST00000475339 SLIT1O75093 1534 aa22.77■■□□□ 1.24
ATG9A-220ENST00000475339 MAP3K1Q13233 1512 aa22.77■■□□□ 1.24
ATG9A-220ENST00000475339 KCNA6P17658 529 aa22.76■■□□□ 1.23
ATG9A-220ENST00000475339 MEX3CQ5U5Q3 659 aaKnown RBP22.76■■□□□ 1.23
ATG9A-220ENST00000475339 LRRC9Q6ZRR7 1453 aa22.75■■□□□ 1.23
ATG9A-220ENST00000475339 LRP6O75581 1613 aa22.75■■□□□ 1.23
ATG9A-220ENST00000475339 PHLPP1O60346 1717 aa22.74■■□□□ 1.23
ATG9A-220ENST00000475339 SLAIN2Q9P270 581 aa22.74■■□□□ 1.23
ATG9A-220ENST00000475339 CFAP65Q6ZU64 1925 aaKnown RBP22.73■■□□□ 1.23
ATG9A-220ENST00000475339 RXRBP28702 533 aa22.73■■□□□ 1.23
ATG9A-220ENST00000475339 RSPH4AQ5TD94 716 aa22.72■■□□□ 1.23
ATG9A-220ENST00000475339 SLC26A8Q96RN1 970 aa22.7■■□□□ 1.22
ATG9A-220ENST00000475339 SPATA31A6Q5VVP1 1343 aa22.69■■□□□ 1.22
ATG9A-220ENST00000475339 MSH6P52701 1360 aa22.68■■□□□ 1.22
ATG9A-220ENST00000475339 TMEM2Q9UHN6 1383 aa22.68■■□□□ 1.22
ATG9A-220ENST00000475339 PRDM15P57071 1507 aaPredicted RBP22.67■■□□□ 1.22
ATG9A-220ENST00000475339 CAMSAP2Q08AD1 1489 aa22.67■■□□□ 1.22
ATG9A-220ENST00000475339 TSPY4P0CV99 314 aa22.67■■□□□ 1.22
ATG9A-220ENST00000475339 TSPY10P0CW01 314 aa22.67■■□□□ 1.22
ATG9A-220ENST00000475339 COL16A1Q07092 1604 aaPredicted RBP22.65■■□□□ 1.22
ATG9A-220ENST00000475339 CEP162Q5TB80 1403 aa22.64■■□□□ 1.21
ATG9A-220ENST00000475339 STAG3Q9UJ98 1225 aa22.63■■□□□ 1.21
ATG9A-220ENST00000475339 FGD6Q6ZV73 1430 aa22.63■■□□□ 1.21
ATG9A-220ENST00000475339 EHBP1L1Q8N3D4 1523 aa22.62■■□□□ 1.21
ATG9A-220ENST00000475339 CDK12Q9NYV4 1490 aaPredicted RBP22.61■■□□□ 1.21
ATG9A-220ENST00000475339 MROH1Q8NDA8 1641 aa22.61■■□□□ 1.21
ATG9A-220ENST00000475339 CEP152O94986 1710 aa22.61■■□□□ 1.21
ATG9A-220ENST00000475339 NKTRP30414 1462 aaKnown RBP22.6■■□□□ 1.21
ATG9A-220ENST00000475339 TET3O43151 1660 aa22.58■■□□□ 1.21
ATG9A-220ENST00000475339 PIK3C2BO00750 1634 aa22.58■■□□□ 1.21
ATG9A-220ENST00000475339 NUTM2BA6NNL0 878 aaPredicted RBP22.57■■□□□ 1.2
ATG9A-220ENST00000475339 NUTM2EB1AL46 878 aaPredicted RBP22.57■■□□□ 1.2
ATG9A-220ENST00000475339 NUTM2AQ8IVF1 878 aaPredicted RBP22.57■■□□□ 1.2
ATG9A-220ENST00000475339 ARHGEF5Q12774 1597 aa22.57■■□□□ 1.2
ATG9A-220ENST00000475339 NWD1Q149M9 1564 aa22.55■■□□□ 1.2
ATG9A-220ENST00000475339 ARHGAP31Q2M1Z3 1444 aa22.55■■□□□ 1.2
ATG9A-220ENST00000475339 EIF2AK4Q9P2K8 1649 aaKnown RBP22.54■■□□□ 1.2
ATG9A-220ENST00000475339 BCANQ96GW7 911 aa22.54■■□□□ 1.2
ATG9A-220ENST00000475339 AFF2P51816 1311 aa22.54■■□□□ 1.2
ATG9A-220ENST00000475339 EFCAB6Q5THR3 1501 aa22.53■■□□□ 1.2
ATG9A-220ENST00000475339 IDI1Q13907 227 aa22.53■■□□□ 1.2
ATG9A-220ENST00000475339 RGS12O14924 1447 aa22.52■■□□□ 1.2
ATG9A-220ENST00000475339 NUTM2DQ5VT03 806 aaPredicted RBP22.51■■□□□ 1.19
ATG9A-220ENST00000475339 SHPRHQ149N8 1683 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms